A B C D E F G H I J K L M N O P R S T U V W X Z

A

a0 - Variable in class org.hkijena.jipipe.ui.grapheditor.connections.RectangularLine

a1 - Variable in class org.hkijena.jipipe.ui.grapheditor.connections.RectangularLine

AbsoluteColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting

Applies a abs(x) function

AbsoluteColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.AbsoluteColumnOperation

accept(Object) - Method in class org.hkijena.jipipe.api.parameters.JIPipeDummyParameterCollection

accept(JIPipeWorkbench) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.ContextAction

accept(JIPipeGraphCanvasUI) - Method in class org.hkijena.jipipe.ui.grapheditor.layout.MSTGraphAutoLayoutMethod

accept(JIPipeGraphCanvasUI) - Method in class org.hkijena.jipipe.ui.grapheditor.layout.SugiyamaGraphAutoLayoutMethod

accepts(JIPipeData) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

Returns true if the slot can carry the provided data.

actionPerformed(ActionEvent) - Method in class org.hkijena.jipipe.extensions.parameters.ParameterTesterMenuExtension

actionPerformed(ActionEvent) - Method in class org.hkijena.jipipe.extensions.plots.NewPlotMenuExtension

actionPerformed(ActionEvent) - Method in class org.hkijena.jipipe.extensions.tables.NewTableMenuExtension

actionPerformed(ActionEvent) - Method in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog

ActivateUpdateSiteRun - Class in org.hkijena.jipipe.ui.ijupdater

ActivateUpdateSiteRun(FilesCollection, List<UpdateSite>) - Constructor for class org.hkijena.jipipe.ui.ijupdater.ActivateUpdateSiteRun

add(JIPipeProject, JIPipeDataSlot) - Method in class org.hkijena.jipipe.api.data.JIPipeMergedDataSlotTable

Adds an JIPipeExportedDataTable

add(JIPipeProject, JIPipeDataSlot, JIPipeExportedDataTable) - Method in class org.hkijena.jipipe.api.data.JIPipeMergedExportedDataTable

Adds an JIPipeExportedDataTable

add(JIPipeParameterCollection, String, JIPipeParameterTree.Node) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree

Adds a new JIPipeParameterCollection into this collection.

add(Point) - Method in class org.hkijena.jipipe.utils.PointRange

Adds the point's x and y coordinates to all points

ADD_MASK_QUALIFIER - Static variable in class org.hkijena.jipipe.extensions.imagejalgorithms.ImageJAlgorithmsExtension

Conversion rules that convert any input data type into their respective mask data type

addActionListener(ActionListener) - Method in class org.hkijena.jipipe.ui.components.FancyTextField

Adds a listener for when the search text changes

addActionListener(ActionListener) - Method in class org.hkijena.jipipe.ui.components.PathEditor

Adds a listener for when the path property changes

addActionListener(ActionListener) - Method in class org.hkijena.jipipe.ui.components.SearchTextField

Adds a listener for when the search text changes

addAlgorithm(JsonNodeInfo) - Method in class org.hkijena.jipipe.JIPipeJsonExtension

Adds a new node type of specified type

AddAlgorithmSlotPanel - Class in org.hkijena.jipipe.ui.components

UI that adds slots to an algorithm

AddAlgorithmSlotPanel(JIPipeGraphNode, JIPipeSlotType, JIPipeGraphHistory) - Constructor for class org.hkijena.jipipe.ui.components.AddAlgorithmSlotPanel

addAnnotationColumn(String) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.AnnotationTableData

Adds a new column that contains annotation data and returns its index- If the column already exists, its index is returned.

AddAnnotationColumnsAlgorithm - Class in org.hkijena.jipipe.extensions.tables.algorithms

Algorithm that integrates columns

AddAnnotationColumnsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.AddAnnotationColumnsAlgorithm

Creates a new instance

AddAnnotationColumnsAlgorithm(AddAnnotationColumnsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.AddAnnotationColumnsAlgorithm

Creates a copy

addAnnotationToAllData(JIPipeAnnotation, boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

Adds an annotation to all existing data

addButton(String, ActionListener) - Method in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog

addChild(String, JIPipeParameterTree.Node) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node

addColumn() - Method in class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2D

Adds a new column

addColumn(ParameterTable.ParameterColumn, Object) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable

Adds a new column to the table

addColumn(String, boolean) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Adds a column with the given name.

addColumn(Component) - Method in class org.hkijena.jipipe.ui.components.FormPanel.GroupHeaderPanel

Adds an additional component on the right hand side

addCompartment(String) - Method in class org.hkijena.jipipe.api.JIPipeProject

Adds a new project compartment

addCompartment(JIPipeProjectCompartment) - Method in class org.hkijena.jipipe.api.JIPipeProject

Adds an existing compartment instance

AddCompartmentGraphHistorySnapshot - Class in org.hkijena.jipipe.api.history

AddCompartmentGraphHistorySnapshot(JIPipeProject, String) - Constructor for class org.hkijena.jipipe.api.history.AddCompartmentGraphHistorySnapshot

addContent(GraphNodeParameterReference) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceGroup

Adds a new element into the group.

addContent(Collection<GraphNodeParameterReference>) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceGroup

Adds multiple elements.

addCustomEntriesToTable(UIDefaults) - Method in class org.hkijena.jipipe.utils.ModernMetalTheme

Add this theme's custom entries to the defaults table.

addData(JIPipeData, List<JIPipeAnnotation>) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

Adds a data row

addData(JIPipeData) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

Adds a data row

addData(JIPipeDataSlot, int) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch

Adds the data row of a given slot.

AddDynamicParameterPanel - Class in org.hkijena.jipipe.ui.components

UI that adds slots to an algorithm

AddDynamicParameterPanel(JIPipeDynamicParameterCollection) - Constructor for class org.hkijena.jipipe.ui.components.AddDynamicParameterPanel

addEntry(UserFriendlyErrorUI.Entry) - Method in class org.hkijena.jipipe.ui.components.UserFriendlyErrorUI

Adds an entry to the UI

addEscapeListener(JDialog) - Static method in class org.hkijena.jipipe.utils.UIUtils

Makes a JDialog close when the escape key is hit

addFillerGridBagComponent(Container, int, int) - Static method in class org.hkijena.jipipe.utils.UIUtils

Equivalent of Box.verticalGlue() for GridBagLayout

addGlobalAnnotation(JIPipeAnnotation, JIPipeAnnotationMergeStrategy) - Method in class org.hkijena.jipipe.api.nodes.JIPipeDataBatch

Adds an annotation to the annotation list

addGlobalAnnotation(JIPipeAnnotation, JIPipeAnnotationMergeStrategy) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch

Adds an annotation to the annotation list

addGlobalAnnotations(List<JIPipeAnnotation>, JIPipeAnnotationMergeStrategy) - Method in class org.hkijena.jipipe.api.nodes.JIPipeDataBatch

Adds annotations to the global annotation storage of this interface.

addGlobalAnnotations(List<JIPipeAnnotation>, JIPipeAnnotationMergeStrategy) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch

Adds annotations to the global annotation storage of this interface.

addGroupHeader(String, Icon) - Method in class org.hkijena.jipipe.ui.components.FormPanel

Adds a group header

addGroups(Collection<GraphNodeParameterReferenceGroup>) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameters

Adds multiple groups

addInputSlot(String, Class<? extends JIPipeData>) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder

Adds an input slot

addItem(Object) - Method in class org.hkijena.jipipe.ui.ijupdater.IJProgressAdapter

addItem(Object) - Method in class org.hkijena.jipipe.ui.ijupdater.ProgressAdapter

addMessage(MessagePanel.MessageType, String, JButton) - Method in class org.hkijena.jipipe.ui.components.MessagePanel

addNameToColumnIdentifiers(DefaultTableModel, String) - Static method in class org.hkijena.jipipe.utils.TableUtils

Adds a name to columns

addNewGroup() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameters

Adds a new empty group

addNewInstance() - Method in class org.hkijena.jipipe.extensions.parameters.collections.ListParameter

Adds a new instance of the content class Override this method for types that cannot be default-constructed

addNewInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DoubleList

addNewInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.FloatList

addNewInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.IntegerList

addNewInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.StringList

AddNodeGraphHistorySnapshot - Class in org.hkijena.jipipe.api.history

AddNodeGraphHistorySnapshot(JIPipeGraph, Set<JIPipeGraphNode>) - Constructor for class org.hkijena.jipipe.api.history.AddNodeGraphHistorySnapshot

AddNoise2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise

Wrapper around ImageProcessor

AddNoise2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.AddNoise2DAlgorithm

Instantiates a new node type.

AddNoise2DAlgorithm(AddNoise2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.AddNoise2DAlgorithm

Instantiates a new node type.

addNumericColumn(String) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Adds a string column with the given name.

addOutputData(String, JIPipeData) - Method in class org.hkijena.jipipe.api.nodes.JIPipeDataBatch

Writes output data into the provided slot Please note that annotations should be set up till this point

addOutputData(String, JIPipeData, List<JIPipeAnnotation>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeDataBatch

Writes output data into the provided slot Please note that annotations should be set up till this point

addOutputData(JIPipeDataSlot, JIPipeData) - Method in class org.hkijena.jipipe.api.nodes.JIPipeDataBatch

Writes output data into the provided slot Please note that annotations that are added to all traits should be set up till this point

addOutputData(JIPipeDataSlot, JIPipeData, List<JIPipeAnnotation>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeDataBatch

Writes output data into the provided slot Please note that annotations that are added to all traits should be set up till this point

addOutputData(String, JIPipeData) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch

Writes output data into the provided slot Please note that annotations should be set up till this point

addOutputData(String, JIPipeData, List<JIPipeAnnotation>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch

Writes output data into the provided slot Please note that annotations should be set up till this point

addOutputData(JIPipeDataSlot, JIPipeData) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch

Writes output data into the provided slot Please note that annotations that are added to all traits should be set up till this point

addOutputData(JIPipeDataSlot, JIPipeData, List<JIPipeAnnotation>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch

Writes output data into the provided slot Please note that annotations that are added to all traits should be set up till this point

addOutputSlot(String, Class<? extends JIPipeData>, String) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder

Adds an output slot

addOutputSlot(String, Class<? extends JIPipeData>, String, Map<Class<? extends JIPipeData>, Class<? extends JIPipeData>>) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder

Adds an output slot

addParameter(JIPipeMutableParameterAccess) - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection

Adds a new parameter.

addParameter(String, Class<?>) - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection

Adds a new parameter

addPopupMenuToComponent(AbstractButton) - Static method in class org.hkijena.jipipe.utils.UIUtils

Adds a popup menu to a button.

addPopupMenuToComponent(AbstractButton, JPopupMenu) - Static method in class org.hkijena.jipipe.utils.UIUtils

Adds an existing popup menu to a button

addRecentJsonExtension(Path) - Method in class org.hkijena.jipipe.extensions.settings.ProjectsSettings

Adds a JSON extension file to the list of recent JSON extensions

addRecentProject(Path) - Method in class org.hkijena.jipipe.extensions.settings.ProjectsSettings

Adds a project file to the list of recent projects

addReloadablePopupMenuToComponent(AbstractButton, JPopupMenu, Runnable) - Static method in class org.hkijena.jipipe.utils.UIUtils

Adds an existing popup menu to a button Adds a function that is run before the popup is shown

addRow() - Method in class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2D

Adds a new row

addRow(List<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable

Adds a row with raw values.

addRow() - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable

Creates a new empty row

addRow() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Adds a new row

addRows(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Adds multiple rows

addSeries(PlotDataSeries) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData

Adds a new series into this plot

addSeries() - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotBuilderUI

Adds a new series

addSingletonTab(String, String, Icon, Component, boolean) - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane

Adds a tab that can be silently closed and brought up again

addSingletonTab(String, String, Icon, Component, DocumentTabPane.CloseMode, boolean) - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane

Adds a tab that can be silently closed and brought up again

addSlot(String, JIPipeDataSlotInfo, boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

Adds a slots

addSlot(JIPipeDataSlotInfo) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder

Adds a slot

addSlot(String, JIPipeDataSlotInfo, boolean) - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration

addSlot(String, JIPipeDataSlotInfo, boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeIOSlotConfiguration

addSlot(String, JIPipeDataSlotInfo, boolean) - Method in class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterAlgorithmSlotConfiguration

addSnapshotBefore(JIPipeAlgorithmGraphHistorySnapshot) - Method in class org.hkijena.jipipe.api.history.JIPipeGraphHistory

Adds a snapshot into the stack

addStringColumn(String) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Adds a string column with the given name.

addTab(String, Icon, Component, DocumentTabPane.CloseMode, boolean) - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane

Adds a new tab

addTab(String, Icon, Component, DocumentTabPane.CloseMode) - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane

Adds a new tab

addTableModelListener(TableModelListener) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

addTableModelListener(TableModelListener) - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable

addTableModelListener(TableModelListener) - Method in class org.hkijena.jipipe.api.data.JIPipeMergedDataSlotTable

addTableModelListener(TableModelListener) - Method in class org.hkijena.jipipe.api.data.JIPipeMergedExportedDataTable

addTableModelListener(TableModelListener) - Method in class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2D

addTableModelListener(TableModelListener) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable

addTableModelListener(TableModelListener) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

addTableModelListener(TableModelListener) - Method in class org.hkijena.jipipe.ui.batchassistant.DataSlotTableUI.WrapperTableModel

addTableModelListener(TableModelListener) - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheDataSlotTableUI.WrapperTableModel

addText(String) - Method in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog

addText(String, SimpleAttributeSet) - Method in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog

addTo(JIPipeProject, String) - Method in class org.hkijena.jipipe.api.compartments.JIPipeExportedCompartment

Adds the compartment to a project as the specified compartment name

addToForm(T, MarkdownDocument) - Method in class org.hkijena.jipipe.ui.components.FormPanel

Adds a component to the form

addToForm(T, Component, MarkdownDocument) - Method in class org.hkijena.jipipe.ui.components.FormPanel

Adds a component to the form

addToMajor(int, boolean) - Method in class org.hkijena.jipipe.ui.grapheditor.connections.NonCollidingRectangularLineDrawer

addToMajor(int) - Method in class org.hkijena.jipipe.ui.grapheditor.connections.RectangularLineDrawer

addToMinor(int, boolean) - Method in class org.hkijena.jipipe.ui.grapheditor.connections.NonCollidingRectangularLineDrawer

addToMinor(int) - Method in class org.hkijena.jipipe.ui.grapheditor.connections.RectangularLineDrawer

addToRoiManager(RoiManager) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData

Adds the ROI to an existing ROI manager instance

addToSelection(JIPipeNodeUI) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

Adds an algorithm to the selection

addToSelection(JIPipeNodeUI) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

Adds an algorithm to the selection

addToTable(ResultsTable) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Adds the table to an existing table

addUpdateSite(UpdateSite) - Method in class org.hkijena.jipipe.ui.ijupdater.JIPipeImageJPluginManager

addVerticalGlue() - Method in class org.hkijena.jipipe.ui.components.FormPanel

Adds a component that acts as Box.verticalGlue()

addVerticalGlue(Component, MarkdownDocument) - Method in class org.hkijena.jipipe.ui.components.FormPanel

Adds a vertical glue component

addWideToForm(T, MarkdownDocument) - Method in class org.hkijena.jipipe.ui.components.FormPanel

Adds a component.

adjustmentValueChanged(AdjustmentEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorMinimap

AlgorithmBackup(JIPipeGraphNode) - Constructor for class org.hkijena.jipipe.api.testbench.JIPipeTestbenchSnapshot.AlgorithmBackup

AlgorithmDeselectedEvent(JIPipeNodeInfoPicker, JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.ui.components.JIPipeNodeInfoPicker.AlgorithmDeselectedEvent

AlgorithmEvent - Class in org.hkijena.jipipe.ui.events

An event around JIPipeNodeUI

AlgorithmEvent(JIPipeNodeUI) - Constructor for class org.hkijena.jipipe.ui.events.AlgorithmEvent

Creates a new event

AlgorithmFinderSuccessEvent - Class in org.hkijena.jipipe.ui.events

Generated when the algorithm finder successfully found a connection

AlgorithmFinderSuccessEvent(JIPipeDataSlot, JIPipeDataSlot) - Constructor for class org.hkijena.jipipe.ui.events.AlgorithmFinderSuccessEvent

AlgorithmGraphCopyNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard

AlgorithmGraphCopyNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.AlgorithmGraphCopyNodeUIContextAction

AlgorithmGraphCutNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard

AlgorithmGraphCutNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.AlgorithmGraphCutNodeUIContextAction

AlgorithmGraphPasteNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard

AlgorithmGraphPasteNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.AlgorithmGraphPasteNodeUIContextAction

AlgorithmSelectedEvent - Class in org.hkijena.jipipe.ui.events

Generated when an algorithm is selected

AlgorithmSelectedEvent(JIPipeNodeUI, boolean) - Constructor for class org.hkijena.jipipe.ui.events.AlgorithmSelectedEvent

AlgorithmSelectionChangedEvent - Class in org.hkijena.jipipe.ui.events

Triggered when An JIPipeGraphCanvasUI selection was changed

AlgorithmSelectionChangedEvent(JIPipeGraphCanvasUI) - Constructor for class org.hkijena.jipipe.ui.events.AlgorithmSelectionChangedEvent

AlgorithmUIActionRequestedEvent - Class in org.hkijena.jipipe.ui.events

An action that is requested by an JIPipeNodeUI and passed down to a JIPipeGraphEditorUI

AlgorithmUIActionRequestedEvent(JIPipeNodeUI, Object) - Constructor for class org.hkijena.jipipe.ui.events.AlgorithmUIActionRequestedEvent

Initializes a new instance

ALL_DESCRIPTIONS - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.ImageStatisticsSetParameter

ALLOWED_PARAMETER_CLASSES - Static variable in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.MacroWrapperAlgorithm

ALLOWED_PARAMETER_TYPES - Static variable in class org.hkijena.jipipe.extensions.clij2.CLIJExtension

allowOutputSlotInheritance(boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder

Enables/disables if slot inheritance is allowed

allowsInputSlots() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

allowsInputSlots() - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration

allowsOutputSlots() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

allowsOutputSlots() - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration

Anchor - Enum in org.hkijena.jipipe.extensions.parameters.roi

An anchor

AnchorParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.roi

Editor for Margin

AnchorParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.roi.AnchorParameterEditorUI

AnnotateAll - Class in org.hkijena.jipipe.extensions.annotation.algorithms

Algorithm that annotates all data with the same annotation

AnnotateAll(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateAll

AnnotateAll(AnnotateAll) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateAll

Copies the algorithm

AnnotateWithAnnotationTable - Class in org.hkijena.jipipe.extensions.annotation.algorithms

Algorithm that merges the annotations of all inputs and outputs the data with the shared annotations

AnnotateWithAnnotationTable(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateWithAnnotationTable

Creates a new instance

AnnotateWithAnnotationTable(AnnotateWithAnnotationTable) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateWithAnnotationTable

Creates a copy

AnnotateWithDataString - Class in org.hkijena.jipipe.extensions.annotation.algorithms

Generates annotations from filenames

AnnotateWithDataString(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateWithDataString

New instance

AnnotateWithDataString(AnnotateWithDataString) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateWithDataString

Copies the algorithm

ANNOTATION_COLUMN_IDENTIFIER - Static variable in class org.hkijena.jipipe.extensions.tables.datatypes.AnnotationTableData

annotationListToPython(List<JIPipeAnnotation>) - Static method in class org.hkijena.jipipe.api.data.JIPipeAnnotation

Converts a list of annotations into a Python dictionary

annotationMapToPython(Map<String, JIPipeAnnotation>) - Static method in class org.hkijena.jipipe.api.data.JIPipeAnnotation

Converts a map of annotations into a Python dictionary

AnnotationsExtension - Class in org.hkijena.jipipe.extensions.annotation

Extension that provides data types and algorithms to modify data annotations

AnnotationsExtension() - Constructor for class org.hkijena.jipipe.extensions.annotation.AnnotationsExtension

AnnotationsNodeTypeCategory - Class in org.hkijena.jipipe.api.nodes.categories

AnnotationsNodeTypeCategory() - Constructor for class org.hkijena.jipipe.api.nodes.categories.AnnotationsNodeTypeCategory

AnnotationTableData - Class in org.hkijena.jipipe.extensions.tables.datatypes

A special kind of ResultsTableData that stores annotation columns.

AnnotationTableData() - Constructor for class org.hkijena.jipipe.extensions.tables.datatypes.AnnotationTableData

AnnotationTableData(Map<String, TableColumn>) - Constructor for class org.hkijena.jipipe.extensions.tables.datatypes.AnnotationTableData

AnnotationTableData(Collection<TableColumn>) - Constructor for class org.hkijena.jipipe.extensions.tables.datatypes.AnnotationTableData

AnnotationTableData(Path) - Constructor for class org.hkijena.jipipe.extensions.tables.datatypes.AnnotationTableData

AnnotationTableData(ResultsTable) - Constructor for class org.hkijena.jipipe.extensions.tables.datatypes.AnnotationTableData

AnnotationTableData(ResultsTableData) - Constructor for class org.hkijena.jipipe.extensions.tables.datatypes.AnnotationTableData

AnnotationTableFromFile - Class in org.hkijena.jipipe.extensions.annotation.datasources

Imports AnnotationTableData from a file

AnnotationTableFromFile(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.annotation.datasources.AnnotationTableFromFile

AnnotationTableFromFile(AnnotationTableFromFile) - Constructor for class org.hkijena.jipipe.extensions.annotation.datasources.AnnotationTableFromFile

Copies the algorithm

AnnotationTableToPaths - Class in org.hkijena.jipipe.extensions.filesystem.algorithms

Filters input files

AnnotationTableToPaths(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.AnnotationTableToPaths

Instantiates the algorithm

AnnotationTableToPaths(AnnotationTableToPaths) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.AnnotationTableToPaths

Copies the algorithm

AnnotationToPath - Class in org.hkijena.jipipe.extensions.filesystem.algorithms

Filters input files

AnnotationToPath(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.AnnotationToPath

Instantiates the algorithm

AnnotationToPath(AnnotationToPath) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.AnnotationToPath

Copies the algorithm

annotationType() - Method in class org.hkijena.jipipe.api.JIPipeDefaultDocumentation

annotationType() - Method in class org.hkijena.jipipe.api.nodes.DefaultJIPipeInputSlot

annotationType() - Method in class org.hkijena.jipipe.api.nodes.DefaultJIPipeOutputSlot

AppendRectangularRoiAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

Wrapper around RoiManager

AppendRectangularRoiAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.AppendRectangularRoiAlgorithm

Instantiates a new node type.

AppendRectangularRoiAlgorithm(AppendRectangularRoiAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.AppendRectangularRoiAlgorithm

Instantiates a new node type.

apply(double) - Method in enum org.hkijena.jipipe.extensions.parameters.colors.ColorMap

Generates a color according to the color map

apply(String) - Method in class org.hkijena.jipipe.extensions.parameters.patterns.StringPatternExtraction

apply(Integer) - Method in class org.hkijena.jipipe.extensions.parameters.roi.IntModificationParameter

apply(Rectangle) - Method in class org.hkijena.jipipe.extensions.parameters.roi.Margin

Generates the rectangle defined by the definition.

apply(Collection<Boolean>) - Method in enum org.hkijena.jipipe.extensions.parameters.util.LogicalOperation

Apply the logical operation for the items

apply(TableColumn) - Method in interface org.hkijena.jipipe.extensions.tables.ColumnOperation

Applies the operation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.AbsoluteColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.CeilingColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.ClampNegativeColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.ClampPositiveColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.DegreeToRadiansColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.ExpColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.FactorizeColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.FloorColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.LnColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.OccurrencesColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.RadiansToDegreeColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.RemoveNaNColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.SortAscendingColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.SortDescendingColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.SqrtColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.SquareColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.ToNumericColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsAverageIntegratingColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsCountIntegratingColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsCountNonZeroIntegratingColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsCumulativeSumColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsGeometricMeanIntegratingColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsKurtosisIntegratingColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsMaxIntegratingColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsMedianIntegratingColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsMinIntegratingColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsSkewnessIntegratingColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsStandardDeviationIntegratingColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsVarianceIntegratingColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsWeightedSumColumnOperation

ApplyDistanceTransform2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math

Wrapper around EDM

ApplyDistanceTransform2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyDistanceTransform2DAlgorithm

Instantiates a new node type.

ApplyDistanceTransform2DAlgorithm(ApplyDistanceTransform2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyDistanceTransform2DAlgorithm

Instantiates a new node type.

applyInheritanceConversion(JIPipeDataSlotInfo, Class<? extends JIPipeData>) - Static method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo

Applies inheritance conversion.

ApplyMath2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math

Wrapper around ImageProcessor

ApplyMath2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyMath2DAlgorithm

Instantiates a new node type.

ApplyMath2DAlgorithm(ApplyMath2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyMath2DAlgorithm

Instantiates a new node type.

ApplyMath2DAlgorithm.Transformation - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math

Available transformation functions

applyOperation(List<ResultsTableData.Index>, ConvertingColumnOperation) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Applies an operation to the selected cells

ApplyRun - Class in org.hkijena.jipipe.ui.ijupdater

ApplyRun(FilesCollection) - Constructor for class org.hkijena.jipipe.ui.ijupdater.ApplyRun

ApplyTransform2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math

Wrapper around ImageProcessor

ApplyTransform2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyTransform2DAlgorithm

Instantiates a new node type.

ApplyTransform2DAlgorithm(ApplyTransform2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyTransform2DAlgorithm

Instantiates a new node type.

ApplyTransform2DAlgorithm.Transformation - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math

Available transformation functions

ArrangeChannelsAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color

Wrapper around ChannelArranger

ArrangeChannelsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.ArrangeChannelsAlgorithm

Instantiates a new node type.

ArrangeChannelsAlgorithm(ArrangeChannelsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.ArrangeChannelsAlgorithm

Creates a copy

ArrowLessScrollBarUI - Class in org.hkijena.jipipe.utils

ArrowLessScrollBarUI() - Constructor for class org.hkijena.jipipe.utils.ArrowLessScrollBarUI

askOpenInCurrentWindow(Component, String) - Static method in class org.hkijena.jipipe.utils.UIUtils

Asks the user how to open a project: In the current window or a new window

assignButtonMenu - Variable in class org.hkijena.jipipe.ui.grapheditor.JIPipeDataSlotUI

assignData(String, TableColumn) - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotSeriesBuilder

Assigns data to a column

assignDataStoragePaths() - Method in class org.hkijena.jipipe.api.JIPipeRun

Iterates through output slots and assigns the data storage paths

autoClean(boolean, boolean) - Method in class org.hkijena.jipipe.api.JIPipeProjectCache

Safely removes cache entries that are not accessible anymore (e.g. an algorithm was removed from the graph; or states where the slots do not exist anymore)

autoCreate() - Method in class org.hkijena.jipipe.api.nodes.DefaultJIPipeInputSlot

autoCreate() - Method in class org.hkijena.jipipe.api.nodes.DefaultJIPipeOutputSlot

autoExpandLeftTop() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

autoLayout() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

Applies a full auto-layout method

autoLayoutAll() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

Auto-layouts all UIs

autoPlaceCloseToCursor(JIPipeNodeUI) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

autoSizeColumns() - Method in class org.hkijena.jipipe.ui.tableanalyzer.JIPipeTableEditor

Auto-sizes all columns

AutoThreshold2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold

Segmenter node that thresholds via an auto threshold

AutoThreshold2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.AutoThreshold2DAlgorithm

AutoThreshold2DAlgorithm(AutoThreshold2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.AutoThreshold2DAlgorithm

Copies the algorithm

B

b0 - Variable in class org.hkijena.jipipe.ui.grapheditor.connections.RectangularLine

b1 - Variable in class org.hkijena.jipipe.ui.grapheditor.connections.RectangularLine

BackgroundPanel - Class in org.hkijena.jipipe.ui.components

BackgroundPanel(BufferedImage, boolean) - Constructor for class org.hkijena.jipipe.ui.components.BackgroundPanel

BarBoxAndWhiskerCategoryPlotData - Class in org.hkijena.jipipe.extensions.plots.datatypes

Generates a bar category plot

BarBoxAndWhiskerCategoryPlotData() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.BarBoxAndWhiskerCategoryPlotData

Creates a new instance

BarBoxAndWhiskerCategoryPlotData(BarBoxAndWhiskerCategoryPlotData) - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.BarBoxAndWhiskerCategoryPlotData

Creates a copy

BarCategoryPlotData - Class in org.hkijena.jipipe.extensions.plots.datatypes

Generates a bar category plot

BarCategoryPlotData() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.BarCategoryPlotData

Creates a new instance

BarCategoryPlotData(BarCategoryPlotData) - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.BarCategoryPlotData

Creates a copy

BarStatisticalCategoryPlotData - Class in org.hkijena.jipipe.extensions.plots.datatypes

Generates a bar category plot

BarStatisticalCategoryPlotData() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.BarStatisticalCategoryPlotData

Creates a new instance

BarStatisticalCategoryPlotData(BarStatisticalCategoryPlotData) - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.BarStatisticalCategoryPlotData

Creates a copy

beginModificationBlock() - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection

Halts all ParameterStructureChangedEvent until endModificationBlock() is called.

BioFormatsExporter - Class in org.hkijena.jipipe.extensions.imagejdatatypes.algorithms

BioFormatsExporter(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.BioFormatsExporter

BioFormatsExporter(BioFormatsExporter) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.BioFormatsExporter

BioFormatsImporter - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datasources

BioFormats importer wrapper

BioFormatsImporter(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter

BioFormatsImporter(BioFormatsImporter) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter

Copies the algorithm

bold - Variable in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog

BooleanParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.primitives

Parameter editor for boolean data

BooleanParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.BooleanParameterEditorUI

BooleanParameterTypeInfo - Class in org.hkijena.jipipe.extensions.parameters.primitives

Info for Boolean

BooleanParameterTypeInfo() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.BooleanParameterTypeInfo

BooleanPrimitiveParameterTypeInfo - Class in org.hkijena.jipipe.extensions.parameters.primitives

Info for Boolean

BooleanPrimitiveParameterTypeInfo() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.BooleanPrimitiveParameterTypeInfo

BORDER_COLOR - Static variable in class org.hkijena.jipipe.api.nodes.categories.AnnotationsNodeTypeCategory

BORDER_COLOR - Static variable in class org.hkijena.jipipe.api.nodes.categories.DataSourceNodeTypeCategory

BORDER_COLOR - Static variable in class org.hkijena.jipipe.api.nodes.categories.FileSystemNodeTypeCategory

BORDER_COLOR - Static variable in class org.hkijena.jipipe.api.nodes.categories.ImagesNodeTypeCategory

BORDER_COLOR - Static variable in class org.hkijena.jipipe.api.nodes.categories.MiscellaneousNodeTypeCategory

BORDER_COLOR - Static variable in class org.hkijena.jipipe.api.nodes.categories.RoiNodeTypeCategory

BORDER_COLOR - Static variable in class org.hkijena.jipipe.api.nodes.categories.TableNodeTypeCategory

BoxAndWhiskerCategoryPlotData - Class in org.hkijena.jipipe.extensions.plots.datatypes

Contains data for box and whisker category plots category plots.

BoxAndWhiskerCategoryPlotData() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.BoxAndWhiskerCategoryPlotData

Creates a new instance

BoxAndWhiskerCategoryPlotData(BoxAndWhiskerCategoryPlotData) - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.BoxAndWhiskerCategoryPlotData

Creates a copy

BoxFilter2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur

Wrapper around ImageProcessor

BoxFilter2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.BoxFilter2DAlgorithm

Instantiates a new node type.

BoxFilter2DAlgorithm(BoxFilter2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.BoxFilter2DAlgorithm

Instantiates a new node type.

BoxFilter3DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur

Wrapper around GaussianBlur

BoxFilter3DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.BoxFilter3DAlgorithm

Instantiates a new node type.

BoxFilter3DAlgorithm(BoxFilter3DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.BoxFilter3DAlgorithm

Instantiates a new node type.

BrightSpotsSegmentation2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold

Applies Bright spots segmentation

BrightSpotsSegmentation2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.BrightSpotsSegmentation2DAlgorithm

BrightSpotsSegmentation2DAlgorithm(BrightSpotsSegmentation2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.BrightSpotsSegmentation2DAlgorithm

Copies the algorithm

build() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder

build() - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess.Builder

Returns the finished object

builder() - Static method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

builder() - Static method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess

Creates a new builder

Builder() - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess.Builder

buildSeries() - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotSeriesBuilder

Generates a series

BusyCursor - Class in org.hkijena.jipipe.utils

A cursor for a component to indicate that some process is running

BusyCursor(Component) - Constructor for class org.hkijena.jipipe.utils.BusyCursor

ByteParameterTypeInfo - Class in org.hkijena.jipipe.extensions.parameters.primitives

Info for Byte

ByteParameterTypeInfo() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.ByteParameterTypeInfo

BytePrimitiveParameterTypeInfo - Class in org.hkijena.jipipe.extensions.parameters.primitives

Info for Byte

BytePrimitiveParameterTypeInfo() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.BytePrimitiveParameterTypeInfo

ByteRangeParameterGenerator - Class in org.hkijena.jipipe.extensions.parameters.generators

Generates Byte

ByteRangeParameterGenerator(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.extensions.parameters.generators.ByteRangeParameterGenerator

Creates a new instance

C

calculateGridSize() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeDataSlotUI

Calculates the size in grid coordinates

calculateGridSize() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeHorizontalDataSlotUI

calculateGridSize() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeHorizontalNodeUI

calculateGridSize() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI

Calculates the size in grid coordinates

calculateGridSize() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeVerticalDataSlotUI

calculateGridSize() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeVerticalNodeUI

calculateMaxTabHeight(int) - Method in class org.hkijena.jipipe.utils.CustomTabbedPaneUI

calibrate(ImagePlus, CalibrationMode, double, double) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.DisplayRangeCalibrationAlgorithm

Calibrates the image.

CalibrationMode - Enum in org.hkijena.jipipe.extensions.imagejdatatypes.util

canAddInputSlot() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

canAddInputSlot() - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration

canAddOutputSlot() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

canAddOutputSlot() - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration

canAutoPassThrough() - Method in class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

Returns true if the algorithm can automatically apply pass-through This is only possible if there is at most one input and at most one output.

cancel - Variable in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog

cancel(JIPipeRunnable) - Method in class org.hkijena.jipipe.ui.running.JIPipeRunnerQueue

Cancels a runnable

cancel(boolean) - Method in class org.hkijena.jipipe.utils.InstantFuture

canConnect(JIPipeDataSlot, JIPipeDataSlot, boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Slow implementation of connection checking that tests for graph cycles

canConnectFast(JIPipeDataSlot, JIPipeDataSlot, boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Fast implementation of connection checking without copying the graph

canConvertImageJToJIPipe(Object) - Method in interface org.hkijena.jipipe.api.compat.ImageJDatatypeAdapter

Returns true if this adapter can convert to the specified JIPipe data type

canConvertImageJToJIPipe(Object) - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageDataImageJAdapter

canConvertImageJToJIPipe(Object) - Method in class org.hkijena.jipipe.extensions.filesystem.compat.PathDataImageJAdapter

canConvertImageJToJIPipe(Object) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ImgPlusDataImageJAdapter

canConvertImageJToJIPipe(Object) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.OMEImageDataImageJAdapter

canConvertImageJToJIPipe(Object) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ResultsTableDataImageJAdapter

canConvertImageJToJIPipe(Object) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ROIDataImageJAdapter

canConvertJIPipeToImageJ(JIPipeData) - Method in interface org.hkijena.jipipe.api.compat.ImageJDatatypeAdapter

Returns true if this adapter can convert to the specified ImageJ data type

canConvertJIPipeToImageJ(JIPipeData) - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageDataImageJAdapter

canConvertJIPipeToImageJ(JIPipeData) - Method in class org.hkijena.jipipe.extensions.filesystem.compat.PathDataImageJAdapter

canConvertJIPipeToImageJ(JIPipeData) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ImgPlusDataImageJAdapter

canConvertJIPipeToImageJ(JIPipeData) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.OMEImageDataImageJAdapter

canConvertJIPipeToImageJ(JIPipeData) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ResultsTableDataImageJAdapter

canConvertJIPipeToImageJ(JIPipeData) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ROIDataImageJAdapter

canCreateCompatibleInputSlot(Class<? extends JIPipeData>) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

Returns if an input slot with specified type can be created

canCreateCompatibleInputSlot(Class<? extends JIPipeData>) - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration

canExtract() - Method in class org.hkijena.jipipe.api.nodes.categories.InternalNodeTypeCategory

canExtract() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeTypeCategory

Returns if the node can be extracted (copied) from the graph

canModifyInputSlots() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

canModifyInputSlots() - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration

canModifyOutputSlots() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

canModifyOutputSlots() - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration

canPassThrough() - Method in class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

Returns true if the algorithm can apply pass-through.

canPassThrough() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateWithAnnotationTable

canPassThrough() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.MergeAnnotations

canPassThrough() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ExportDataByParameter

canRegister() - Method in class org.hkijena.jipipe.api.registries.JIPipeDefaultNodeRegistrationTask

canRegister() - Method in interface org.hkijena.jipipe.api.registries.JIPipeNodeRegistrationTask

Returns true if the registration can be done This function should fail as fast as possible

canRegister() - Method in class org.hkijena.jipipe.extensions.jsonextensionloader.JsonExtensionRegistrationTask

canUserDelete(JIPipeGraphNode) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Returns true if the user can delete the algorithm

canUserDelete() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Returns true if a user can delete this algorithm

canUserDisconnect(JIPipeDataSlot, JIPipeDataSlot) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Returns true if the user can disconnect the slots

CategoryPlotData - Class in org.hkijena.jipipe.extensions.plots.datatypes

Contains data for category plots.

CategoryPlotData() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.CategoryPlotData

Creates a new instance

CategoryPlotData(CategoryPlotData) - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.CategoryPlotData

Creates a copy

CeilingColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting

Applies a floor function

CeilingColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.CeilingColumnOperation

center - Variable in class org.hkijena.jipipe.utils.PointRange

changed(DocumentEvent) - Method in class org.hkijena.jipipe.ui.components.DocumentChangeListener

All-in-one event for insertion, removal, change

changedUpdate(DocumentEvent) - Method in class org.hkijena.jipipe.ui.components.DocumentChangeListener

ChangeRoiPropertiesAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

Wrapper around RoiManager

ChangeRoiPropertiesAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesAlgorithm

Instantiates a new node type.

ChangeRoiPropertiesAlgorithm(ChangeRoiPropertiesAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesAlgorithm

Instantiates a new node type.

CheckBoxIcon - Class in org.hkijena.jipipe.utils

Taken from MetalIconFactory

CheckBoxIcon() - Constructor for class org.hkijena.jipipe.utils.CheckBoxIcon

checkExtensionDependencies(JIPipeWorkbench) - Static method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWindow

checkIfWithin(Object, double, double, double, boolean, boolean) - Method in class org.hkijena.jipipe.api.JIPipeValidityReport

Reports as invalid if the value is not within the limits

checkNonEmpty(String, Object) - Method in class org.hkijena.jipipe.api.JIPipeValidityReport

Reports as invalid if the string value is null or empty

checkNonNull(Object, Object) - Method in class org.hkijena.jipipe.api.JIPipeValidityReport

Reports as invalid if the value is null

checkScriptParametersValidity(JIPipeCustomParameterCollection, JIPipeValidityReport) - Static method in class org.hkijena.jipipe.utils.PythonUtils

checkScriptValidity(String, JIPipeCustomParameterCollection, JIPipeValidityReport) - Static method in class org.hkijena.jipipe.utils.PythonUtils

checkUpdateSites(JIPipeRegistryIssues, List<JIPipeDependency>, Progress) - Method in class org.hkijena.jipipe.JIPipeDefaultRegistry

Checks the update sites of all extensions and stores the results in the issues

choosePath() - Method in class org.hkijena.jipipe.ui.components.PathEditor

Opens the file chooser

CLAHEContrastEnhancer - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast

Applies CLAHE image enhancing

CLAHEContrastEnhancer(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast.CLAHEContrastEnhancer

CLAHEContrastEnhancer(CLAHEContrastEnhancer) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast.CLAHEContrastEnhancer

Copies the algorithm

ClampNegativeColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting

Applies a min(0, x) function

ClampNegativeColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.ClampNegativeColumnOperation

ClampPositiveColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting

Applies a max(0, x) function

ClampPositiveColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.ClampPositiveColumnOperation

cleanupGraph() - Method in class org.hkijena.jipipe.api.JIPipeProject

Re-assigns graph node Ids based on their name

cleanupIds() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Re-assigns new Ids to the all nodes

clear(JIPipeAlgorithm) - Method in class org.hkijena.jipipe.api.JIPipeProjectCache

Removes an algorithm from the cache

clear(JIPipeAlgorithm, JIPipeProjectCache.State) - Method in class org.hkijena.jipipe.api.JIPipeProjectCache

Removes an algorithm from the cache

clear() - Method in class org.hkijena.jipipe.api.JIPipeProjectCache

Removes everything from the cache

clear() - Method in class org.hkijena.jipipe.api.JIPipeValidityReport

Clears the report

clear() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Clears this graph

clear() - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection

Removes all parameters

clear() - Method in class org.hkijena.jipipe.ui.components.FormPanel

Removes all components

clear() - Method in class org.hkijena.jipipe.ui.components.MessagePanel

clearData(boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

Removes all data from this slot

clearInputSlots(boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

Removes all input slots

clearLocations() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Removes all location information added via setLocationWithin()

clearOutputSlots(boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

Removes all output slots

clearSearch() - Method in class org.hkijena.jipipe.ui.components.SearchBox

Clears the search field

clearSelection() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

Clears the list of selected algorithms

clearSelection() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

Clears the algorithm selection

clearSeries() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData

Removes all series

clearSlotData() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Clears all data slots

Clij2Absolute - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Absolute

Clij2Absolute(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Absolute

Creates a new instance

Clij2Absolute(Clij2Absolute) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Absolute

Creates a copy

Clij2AbsoluteDifference - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from AbsoluteDifference

Clij2AbsoluteDifference(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AbsoluteDifference

Creates a new instance

Clij2AbsoluteDifference(Clij2AbsoluteDifference) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AbsoluteDifference

Creates a copy

Clij2AddImageAndScalar - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from AddImageAndScalar

Clij2AddImageAndScalar(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AddImageAndScalar

Creates a new instance

Clij2AddImageAndScalar(Clij2AddImageAndScalar) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AddImageAndScalar

Creates a copy

Clij2AddImages - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from AddImages

Clij2AddImages(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AddImages

Creates a new instance

Clij2AddImages(Clij2AddImages) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AddImages

Creates a copy

Clij2AddImagesWeighted - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from AddImagesWeighted

Clij2AddImagesWeighted(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AddImagesWeighted

Creates a new instance

Clij2AddImagesWeighted(Clij2AddImagesWeighted) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AddImagesWeighted

Creates a copy

Clij2AdjacencyMatrixToTouchMatrix - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from AdjacencyMatrixToTouchMatrix

Clij2AdjacencyMatrixToTouchMatrix(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AdjacencyMatrixToTouchMatrix

Creates a new instance

Clij2AdjacencyMatrixToTouchMatrix(Clij2AdjacencyMatrixToTouchMatrix) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AdjacencyMatrixToTouchMatrix

Creates a copy

Clij2AffineTransform2d - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from AffineTransform2D

Clij2AffineTransform2d(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AffineTransform2d

Creates a new instance

Clij2AffineTransform2d(Clij2AffineTransform2d) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AffineTransform2d

Creates a copy

Clij2AffineTransform3d - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from AffineTransform3D

Clij2AffineTransform3d(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AffineTransform3d

Creates a new instance

Clij2AffineTransform3d(Clij2AffineTransform3d) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AffineTransform3d

Creates a copy

Clij2ApplyVectorField2d - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ApplyVectorField2D

Clij2ApplyVectorField2d(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ApplyVectorField2d

Creates a new instance

Clij2ApplyVectorField2d(Clij2ApplyVectorField2d) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ApplyVectorField2d

Creates a copy

Clij2ApplyVectorField3d - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ApplyVectorField3D

Clij2ApplyVectorField3d(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ApplyVectorField3d

Creates a new instance

Clij2ApplyVectorField3d(Clij2ApplyVectorField3d) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ApplyVectorField3d

Creates a copy

Clij2ArgMaximumZProjection - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ArgMaximumZProjection

Clij2ArgMaximumZProjection(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ArgMaximumZProjection

Creates a new instance

Clij2ArgMaximumZProjection(Clij2ArgMaximumZProjection) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ArgMaximumZProjection

Creates a copy

Clij2AutomaticThreshold - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from AutomaticThreshold

Clij2AutomaticThreshold(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AutomaticThreshold

Creates a new instance

Clij2AutomaticThreshold(Clij2AutomaticThreshold) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AutomaticThreshold

Creates a copy

Clij2AverageDistanceOfNClosestPoints - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from AverageDistanceOfNClosestPoints

Clij2AverageDistanceOfNClosestPoints(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AverageDistanceOfNClosestPoints

Creates a new instance

Clij2AverageDistanceOfNClosestPoints(Clij2AverageDistanceOfNClosestPoints) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AverageDistanceOfNClosestPoints

Creates a copy

Clij2AverageDistanceOfNFarOffPoints - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from AverageDistanceOfNFarOffPoints

Clij2AverageDistanceOfNFarOffPoints(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AverageDistanceOfNFarOffPoints

Creates a new instance

Clij2AverageDistanceOfNFarOffPoints(Clij2AverageDistanceOfNFarOffPoints) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AverageDistanceOfNFarOffPoints

Creates a copy

Clij2AverageDistanceOfTouchingNeighbors - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from AverageDistanceOfTouchingNeighbors

Clij2AverageDistanceOfTouchingNeighbors(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AverageDistanceOfTouchingNeighbors

Creates a new instance

Clij2AverageDistanceOfTouchingNeighbors(Clij2AverageDistanceOfTouchingNeighbors) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AverageDistanceOfTouchingNeighbors

Creates a copy

Clij2BinaryAnd - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from BinaryAnd

Clij2BinaryAnd(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BinaryAnd

Creates a new instance

Clij2BinaryAnd(Clij2BinaryAnd) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BinaryAnd

Creates a copy

Clij2BinaryEdgeDetection - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from BinaryEdgeDetection

Clij2BinaryEdgeDetection(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BinaryEdgeDetection

Creates a new instance

Clij2BinaryEdgeDetection(Clij2BinaryEdgeDetection) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BinaryEdgeDetection

Creates a copy

Clij2BinaryFillHoles - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from BinaryFillHoles

Clij2BinaryFillHoles(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BinaryFillHoles

Creates a new instance

Clij2BinaryFillHoles(Clij2BinaryFillHoles) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BinaryFillHoles

Creates a copy

Clij2BinaryNot - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from BinaryNot

Clij2BinaryNot(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BinaryNot

Creates a new instance

Clij2BinaryNot(Clij2BinaryNot) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BinaryNot

Creates a copy

Clij2BinaryOr - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from BinaryOr

Clij2BinaryOr(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BinaryOr

Creates a new instance

Clij2BinaryOr(Clij2BinaryOr) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BinaryOr

Creates a copy

Clij2BinarySubtract - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from BinarySubtract

Clij2BinarySubtract(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BinarySubtract

Creates a new instance

Clij2BinarySubtract(Clij2BinarySubtract) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BinarySubtract

Creates a copy

Clij2BinaryXOr - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from BinaryXOr

Clij2BinaryXOr(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BinaryXOr

Creates a new instance

Clij2BinaryXOr(Clij2BinaryXOr) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BinaryXOr

Creates a copy

Clij2BottomHatBox - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from BottomHatBox

Clij2BottomHatBox(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BottomHatBox

Creates a new instance

Clij2BottomHatBox(Clij2BottomHatBox) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BottomHatBox

Creates a copy

Clij2BottomHatSphere - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from BottomHatSphere

Clij2BottomHatSphere(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BottomHatSphere

Creates a new instance

Clij2BottomHatSphere(Clij2BottomHatSphere) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BottomHatSphere

Creates a copy

Clij2CentroidsOfLabels - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from CentroidsOfLabels

Clij2CentroidsOfLabels(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CentroidsOfLabels

Creates a new instance

Clij2CentroidsOfLabels(Clij2CentroidsOfLabels) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CentroidsOfLabels

Creates a copy

Clij2CloseIndexGapsInLabelMap - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from CloseIndexGapsInLabelMap

Clij2CloseIndexGapsInLabelMap(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CloseIndexGapsInLabelMap

Creates a new instance

Clij2CloseIndexGapsInLabelMap(Clij2CloseIndexGapsInLabelMap) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CloseIndexGapsInLabelMap

Creates a copy

Clij2ClosingBox - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ClosingBox

Clij2ClosingBox(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ClosingBox

Creates a new instance

Clij2ClosingBox(Clij2ClosingBox) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ClosingBox

Creates a copy

Clij2ClosingDiamond - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ClosingDiamond

Clij2ClosingDiamond(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ClosingDiamond

Creates a new instance

Clij2ClosingDiamond(Clij2ClosingDiamond) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ClosingDiamond

Creates a copy

Clij2CombineHorizontally - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from CombineHorizontally

Clij2CombineHorizontally(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CombineHorizontally

Creates a new instance

Clij2CombineHorizontally(Clij2CombineHorizontally) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CombineHorizontally

Creates a copy

Clij2CombineVertically - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from CombineVertically

Clij2CombineVertically(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CombineVertically

Creates a new instance

Clij2CombineVertically(Clij2CombineVertically) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CombineVertically

Creates a copy

Clij2ConcatenateStacks - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ConcatenateStacks

Clij2ConcatenateStacks(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ConcatenateStacks

Creates a new instance

Clij2ConcatenateStacks(Clij2ConcatenateStacks) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ConcatenateStacks

Creates a copy

Clij2Convolve - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Convolve

Clij2Convolve(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Convolve

Creates a new instance

Clij2Convolve(Clij2Convolve) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Convolve

Creates a copy

Clij2Copy - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Copy

Clij2Copy(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Copy

Creates a new instance

Clij2Copy(Clij2Copy) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Copy

Creates a copy

Clij2CopySlice - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from CopySlice

Clij2CopySlice(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CopySlice

Creates a new instance

Clij2CopySlice(Clij2CopySlice) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CopySlice

Creates a copy

Clij2CountNonZeroPixels2dSphere - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from CountNonZeroPixels2DSphere

Clij2CountNonZeroPixels2dSphere(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountNonZeroPixels2dSphere

Creates a new instance

Clij2CountNonZeroPixels2dSphere(Clij2CountNonZeroPixels2dSphere) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountNonZeroPixels2dSphere

Creates a copy

Clij2CountNonZeroPixelsSliceBySliceSphere - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from CountNonZeroPixelsSliceBySliceSphere

Clij2CountNonZeroPixelsSliceBySliceSphere(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountNonZeroPixelsSliceBySliceSphere

Creates a new instance

Clij2CountNonZeroPixelsSliceBySliceSphere(Clij2CountNonZeroPixelsSliceBySliceSphere) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountNonZeroPixelsSliceBySliceSphere

Creates a copy

Clij2CountNonZeroVoxels3dSphere - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from CountNonZeroVoxels3DSphere

Clij2CountNonZeroVoxels3dSphere(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountNonZeroVoxels3dSphere

Creates a new instance

Clij2CountNonZeroVoxels3dSphere(Clij2CountNonZeroVoxels3dSphere) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountNonZeroVoxels3dSphere

Creates a copy

Clij2CountTouchingNeighbors - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from CountTouchingNeighbors

Clij2CountTouchingNeighbors(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountTouchingNeighbors

Creates a new instance

Clij2CountTouchingNeighbors(Clij2CountTouchingNeighbors) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountTouchingNeighbors

Creates a copy

Clij2Crop2d - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Crop2D

Clij2Crop2d(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Crop2d

Creates a new instance

Clij2Crop2d(Clij2Crop2d) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Crop2d

Creates a copy

Clij2Crop3d - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Crop3D

Clij2Crop3d(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Crop3d

Creates a new instance

Clij2Crop3d(Clij2Crop3d) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Crop3d

Creates a copy

Clij2DepthColorProjection - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from DepthColorProjection

Clij2DepthColorProjection(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DepthColorProjection

Creates a new instance

Clij2DepthColorProjection(Clij2DepthColorProjection) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DepthColorProjection

Creates a copy

Clij2DetectLabelEdges - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from DetectLabelEdges

Clij2DetectLabelEdges(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DetectLabelEdges

Creates a new instance

Clij2DetectLabelEdges(Clij2DetectLabelEdges) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DetectLabelEdges

Creates a copy

Clij2DetectMaximaSliceBySliceBox - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from DetectMaximaSliceBySliceBox

Clij2DetectMaximaSliceBySliceBox(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DetectMaximaSliceBySliceBox

Creates a new instance

Clij2DetectMaximaSliceBySliceBox(Clij2DetectMaximaSliceBySliceBox) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DetectMaximaSliceBySliceBox

Creates a copy

Clij2DetectMinimaSliceBySliceBox - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from DetectMinimaSliceBySliceBox

Clij2DetectMinimaSliceBySliceBox(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DetectMinimaSliceBySliceBox

Creates a new instance

Clij2DetectMinimaSliceBySliceBox(Clij2DetectMinimaSliceBySliceBox) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DetectMinimaSliceBySliceBox

Creates a copy

Clij2DifferenceOfGaussian2d - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from DifferenceOfGaussian2D

Clij2DifferenceOfGaussian2d(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian2d

Creates a new instance

Clij2DifferenceOfGaussian2d(Clij2DifferenceOfGaussian2d) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian2d

Creates a copy

Clij2DifferenceOfGaussian3d - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from DifferenceOfGaussian3D

Clij2DifferenceOfGaussian3d(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian3d

Creates a new instance

Clij2DifferenceOfGaussian3d(Clij2DifferenceOfGaussian3d) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian3d

Creates a copy

Clij2DilateBox - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from DilateBox

Clij2DilateBox(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DilateBox

Creates a new instance

Clij2DilateBox(Clij2DilateBox) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DilateBox

Creates a copy

Clij2DilateBoxSliceBySlice - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from DilateBoxSliceBySlice

Clij2DilateBoxSliceBySlice(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DilateBoxSliceBySlice

Creates a new instance

Clij2DilateBoxSliceBySlice(Clij2DilateBoxSliceBySlice) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DilateBoxSliceBySlice

Creates a copy

Clij2DilateSphere - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from DilateSphere

Clij2DilateSphere(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DilateSphere

Creates a new instance

Clij2DilateSphere(Clij2DilateSphere) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DilateSphere

Creates a copy

Clij2DilateSphereSliceBySlice - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from DilateSphereSliceBySlice

Clij2DilateSphereSliceBySlice(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DilateSphereSliceBySlice

Creates a new instance

Clij2DilateSphereSliceBySlice(Clij2DilateSphereSliceBySlice) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DilateSphereSliceBySlice

Creates a copy

Clij2DistanceMap - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from DistanceMap

Clij2DistanceMap(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DistanceMap

Creates a new instance

Clij2DistanceMap(Clij2DistanceMap) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DistanceMap

Creates a copy

Clij2DivideImages - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from DivideImages

Clij2DivideImages(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DivideImages

Creates a new instance

Clij2DivideImages(Clij2DivideImages) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DivideImages

Creates a copy

Clij2DownsampleSliceBySliceHalfMedian - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from DownsampleSliceBySliceHalfMedian

Clij2DownsampleSliceBySliceHalfMedian(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DownsampleSliceBySliceHalfMedian

Creates a new instance

Clij2DownsampleSliceBySliceHalfMedian(Clij2DownsampleSliceBySliceHalfMedian) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DownsampleSliceBySliceHalfMedian

Creates a copy

Clij2EntropyBox - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from EntropyBox

Clij2EntropyBox(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2EntropyBox

Creates a new instance

Clij2EntropyBox(Clij2EntropyBox) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2EntropyBox

Creates a copy

Clij2Equal - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Equal

Clij2Equal(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Equal

Creates a new instance

Clij2Equal(Clij2Equal) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Equal

Creates a copy

Clij2EqualConstant - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from EqualConstant

Clij2EqualConstant(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2EqualConstant

Creates a new instance

Clij2EqualConstant(Clij2EqualConstant) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2EqualConstant

Creates a copy

Clij2EqualizeMeanIntensitiesOfSlices - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from EqualizeMeanIntensitiesOfSlices

Clij2EqualizeMeanIntensitiesOfSlices(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2EqualizeMeanIntensitiesOfSlices

Creates a new instance

Clij2EqualizeMeanIntensitiesOfSlices(Clij2EqualizeMeanIntensitiesOfSlices) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2EqualizeMeanIntensitiesOfSlices

Creates a copy

Clij2ErodeBox - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ErodeBox

Clij2ErodeBox(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ErodeBox

Creates a new instance

Clij2ErodeBox(Clij2ErodeBox) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ErodeBox

Creates a copy

Clij2ErodeBoxSliceBySlice - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ErodeBoxSliceBySlice

Clij2ErodeBoxSliceBySlice(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ErodeBoxSliceBySlice

Creates a new instance

Clij2ErodeBoxSliceBySlice(Clij2ErodeBoxSliceBySlice) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ErodeBoxSliceBySlice

Creates a copy

Clij2ErodeSphere - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ErodeSphere

Clij2ErodeSphere(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ErodeSphere

Creates a new instance

Clij2ErodeSphere(Clij2ErodeSphere) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ErodeSphere

Creates a copy

Clij2ErodeSphereSliceBySlice - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ErodeSphereSliceBySlice

Clij2ErodeSphereSliceBySlice(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ErodeSphereSliceBySlice

Creates a new instance

Clij2ErodeSphereSliceBySlice(Clij2ErodeSphereSliceBySlice) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ErodeSphereSliceBySlice

Creates a copy

Clij2ExcludeLabels - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ExcludeLabels

Clij2ExcludeLabels(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabels

Creates a new instance

Clij2ExcludeLabels(Clij2ExcludeLabels) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabels

Creates a copy

Clij2ExcludeLabelsOnEdges - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ExcludeLabelsOnEdges

Clij2ExcludeLabelsOnEdges(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsOnEdges

Creates a new instance

Clij2ExcludeLabelsOnEdges(Clij2ExcludeLabelsOnEdges) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsOnEdges

Creates a copy

Clij2ExcludeLabelsOnSurface - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ExcludeLabelsOnSurface

Clij2ExcludeLabelsOnSurface(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsOnSurface

Creates a new instance

Clij2ExcludeLabelsOnSurface(Clij2ExcludeLabelsOnSurface) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsOnSurface

Creates a copy

Clij2ExcludeLabelsSubSurface - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ExcludeLabelsSubSurface

Clij2ExcludeLabelsSubSurface(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsSubSurface

Creates a new instance

Clij2ExcludeLabelsSubSurface(Clij2ExcludeLabelsSubSurface) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsSubSurface

Creates a copy

Clij2ExcludeLabelsWithValuesOutOfRange - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ExcludeLabelsWithValuesOutOfRange

Clij2ExcludeLabelsWithValuesOutOfRange(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsWithValuesOutOfRange

Creates a new instance

Clij2ExcludeLabelsWithValuesOutOfRange(Clij2ExcludeLabelsWithValuesOutOfRange) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsWithValuesOutOfRange

Creates a copy

Clij2ExcludeLabelsWithValuesWithinRange - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ExcludeLabelsWithValuesWithinRange

Clij2ExcludeLabelsWithValuesWithinRange(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsWithValuesWithinRange

Creates a new instance

Clij2ExcludeLabelsWithValuesWithinRange(Clij2ExcludeLabelsWithValuesWithinRange) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsWithValuesWithinRange

Creates a copy

Clij2ExecuteKernelIterating - Class in org.hkijena.jipipe.extensions.clij2.algorithms

Clij2ExecuteKernelIterating(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelIterating

Clij2ExecuteKernelIterating(Clij2ExecuteKernelIterating) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelIterating

Clij2ExecuteKernelSimpleIterating - Class in org.hkijena.jipipe.extensions.clij2.algorithms

Clij2ExecuteKernelSimpleIterating(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelSimpleIterating

Clij2ExecuteKernelSimpleIterating(Clij2ExecuteKernelSimpleIterating) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelSimpleIterating

Clij2Exponential - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Exponential

Clij2Exponential(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Exponential

Creates a new instance

Clij2Exponential(Clij2Exponential) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Exponential

Creates a copy

Clij2ExtendLabelingViaVoronoi - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ExtendLabelingViaVoronoi

Clij2ExtendLabelingViaVoronoi(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExtendLabelingViaVoronoi

Creates a new instance

Clij2ExtendLabelingViaVoronoi(Clij2ExtendLabelingViaVoronoi) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExtendLabelingViaVoronoi

Creates a copy

Clij2FloodFillDiamond - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from FloodFillDiamond

Clij2FloodFillDiamond(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2FloodFillDiamond

Creates a new instance

Clij2FloodFillDiamond(Clij2FloodFillDiamond) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2FloodFillDiamond

Creates a copy

Clij2GaussianBlur2d - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from GaussianBlur2D

Clij2GaussianBlur2d(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GaussianBlur2d

Creates a new instance

Clij2GaussianBlur2d(Clij2GaussianBlur2d) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GaussianBlur2d

Creates a copy

Clij2GaussianBlur3d - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from GaussianBlur3D

Clij2GaussianBlur3d(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GaussianBlur3d

Creates a new instance

Clij2GaussianBlur3d(Clij2GaussianBlur3d) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GaussianBlur3d

Creates a copy

Clij2GenerateBinaryOverlapMatrix - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from GenerateBinaryOverlapMatrix

Clij2GenerateBinaryOverlapMatrix(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GenerateBinaryOverlapMatrix

Creates a new instance

Clij2GenerateBinaryOverlapMatrix(Clij2GenerateBinaryOverlapMatrix) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GenerateBinaryOverlapMatrix

Creates a copy

Clij2GenerateDistanceMatrix - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from GenerateDistanceMatrix

Clij2GenerateDistanceMatrix(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GenerateDistanceMatrix

Creates a new instance

Clij2GenerateDistanceMatrix(Clij2GenerateDistanceMatrix) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GenerateDistanceMatrix

Creates a copy

Clij2GenerateJaccardIndexMatrix - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from GenerateJaccardIndexMatrix

Clij2GenerateJaccardIndexMatrix(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GenerateJaccardIndexMatrix

Creates a new instance

Clij2GenerateJaccardIndexMatrix(Clij2GenerateJaccardIndexMatrix) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GenerateJaccardIndexMatrix

Creates a copy

Clij2GenerateParametricImage - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from GenerateParametricImage

Clij2GenerateParametricImage(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GenerateParametricImage

Creates a new instance

Clij2GenerateParametricImage(Clij2GenerateParametricImage) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GenerateParametricImage

Creates a copy

Clij2GenerateParametricImageFromResultsTableColumn - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from GenerateParametricImageFromResultsTableColumn

Clij2GenerateParametricImageFromResultsTableColumn(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GenerateParametricImageFromResultsTableColumn

Creates a new instance

Clij2GenerateParametricImageFromResultsTableColumn(Clij2GenerateParametricImageFromResultsTableColumn) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GenerateParametricImageFromResultsTableColumn

Creates a copy

Clij2GenerateTouchCountMatrix - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from GenerateTouchCountMatrix

Clij2GenerateTouchCountMatrix(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GenerateTouchCountMatrix

Creates a new instance

Clij2GenerateTouchCountMatrix(Clij2GenerateTouchCountMatrix) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GenerateTouchCountMatrix

Creates a copy

Clij2GenerateTouchMatrix - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from GenerateTouchMatrix

Clij2GenerateTouchMatrix(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GenerateTouchMatrix

Creates a new instance

Clij2GenerateTouchMatrix(Clij2GenerateTouchMatrix) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GenerateTouchMatrix

Creates a copy

Clij2GetJaccardIndex - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from GetJaccardIndex

Clij2GetJaccardIndex(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GetJaccardIndex

Creates a new instance

Clij2GetJaccardIndex(Clij2GetJaccardIndex) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GetJaccardIndex

Creates a copy

Clij2GetMeanSquaredError - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from GetMeanSquaredError

Clij2GetMeanSquaredError(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GetMeanSquaredError

Creates a new instance

Clij2GetMeanSquaredError(Clij2GetMeanSquaredError) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GetMeanSquaredError

Creates a copy

Clij2GetSorensenDiceCoefficient - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from GetSorensenDiceCoefficient

Clij2GetSorensenDiceCoefficient(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GetSorensenDiceCoefficient

Creates a new instance

Clij2GetSorensenDiceCoefficient(Clij2GetSorensenDiceCoefficient) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GetSorensenDiceCoefficient

Creates a copy

Clij2GradientX - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from GradientX

Clij2GradientX(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GradientX

Creates a new instance

Clij2GradientX(Clij2GradientX) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GradientX

Creates a copy

Clij2GradientY - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from GradientY

Clij2GradientY(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GradientY

Creates a new instance

Clij2GradientY(Clij2GradientY) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GradientY

Creates a copy

Clij2GradientZ - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from GradientZ

Clij2GradientZ(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GradientZ

Creates a new instance

Clij2GradientZ(Clij2GradientZ) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GradientZ

Creates a copy

Clij2Greater - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Greater

Clij2Greater(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Greater

Creates a new instance

Clij2Greater(Clij2Greater) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Greater

Creates a copy

Clij2GreaterConstant - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from GreaterConstant

Clij2GreaterConstant(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GreaterConstant

Creates a new instance

Clij2GreaterConstant(Clij2GreaterConstant) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GreaterConstant

Creates a copy

Clij2GreaterOrEqual - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from GreaterOrEqual

Clij2GreaterOrEqual(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GreaterOrEqual

Creates a new instance

Clij2GreaterOrEqual(Clij2GreaterOrEqual) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GreaterOrEqual

Creates a copy

Clij2GreaterOrEqualConstant - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from GreaterOrEqualConstant

Clij2GreaterOrEqualConstant(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GreaterOrEqualConstant

Creates a new instance

Clij2GreaterOrEqualConstant(Clij2GreaterOrEqualConstant) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GreaterOrEqualConstant

Creates a copy

Clij2Histogram - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Histogram

Clij2Histogram(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Histogram

Creates a new instance

Clij2Histogram(Clij2Histogram) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Histogram

Creates a copy

Clij2ImageToStack - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ImageToStack

Clij2ImageToStack(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ImageToStack

Creates a new instance

Clij2ImageToStack(Clij2ImageToStack) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ImageToStack

Creates a copy

Clij2Invert - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Invert

Clij2Invert(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Invert

Creates a new instance

Clij2Invert(Clij2Invert) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Invert

Creates a copy

Clij2JaccardIndex - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from JaccardIndex

Clij2JaccardIndex(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2JaccardIndex

Creates a new instance

Clij2JaccardIndex(Clij2JaccardIndex) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2JaccardIndex

Creates a copy

Clij2LabelCentroidsToPointList - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from LabelCentroidsToPointList

Clij2LabelCentroidsToPointList(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LabelCentroidsToPointList

Creates a new instance

Clij2LabelCentroidsToPointList(Clij2LabelCentroidsToPointList) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LabelCentroidsToPointList

Creates a copy

Clij2LabelledSpotsToPointList - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from LabelledSpotsToPointList

Clij2LabelledSpotsToPointList(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LabelledSpotsToPointList

Creates a new instance

Clij2LabelledSpotsToPointList(Clij2LabelledSpotsToPointList) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LabelledSpotsToPointList

Creates a copy

Clij2LabelSpots - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from LabelSpots

Clij2LabelSpots(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LabelSpots

Creates a new instance

Clij2LabelSpots(Clij2LabelSpots) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LabelSpots

Creates a copy

Clij2LabelToMask - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from LabelToMask

Clij2LabelToMask(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LabelToMask

Creates a new instance

Clij2LabelToMask(Clij2LabelToMask) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LabelToMask

Creates a copy

Clij2LabelVoronoiOctagon - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from LabelVoronoiOctagon

Clij2LabelVoronoiOctagon(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LabelVoronoiOctagon

Creates a new instance

Clij2LabelVoronoiOctagon(Clij2LabelVoronoiOctagon) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LabelVoronoiOctagon

Creates a copy

Clij2LaplaceBox - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from LaplaceBox

Clij2LaplaceBox(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LaplaceBox

Creates a new instance

Clij2LaplaceBox(Clij2LaplaceBox) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LaplaceBox

Creates a copy

Clij2LaplaceDiamond - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from LaplaceDiamond

Clij2LaplaceDiamond(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LaplaceDiamond

Creates a new instance

Clij2LaplaceDiamond(Clij2LaplaceDiamond) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LaplaceDiamond

Creates a copy

Clij2LocalThreshold - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from LocalThreshold

Clij2LocalThreshold(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LocalThreshold

Creates a new instance

Clij2LocalThreshold(Clij2LocalThreshold) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LocalThreshold

Creates a copy

Clij2Logarithm - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Logarithm

Clij2Logarithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Logarithm

Creates a new instance

Clij2Logarithm(Clij2Logarithm) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Logarithm

Creates a copy

Clij2Mask - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Mask

Clij2Mask(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mask

Creates a new instance

Clij2Mask(Clij2Mask) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mask

Creates a copy

Clij2MaskLabel - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MaskLabel

Clij2MaskLabel(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaskLabel

Creates a new instance

Clij2MaskLabel(Clij2MaskLabel) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaskLabel

Creates a copy

Clij2MaskStackWithPlane - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MaskStackWithPlane

Clij2MaskStackWithPlane(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaskStackWithPlane

Creates a new instance

Clij2MaskStackWithPlane(Clij2MaskStackWithPlane) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaskStackWithPlane

Creates a copy

Clij2Maximum2dBox - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Maximum2DBox

Clij2Maximum2dBox(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum2dBox

Creates a new instance

Clij2Maximum2dBox(Clij2Maximum2dBox) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum2dBox

Creates a copy

Clij2Maximum2dSphere - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Maximum2DSphere

Clij2Maximum2dSphere(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum2dSphere

Creates a new instance

Clij2Maximum2dSphere(Clij2Maximum2dSphere) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum2dSphere

Creates a copy

Clij2Maximum3dBox - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Maximum3DBox

Clij2Maximum3dBox(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum3dBox

Creates a new instance

Clij2Maximum3dBox(Clij2Maximum3dBox) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum3dBox

Creates a copy

Clij2Maximum3dSphere - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Maximum3DSphere

Clij2Maximum3dSphere(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum3dSphere

Creates a new instance

Clij2Maximum3dSphere(Clij2Maximum3dSphere) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum3dSphere

Creates a copy

Clij2MaximumImageAndScalar - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MaximumImageAndScalar

Clij2MaximumImageAndScalar(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumImageAndScalar

Creates a new instance

Clij2MaximumImageAndScalar(Clij2MaximumImageAndScalar) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumImageAndScalar

Creates a copy

Clij2MaximumImages - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MaximumImages

Clij2MaximumImages(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumImages

Creates a new instance

Clij2MaximumImages(Clij2MaximumImages) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumImages

Creates a copy

Clij2MaximumOctagon - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MaximumOctagon

Clij2MaximumOctagon(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumOctagon

Creates a new instance

Clij2MaximumOctagon(Clij2MaximumOctagon) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumOctagon

Creates a copy

Clij2MaximumOfMaskedPixels - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MaximumOfMaskedPixels

Clij2MaximumOfMaskedPixels(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumOfMaskedPixels

Creates a new instance

Clij2MaximumOfMaskedPixels(Clij2MaximumOfMaskedPixels) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumOfMaskedPixels

Creates a copy

Clij2MaximumOfTouchingNeighbors - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MaximumOfTouchingNeighbors

Clij2MaximumOfTouchingNeighbors(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumOfTouchingNeighbors

Creates a new instance

Clij2MaximumOfTouchingNeighbors(Clij2MaximumOfTouchingNeighbors) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumOfTouchingNeighbors

Creates a copy

Clij2MaximumSliceBySliceSphere - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MaximumSliceBySliceSphere

Clij2MaximumSliceBySliceSphere(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumSliceBySliceSphere

Creates a new instance

Clij2MaximumSliceBySliceSphere(Clij2MaximumSliceBySliceSphere) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumSliceBySliceSphere

Creates a copy

Clij2MaximumXProjection - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MaximumXProjection

Clij2MaximumXProjection(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumXProjection

Creates a new instance

Clij2MaximumXProjection(Clij2MaximumXProjection) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumXProjection

Creates a copy

Clij2MaximumYProjection - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MaximumYProjection

Clij2MaximumYProjection(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumYProjection

Creates a new instance

Clij2MaximumYProjection(Clij2MaximumYProjection) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumYProjection

Creates a copy

Clij2MaximumZProjection - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MaximumZProjection

Clij2MaximumZProjection(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumZProjection

Creates a new instance

Clij2MaximumZProjection(Clij2MaximumZProjection) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumZProjection

Creates a copy

Clij2MaximumZProjectionBounded - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MaximumZProjectionBounded

Clij2MaximumZProjectionBounded(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumZProjectionBounded

Creates a new instance

Clij2MaximumZProjectionBounded(Clij2MaximumZProjectionBounded) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumZProjectionBounded

Creates a copy

Clij2Mean2dBox - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Mean2DBox

Clij2Mean2dBox(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean2dBox

Creates a new instance

Clij2Mean2dBox(Clij2Mean2dBox) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean2dBox

Creates a copy

Clij2Mean2dSphere - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Mean2DSphere

Clij2Mean2dSphere(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean2dSphere

Creates a new instance

Clij2Mean2dSphere(Clij2Mean2dSphere) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean2dSphere

Creates a copy

Clij2Mean3dBox - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Mean3DBox

Clij2Mean3dBox(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean3dBox

Creates a new instance

Clij2Mean3dBox(Clij2Mean3dBox) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean3dBox

Creates a copy

Clij2Mean3dSphere - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Mean3DSphere

Clij2Mean3dSphere(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean3dSphere

Creates a new instance

Clij2Mean3dSphere(Clij2Mean3dSphere) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean3dSphere

Creates a copy

Clij2MeanClosestSpotDistance - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MeanClosestSpotDistance

Clij2MeanClosestSpotDistance(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanClosestSpotDistance

Creates a new instance

Clij2MeanClosestSpotDistance(Clij2MeanClosestSpotDistance) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanClosestSpotDistance

Creates a copy

Clij2MeanOfMaskedPixels - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MeanOfMaskedPixels

Clij2MeanOfMaskedPixels(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanOfMaskedPixels

Creates a new instance

Clij2MeanOfMaskedPixels(Clij2MeanOfMaskedPixels) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanOfMaskedPixels

Creates a copy

Clij2MeanOfTouchingNeighbors - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MeanOfTouchingNeighbors

Clij2MeanOfTouchingNeighbors(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanOfTouchingNeighbors

Creates a new instance

Clij2MeanOfTouchingNeighbors(Clij2MeanOfTouchingNeighbors) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanOfTouchingNeighbors

Creates a copy

Clij2MeanSliceBySliceSphere - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MeanSliceBySliceSphere

Clij2MeanSliceBySliceSphere(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanSliceBySliceSphere

Creates a new instance

Clij2MeanSliceBySliceSphere(Clij2MeanSliceBySliceSphere) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanSliceBySliceSphere

Creates a copy

Clij2MeanSquaredError - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MeanSquaredError

Clij2MeanSquaredError(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanSquaredError

Creates a new instance

Clij2MeanSquaredError(Clij2MeanSquaredError) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanSquaredError

Creates a copy

Clij2MeanXProjection - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MeanXProjection

Clij2MeanXProjection(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanXProjection

Creates a new instance

Clij2MeanXProjection(Clij2MeanXProjection) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanXProjection

Creates a copy

Clij2MeanYProjection - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MeanYProjection

Clij2MeanYProjection(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanYProjection

Creates a new instance

Clij2MeanYProjection(Clij2MeanYProjection) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanYProjection

Creates a copy

Clij2MeanZProjection - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MeanZProjection

Clij2MeanZProjection(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanZProjection

Creates a new instance

Clij2MeanZProjection(Clij2MeanZProjection) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanZProjection

Creates a copy

Clij2MeanZProjectionBounded - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MeanZProjectionBounded

Clij2MeanZProjectionBounded(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanZProjectionBounded

Creates a new instance

Clij2MeanZProjectionBounded(Clij2MeanZProjectionBounded) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanZProjectionBounded

Creates a copy

Clij2Median2dBox - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Median2DBox

Clij2Median2dBox(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median2dBox

Creates a new instance

Clij2Median2dBox(Clij2Median2dBox) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median2dBox

Creates a copy

Clij2Median2dSphere - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Median2DSphere

Clij2Median2dSphere(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median2dSphere

Creates a new instance

Clij2Median2dSphere(Clij2Median2dSphere) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median2dSphere

Creates a copy

Clij2Median3dBox - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Median3DBox

Clij2Median3dBox(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median3dBox

Creates a new instance

Clij2Median3dBox(Clij2Median3dBox) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median3dBox

Creates a copy

Clij2Median3dSphere - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Median3DSphere

Clij2Median3dSphere(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median3dSphere

Creates a new instance

Clij2Median3dSphere(Clij2Median3dSphere) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median3dSphere

Creates a copy

Clij2MedianOfTouchingNeighbors - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MedianOfTouchingNeighbors

Clij2MedianOfTouchingNeighbors(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MedianOfTouchingNeighbors

Creates a new instance

Clij2MedianOfTouchingNeighbors(Clij2MedianOfTouchingNeighbors) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MedianOfTouchingNeighbors

Creates a copy

Clij2MedianSliceBySliceBox - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MedianSliceBySliceBox

Clij2MedianSliceBySliceBox(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MedianSliceBySliceBox

Creates a new instance

Clij2MedianSliceBySliceBox(Clij2MedianSliceBySliceBox) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MedianSliceBySliceBox

Creates a copy

Clij2MedianSliceBySliceSphere - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MedianSliceBySliceSphere

Clij2MedianSliceBySliceSphere(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MedianSliceBySliceSphere

Creates a new instance

Clij2MedianSliceBySliceSphere(Clij2MedianSliceBySliceSphere) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MedianSliceBySliceSphere

Creates a copy

Clij2MedianZProjection - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MedianZProjection

Clij2MedianZProjection(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MedianZProjection

Creates a new instance

Clij2MedianZProjection(Clij2MedianZProjection) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MedianZProjection

Creates a copy

Clij2Minimum2dBox - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Minimum2DBox

Clij2Minimum2dBox(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum2dBox

Creates a new instance

Clij2Minimum2dBox(Clij2Minimum2dBox) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum2dBox

Creates a copy

Clij2Minimum2dSphere - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Minimum2DSphere

Clij2Minimum2dSphere(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum2dSphere

Creates a new instance

Clij2Minimum2dSphere(Clij2Minimum2dSphere) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum2dSphere

Creates a copy

Clij2Minimum3dBox - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Minimum3DBox

Clij2Minimum3dBox(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum3dBox

Creates a new instance

Clij2Minimum3dBox(Clij2Minimum3dBox) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum3dBox

Creates a copy

Clij2Minimum3dSphere - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Minimum3DSphere

Clij2Minimum3dSphere(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum3dSphere

Creates a new instance

Clij2Minimum3dSphere(Clij2Minimum3dSphere) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum3dSphere

Creates a copy

Clij2MinimumDistanceOfTouchingNeighbors - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MinimumDistanceOfTouchingNeighbors

Clij2MinimumDistanceOfTouchingNeighbors(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumDistanceOfTouchingNeighbors

Creates a new instance

Clij2MinimumDistanceOfTouchingNeighbors(Clij2MinimumDistanceOfTouchingNeighbors) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumDistanceOfTouchingNeighbors

Creates a copy

Clij2MinimumImageAndScalar - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MinimumImageAndScalar

Clij2MinimumImageAndScalar(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumImageAndScalar

Creates a new instance

Clij2MinimumImageAndScalar(Clij2MinimumImageAndScalar) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumImageAndScalar

Creates a copy

Clij2MinimumImages - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MinimumImages

Clij2MinimumImages(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumImages

Creates a new instance

Clij2MinimumImages(Clij2MinimumImages) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumImages

Creates a copy

Clij2MinimumOctagon - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MinimumOctagon

Clij2MinimumOctagon(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumOctagon

Creates a new instance

Clij2MinimumOctagon(Clij2MinimumOctagon) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumOctagon

Creates a copy

Clij2MinimumOfMaskedPixels - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MinimumOfMaskedPixels

Clij2MinimumOfMaskedPixels(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumOfMaskedPixels

Creates a new instance

Clij2MinimumOfMaskedPixels(Clij2MinimumOfMaskedPixels) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumOfMaskedPixels

Creates a copy

Clij2MinimumOfTouchingNeighbors - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MinimumOfTouchingNeighbors

Clij2MinimumOfTouchingNeighbors(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumOfTouchingNeighbors

Creates a new instance

Clij2MinimumOfTouchingNeighbors(Clij2MinimumOfTouchingNeighbors) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumOfTouchingNeighbors

Creates a copy

Clij2MinimumSliceBySliceSphere - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MinimumSliceBySliceSphere

Clij2MinimumSliceBySliceSphere(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumSliceBySliceSphere

Creates a new instance

Clij2MinimumSliceBySliceSphere(Clij2MinimumSliceBySliceSphere) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumSliceBySliceSphere

Creates a copy

Clij2MinimumXProjection - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MinimumXProjection

Clij2MinimumXProjection(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumXProjection

Creates a new instance

Clij2MinimumXProjection(Clij2MinimumXProjection) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumXProjection

Creates a copy

Clij2MinimumYProjection - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MinimumYProjection

Clij2MinimumYProjection(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumYProjection

Creates a new instance

Clij2MinimumYProjection(Clij2MinimumYProjection) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumYProjection

Creates a copy

Clij2MinimumZProjection - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MinimumZProjection

Clij2MinimumZProjection(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumZProjection

Creates a new instance

Clij2MinimumZProjection(Clij2MinimumZProjection) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumZProjection

Creates a copy

Clij2MinimumZProjectionBounded - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MinimumZProjectionBounded

Clij2MinimumZProjectionBounded(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumZProjectionBounded

Creates a new instance

Clij2MinimumZProjectionBounded(Clij2MinimumZProjectionBounded) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumZProjectionBounded

Creates a copy

Clij2MinimumZProjectionThresholdedBounded - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MinimumZProjectionThresholdedBounded

Clij2MinimumZProjectionThresholdedBounded(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumZProjectionThresholdedBounded

Creates a new instance

Clij2MinimumZProjectionThresholdedBounded(Clij2MinimumZProjectionThresholdedBounded) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumZProjectionThresholdedBounded

Creates a copy

Clij2MultiplyImageAndCoordinate - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MultiplyImageAndCoordinate

Clij2MultiplyImageAndCoordinate(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MultiplyImageAndCoordinate

Creates a new instance

Clij2MultiplyImageAndCoordinate(Clij2MultiplyImageAndCoordinate) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MultiplyImageAndCoordinate

Creates a copy

Clij2MultiplyImageAndScalar - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MultiplyImageAndScalar

Clij2MultiplyImageAndScalar(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MultiplyImageAndScalar

Creates a new instance

Clij2MultiplyImageAndScalar(Clij2MultiplyImageAndScalar) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MultiplyImageAndScalar

Creates a copy

Clij2MultiplyImages - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MultiplyImages

Clij2MultiplyImages(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MultiplyImages

Creates a new instance

Clij2MultiplyImages(Clij2MultiplyImages) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MultiplyImages

Creates a copy

Clij2MultiplyImageStackWithScalars - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MultiplyImageStackWithScalars

Clij2MultiplyImageStackWithScalars(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MultiplyImageStackWithScalars

Creates a new instance

Clij2MultiplyImageStackWithScalars(Clij2MultiplyImageStackWithScalars) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MultiplyImageStackWithScalars

Creates a copy

Clij2MultiplyMatrix - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MultiplyMatrix

Clij2MultiplyMatrix(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MultiplyMatrix

Creates a new instance

Clij2MultiplyMatrix(Clij2MultiplyMatrix) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MultiplyMatrix

Creates a copy

Clij2MultiplyStackWithPlane - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MultiplyStackWithPlane

Clij2MultiplyStackWithPlane(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MultiplyStackWithPlane

Creates a new instance

Clij2MultiplyStackWithPlane(Clij2MultiplyStackWithPlane) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MultiplyStackWithPlane

Creates a copy

Clij2NClosestDistances - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from NClosestDistances

Clij2NClosestDistances(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NClosestDistances

Creates a new instance

Clij2NClosestDistances(Clij2NClosestDistances) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NClosestDistances

Creates a copy

Clij2NClosestPoints - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from NClosestPoints

Clij2NClosestPoints(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NClosestPoints

Creates a new instance

Clij2NClosestPoints(Clij2NClosestPoints) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NClosestPoints

Creates a copy

Clij2NeighborsOfNeighbors - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from NeighborsOfNeighbors

Clij2NeighborsOfNeighbors(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NeighborsOfNeighbors

Creates a new instance

Clij2NeighborsOfNeighbors(Clij2NeighborsOfNeighbors) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NeighborsOfNeighbors

Creates a copy

Clij2NonzeroMaximumBox - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from NonzeroMaximumBox

Clij2NonzeroMaximumBox(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NonzeroMaximumBox

Creates a new instance

Clij2NonzeroMaximumBox(Clij2NonzeroMaximumBox) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NonzeroMaximumBox

Creates a copy

Clij2NonzeroMaximumDiamond - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from NonzeroMaximumDiamond

Clij2NonzeroMaximumDiamond(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NonzeroMaximumDiamond

Creates a new instance

Clij2NonzeroMaximumDiamond(Clij2NonzeroMaximumDiamond) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NonzeroMaximumDiamond

Creates a copy

Clij2NonzeroMinimumBox - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from NonzeroMinimumBox

Clij2NonzeroMinimumBox(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NonzeroMinimumBox

Creates a new instance

Clij2NonzeroMinimumBox(Clij2NonzeroMinimumBox) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NonzeroMinimumBox

Creates a copy

Clij2NonzeroMinimumDiamond - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from NonzeroMinimumDiamond

Clij2NonzeroMinimumDiamond(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NonzeroMinimumDiamond

Creates a new instance

Clij2NonzeroMinimumDiamond(Clij2NonzeroMinimumDiamond) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NonzeroMinimumDiamond

Creates a copy

Clij2NotEqual - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from NotEqual

Clij2NotEqual(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NotEqual

Creates a new instance

Clij2NotEqual(Clij2NotEqual) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NotEqual

Creates a copy

Clij2NotEqualConstant - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from NotEqualConstant

Clij2NotEqualConstant(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NotEqualConstant

Creates a new instance

Clij2NotEqualConstant(Clij2NotEqualConstant) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NotEqualConstant

Creates a copy

Clij2OnlyzeroOverwriteMaximumBox - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from OnlyzeroOverwriteMaximumBox

Clij2OnlyzeroOverwriteMaximumBox(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2OnlyzeroOverwriteMaximumBox

Creates a new instance

Clij2OnlyzeroOverwriteMaximumBox(Clij2OnlyzeroOverwriteMaximumBox) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2OnlyzeroOverwriteMaximumBox

Creates a copy

Clij2OnlyzeroOverwriteMaximumDiamond - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from OnlyzeroOverwriteMaximumDiamond

Clij2OnlyzeroOverwriteMaximumDiamond(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2OnlyzeroOverwriteMaximumDiamond

Creates a new instance

Clij2OnlyzeroOverwriteMaximumDiamond(Clij2OnlyzeroOverwriteMaximumDiamond) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2OnlyzeroOverwriteMaximumDiamond

Creates a copy

Clij2OpeningBox - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from OpeningBox

Clij2OpeningBox(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2OpeningBox

Creates a new instance

Clij2OpeningBox(Clij2OpeningBox) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2OpeningBox

Creates a copy

Clij2OpeningDiamond - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from OpeningDiamond

Clij2OpeningDiamond(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2OpeningDiamond

Creates a new instance

Clij2OpeningDiamond(Clij2OpeningDiamond) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2OpeningDiamond

Creates a copy

Clij2Paste2d - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Paste2D

Clij2Paste2d(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Paste2d

Creates a new instance

Clij2Paste2d(Clij2Paste2d) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Paste2d

Creates a copy

Clij2Paste3d - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Paste3D

Clij2Paste3d(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Paste3d

Creates a new instance

Clij2Paste3d(Clij2Paste3d) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Paste3d

Creates a copy

Clij2PointIndexListToMesh - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from PointIndexListToMesh

Clij2PointIndexListToMesh(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2PointIndexListToMesh

Creates a new instance

Clij2PointIndexListToMesh(Clij2PointIndexListToMesh) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2PointIndexListToMesh

Creates a copy

Clij2PointlistToLabelledSpots - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from PointlistToLabelledSpots

Clij2PointlistToLabelledSpots(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2PointlistToLabelledSpots

Creates a new instance

Clij2PointlistToLabelledSpots(Clij2PointlistToLabelledSpots) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2PointlistToLabelledSpots

Creates a copy

Clij2Power - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Power

Clij2Power(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Power

Creates a new instance

Clij2Power(Clij2Power) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Power

Creates a copy

Clij2PowerImages - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from PowerImages

Clij2PowerImages(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2PowerImages

Creates a new instance

Clij2PowerImages(Clij2PowerImages) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2PowerImages

Creates a copy

Clij2PullToResultsTable - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from PullToResultsTable

Clij2PullToResultsTable(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2PullToResultsTable

Creates a new instance

Clij2PullToResultsTable(Clij2PullToResultsTable) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2PullToResultsTable

Creates a copy

Clij2PushResultsTable - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from PushResultsTable

Clij2PushResultsTable(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2PushResultsTable

Creates a new instance

Clij2PushResultsTable(Clij2PushResultsTable) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2PushResultsTable

Creates a copy

Clij2ReduceStack - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ReduceStack

Clij2ReduceStack(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ReduceStack

Creates a new instance

Clij2ReduceStack(Clij2ReduceStack) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ReduceStack

Creates a copy

Clij2ReplaceIntensities - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ReplaceIntensities

Clij2ReplaceIntensities(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ReplaceIntensities

Creates a new instance

Clij2ReplaceIntensities(Clij2ReplaceIntensities) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ReplaceIntensities

Creates a copy

Clij2ReplaceIntensity - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ReplaceIntensity

Clij2ReplaceIntensity(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ReplaceIntensity

Creates a new instance

Clij2ReplaceIntensity(Clij2ReplaceIntensity) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ReplaceIntensity

Creates a copy

Clij2ReplacePixelsIfZero - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ReplacePixelsIfZero

Clij2ReplacePixelsIfZero(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ReplacePixelsIfZero

Creates a new instance

Clij2ReplacePixelsIfZero(Clij2ReplacePixelsIfZero) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ReplacePixelsIfZero

Creates a copy

Clij2ResliceBottom - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ResliceBottom

Clij2ResliceBottom(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceBottom

Creates a new instance

Clij2ResliceBottom(Clij2ResliceBottom) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceBottom

Creates a copy

Clij2ResliceLeft - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ResliceLeft

Clij2ResliceLeft(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceLeft

Creates a new instance

Clij2ResliceLeft(Clij2ResliceLeft) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceLeft

Creates a copy

Clij2ResliceRadial - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ResliceRadial

Clij2ResliceRadial(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceRadial

Creates a new instance

Clij2ResliceRadial(Clij2ResliceRadial) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceRadial

Creates a copy

Clij2ResliceRight - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ResliceRight

Clij2ResliceRight(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceRight

Creates a new instance

Clij2ResliceRight(Clij2ResliceRight) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceRight

Creates a copy

Clij2ResliceTop - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ResliceTop

Clij2ResliceTop(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceTop

Creates a new instance

Clij2ResliceTop(Clij2ResliceTop) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceTop

Creates a copy

Clij2RotateClockwise - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from RotateClockwise

Clij2RotateClockwise(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2RotateClockwise

Creates a new instance

Clij2RotateClockwise(Clij2RotateClockwise) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2RotateClockwise

Creates a copy

Clij2RotateCounterClockwise - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from RotateCounterClockwise

Clij2RotateCounterClockwise(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2RotateCounterClockwise

Creates a new instance

Clij2RotateCounterClockwise(Clij2RotateCounterClockwise) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2RotateCounterClockwise

Creates a copy

Clij2Scale2d - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Scale2D

Clij2Scale2d(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Scale2d

Creates a new instance

Clij2Scale2d(Clij2Scale2d) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Scale2d

Creates a copy

Clij2Scale3d - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Scale3D

Clij2Scale3d(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Scale3d

Creates a new instance

Clij2Scale3d(Clij2Scale3d) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Scale3d

Creates a copy

Clij2SetNonZeroPixelsToPixelIndex - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from SetNonZeroPixelsToPixelIndex

Clij2SetNonZeroPixelsToPixelIndex(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SetNonZeroPixelsToPixelIndex

Creates a new instance

Clij2SetNonZeroPixelsToPixelIndex(Clij2SetNonZeroPixelsToPixelIndex) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SetNonZeroPixelsToPixelIndex

Creates a copy

Clij2ShortestDistances - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ShortestDistances

Clij2ShortestDistances(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ShortestDistances

Creates a new instance

Clij2ShortestDistances(Clij2ShortestDistances) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ShortestDistances

Creates a copy

Clij2Smaller - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Smaller

Clij2Smaller(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Smaller

Creates a new instance

Clij2Smaller(Clij2Smaller) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Smaller

Creates a copy

Clij2SmallerConstant - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from SmallerConstant

Clij2SmallerConstant(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SmallerConstant

Creates a new instance

Clij2SmallerConstant(Clij2SmallerConstant) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SmallerConstant

Creates a copy

Clij2SmallerOrEqual - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from SmallerOrEqual

Clij2SmallerOrEqual(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SmallerOrEqual

Creates a new instance

Clij2SmallerOrEqual(Clij2SmallerOrEqual) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SmallerOrEqual

Creates a copy

Clij2SmallerOrEqualConstant - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from SmallerOrEqualConstant

Clij2SmallerOrEqualConstant(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SmallerOrEqualConstant

Creates a new instance

Clij2SmallerOrEqualConstant(Clij2SmallerOrEqualConstant) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SmallerOrEqualConstant

Creates a copy

Clij2Sobel - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Sobel

Clij2Sobel(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Sobel

Creates a new instance

Clij2Sobel(Clij2Sobel) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Sobel

Creates a copy

Clij2SorensenDiceCoefficient - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from SorensenDiceCoefficient

Clij2SorensenDiceCoefficient(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SorensenDiceCoefficient

Creates a new instance

Clij2SorensenDiceCoefficient(Clij2SorensenDiceCoefficient) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SorensenDiceCoefficient

Creates a copy

Clij2SpotsToPointList1 - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from SpotsToPointList

Clij2SpotsToPointList1(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SpotsToPointList1

Creates a new instance

Clij2SpotsToPointList1(Clij2SpotsToPointList1) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SpotsToPointList1

Creates a copy

Clij2SquaredDifference - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from SquaredDifference

Clij2SquaredDifference(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SquaredDifference

Creates a new instance

Clij2SquaredDifference(Clij2SquaredDifference) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SquaredDifference

Creates a copy

Clij2StandardDeviationOfMaskedPixels - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from StandardDeviationOfMaskedPixels

Clij2StandardDeviationOfMaskedPixels(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2StandardDeviationOfMaskedPixels

Creates a new instance

Clij2StandardDeviationOfMaskedPixels(Clij2StandardDeviationOfMaskedPixels) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2StandardDeviationOfMaskedPixels

Creates a copy

Clij2StandardDeviationOfTouchingNeighbors - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from StandardDeviationOfTouchingNeighbors

Clij2StandardDeviationOfTouchingNeighbors(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2StandardDeviationOfTouchingNeighbors

Creates a new instance

Clij2StandardDeviationOfTouchingNeighbors(Clij2StandardDeviationOfTouchingNeighbors) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2StandardDeviationOfTouchingNeighbors

Creates a copy

Clij2StandardDeviationZProjection - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from StandardDeviationZProjection

Clij2StandardDeviationZProjection(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2StandardDeviationZProjection

Creates a new instance

Clij2StandardDeviationZProjection(Clij2StandardDeviationZProjection) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2StandardDeviationZProjection

Creates a copy

Clij2StatisticsOfBackgroundAndLabelledPixels - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from StatisticsOfBackgroundAndLabelledPixels

Clij2StatisticsOfBackgroundAndLabelledPixels(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2StatisticsOfBackgroundAndLabelledPixels

Creates a new instance

Clij2StatisticsOfBackgroundAndLabelledPixels(Clij2StatisticsOfBackgroundAndLabelledPixels) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2StatisticsOfBackgroundAndLabelledPixels

Creates a copy

Clij2StatisticsOfImage - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from StatisticsOfImage

Clij2StatisticsOfImage(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2StatisticsOfImage

Creates a new instance

Clij2StatisticsOfImage(Clij2StatisticsOfImage) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2StatisticsOfImage

Creates a copy

Clij2StatisticsOfLabelledPixels - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from StatisticsOfLabelledPixels

Clij2StatisticsOfLabelledPixels(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2StatisticsOfLabelledPixels

Creates a new instance

Clij2StatisticsOfLabelledPixels(Clij2StatisticsOfLabelledPixels) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2StatisticsOfLabelledPixels

Creates a copy

Clij2SubtractImageFromScalar - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from SubtractImageFromScalar

Clij2SubtractImageFromScalar(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SubtractImageFromScalar

Creates a new instance

Clij2SubtractImageFromScalar(Clij2SubtractImageFromScalar) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SubtractImageFromScalar

Creates a copy

Clij2SubtractImages - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from SubtractImages

Clij2SubtractImages(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SubtractImages

Creates a new instance

Clij2SubtractImages(Clij2SubtractImages) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SubtractImages

Creates a copy

Clij2SumImageSliceBySlice - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from SumImageSliceBySlice

Clij2SumImageSliceBySlice(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SumImageSliceBySlice

Creates a new instance

Clij2SumImageSliceBySlice(Clij2SumImageSliceBySlice) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SumImageSliceBySlice

Creates a copy

Clij2SumXProjection - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from SumXProjection

Clij2SumXProjection(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SumXProjection

Creates a new instance

Clij2SumXProjection(Clij2SumXProjection) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SumXProjection

Creates a copy

Clij2SumYProjection - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from SumYProjection

Clij2SumYProjection(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SumYProjection

Creates a new instance

Clij2SumYProjection(Clij2SumYProjection) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SumYProjection

Creates a copy

Clij2SumZProjection - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from SumZProjection

Clij2SumZProjection(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SumZProjection

Creates a new instance

Clij2SumZProjection(Clij2SumZProjection) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SumZProjection

Creates a copy

Clij2Threshold - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Threshold

Clij2Threshold(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Threshold

Creates a new instance

Clij2Threshold(Clij2Threshold) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Threshold

Creates a copy

Clij2ThresholdDefault - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ThresholdDefault

Clij2ThresholdDefault(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdDefault

Creates a new instance

Clij2ThresholdDefault(Clij2ThresholdDefault) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdDefault

Creates a copy

Clij2ThresholdHuang - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ThresholdHuang

Clij2ThresholdHuang(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdHuang

Creates a new instance

Clij2ThresholdHuang(Clij2ThresholdHuang) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdHuang

Creates a copy

Clij2ThresholdIjIsoData - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ThresholdIJ_IsoData

Clij2ThresholdIjIsoData(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdIjIsoData

Creates a new instance

Clij2ThresholdIjIsoData(Clij2ThresholdIjIsoData) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdIjIsoData

Creates a copy

Clij2ThresholdIntermodes - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ThresholdIntermodes

Clij2ThresholdIntermodes(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdIntermodes

Creates a new instance

Clij2ThresholdIntermodes(Clij2ThresholdIntermodes) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdIntermodes

Creates a copy

Clij2ThresholdIsoData - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ThresholdIsoData

Clij2ThresholdIsoData(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdIsoData

Creates a new instance

Clij2ThresholdIsoData(Clij2ThresholdIsoData) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdIsoData

Creates a copy

Clij2ThresholdLi - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ThresholdLi

Clij2ThresholdLi(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdLi

Creates a new instance

Clij2ThresholdLi(Clij2ThresholdLi) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdLi

Creates a copy

Clij2ThresholdMaxEntropy - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ThresholdMaxEntropy

Clij2ThresholdMaxEntropy(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdMaxEntropy

Creates a new instance

Clij2ThresholdMaxEntropy(Clij2ThresholdMaxEntropy) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdMaxEntropy

Creates a copy

Clij2ThresholdMean - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ThresholdMean

Clij2ThresholdMean(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdMean

Creates a new instance

Clij2ThresholdMean(Clij2ThresholdMean) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdMean

Creates a copy

Clij2ThresholdMinError - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ThresholdMinError

Clij2ThresholdMinError(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdMinError

Creates a new instance

Clij2ThresholdMinError(Clij2ThresholdMinError) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdMinError

Creates a copy

Clij2ThresholdMinimum - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ThresholdMinimum

Clij2ThresholdMinimum(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdMinimum

Creates a new instance

Clij2ThresholdMinimum(Clij2ThresholdMinimum) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdMinimum

Creates a copy

Clij2ThresholdMoments - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ThresholdMoments

Clij2ThresholdMoments(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdMoments

Creates a new instance

Clij2ThresholdMoments(Clij2ThresholdMoments) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdMoments

Creates a copy

Clij2ThresholdOtsu - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ThresholdOtsu

Clij2ThresholdOtsu(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdOtsu

Creates a new instance

Clij2ThresholdOtsu(Clij2ThresholdOtsu) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdOtsu

Creates a copy

Clij2ThresholdPercentile - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ThresholdPercentile

Clij2ThresholdPercentile(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdPercentile

Creates a new instance

Clij2ThresholdPercentile(Clij2ThresholdPercentile) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdPercentile

Creates a copy

Clij2ThresholdRenyiEntropy - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ThresholdRenyiEntropy

Clij2ThresholdRenyiEntropy(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdRenyiEntropy

Creates a new instance

Clij2ThresholdRenyiEntropy(Clij2ThresholdRenyiEntropy) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdRenyiEntropy

Creates a copy

Clij2ThresholdShanbhag - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ThresholdShanbhag

Clij2ThresholdShanbhag(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdShanbhag

Creates a new instance

Clij2ThresholdShanbhag(Clij2ThresholdShanbhag) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdShanbhag

Creates a copy

Clij2ThresholdTriangle - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ThresholdTriangle

Clij2ThresholdTriangle(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdTriangle

Creates a new instance

Clij2ThresholdTriangle(Clij2ThresholdTriangle) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdTriangle

Creates a copy

Clij2ThresholdYen - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ThresholdYen

Clij2ThresholdYen(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdYen

Creates a new instance

Clij2ThresholdYen(Clij2ThresholdYen) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdYen

Creates a copy

Clij2TopHatBox - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from TopHatBox

Clij2TopHatBox(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TopHatBox

Creates a new instance

Clij2TopHatBox(Clij2TopHatBox) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TopHatBox

Creates a copy

Clij2TopHatSphere - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from TopHatSphere

Clij2TopHatSphere(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TopHatSphere

Creates a new instance

Clij2TopHatSphere(Clij2TopHatSphere) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TopHatSphere

Creates a copy

Clij2TouchMatrixToAdjacencyMatrix - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from TouchMatrixToAdjacencyMatrix

Clij2TouchMatrixToAdjacencyMatrix(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TouchMatrixToAdjacencyMatrix

Creates a new instance

Clij2TouchMatrixToAdjacencyMatrix(Clij2TouchMatrixToAdjacencyMatrix) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TouchMatrixToAdjacencyMatrix

Creates a copy

Clij2TouchMatrixToMesh - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from TouchMatrixToMesh

Clij2TouchMatrixToMesh(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TouchMatrixToMesh

Creates a new instance

Clij2TouchMatrixToMesh(Clij2TouchMatrixToMesh) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TouchMatrixToMesh

Creates a copy

Clij2Translate2d - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Translate2D

Clij2Translate2d(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Translate2d

Creates a new instance

Clij2Translate2d(Clij2Translate2d) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Translate2d

Creates a copy

Clij2Translate3d - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Translate3D

Clij2Translate3d(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Translate3d

Creates a new instance

Clij2Translate3d(Clij2Translate3d) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Translate3d

Creates a copy

Clij2TransposeXy - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from TransposeXY

Clij2TransposeXy(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TransposeXy

Creates a new instance

Clij2TransposeXy(Clij2TransposeXy) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TransposeXy

Creates a copy

Clij2TransposeXz - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from TransposeXZ

Clij2TransposeXz(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TransposeXz

Creates a new instance

Clij2TransposeXz(Clij2TransposeXz) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TransposeXz

Creates a copy

Clij2TransposeYz - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from TransposeYZ

Clij2TransposeYz(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TransposeYz

Creates a new instance

Clij2TransposeYz(Clij2TransposeYz) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TransposeYz

Creates a copy

Clij2UndefinedToZero - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from UndefinedToZero

Clij2UndefinedToZero(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2UndefinedToZero

Creates a new instance

Clij2UndefinedToZero(Clij2UndefinedToZero) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2UndefinedToZero

Creates a copy

Clij2VarianceOfMaskedPixels - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from VarianceOfMaskedPixels

Clij2VarianceOfMaskedPixels(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2VarianceOfMaskedPixels

Creates a new instance

Clij2VarianceOfMaskedPixels(Clij2VarianceOfMaskedPixels) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2VarianceOfMaskedPixels

Creates a copy

Clij2VoronoiLabeling - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from VoronoiLabeling

Clij2VoronoiLabeling(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2VoronoiLabeling

Creates a new instance

Clij2VoronoiLabeling(Clij2VoronoiLabeling) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2VoronoiLabeling

Creates a copy

Clij2VoronoiOctagon - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from VoronoiOctagon

Clij2VoronoiOctagon(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2VoronoiOctagon

Creates a new instance

Clij2VoronoiOctagon(Clij2VoronoiOctagon) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2VoronoiOctagon

Creates a copy

Clij2Watershed - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Watershed

Clij2Watershed(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Watershed

Creates a new instance

Clij2Watershed(Clij2Watershed) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Watershed

Creates a copy

Clij2WriteValuesToPositions - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from WriteValuesToPositions

Clij2WriteValuesToPositions(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2WriteValuesToPositions

Creates a new instance

Clij2WriteValuesToPositions(Clij2WriteValuesToPositions) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2WriteValuesToPositions

Creates a copy

CLIJControlPanel - Class in org.hkijena.jipipe.extensions.clij2.ui

Graphical control panel for CLIJ

CLIJControlPanel(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.extensions.clij2.ui.CLIJControlPanel

CLIJControlPanelMenuExtension - Class in org.hkijena.jipipe.extensions.clij2.ui

Adds a menu item that allows to control CLIJ

CLIJControlPanelMenuExtension(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.extensions.clij2.ui.CLIJControlPanelMenuExtension

Creates a new instance

CLIJExtension - Class in org.hkijena.jipipe.extensions.clij2

Integrates CLIJ

CLIJExtension() - Constructor for class org.hkijena.jipipe.extensions.clij2.CLIJExtension

CLIJImageData - Class in org.hkijena.jipipe.extensions.clij2.datatypes

Contains a CLIJ image

CLIJImageData(ClearCLBuffer) - Constructor for class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageData

Initializes a new instance from an existing buffer

CLIJImageData(ImagePlusData) - Constructor for class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageData

Initializes an instance by copying data from ImagePlusData

CLIJImageData(CLIJImageData) - Constructor for class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageData

Makes a copy

CLIJImageDataImageJAdapter - Class in org.hkijena.jipipe.extensions.clij2.datatypes

Adapter for CLIJImageData

CLIJImageDataImageJAdapter() - Constructor for class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageDataImageJAdapter

CLIJImageToImagePlusDataConverter - Class in org.hkijena.jipipe.extensions.clij2.datatypes

Converter from CLIJImageData to ImagePlusData

CLIJImageToImagePlusDataConverter(Class<? extends JIPipeData>) - Constructor for class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageToImagePlusDataConverter

CLIJSettings - Class in org.hkijena.jipipe.extensions.clij2

Settings for CLIJ

CLIJSettings() - Constructor for class org.hkijena.jipipe.extensions.clij2.CLIJSettings

clone(JIPipeGraphNode) - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

clone(JIPipeGraphNode) - Method in class org.hkijena.jipipe.api.nodes.JIPipeEmptyNodeInfo

clone(JIPipeGraphNode) - Method in class org.hkijena.jipipe.api.nodes.JIPipeJavaNodeInfo

clone(JIPipeGraphNode) - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeInfo

Copies an existing algorithm instance

clone(JIPipeGraphNode) - Method in class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterNodeInfo

cloneTableModel(DefaultTableModel) - Static method in class org.hkijena.jipipe.utils.TableUtils

Copies a table

close() - Method in class org.hkijena.jipipe.utils.BusyCursor

closeAllTabs() - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane

Closes all tabs

closeMessage() - Method in class org.hkijena.jipipe.ui.components.MessagePanel.Message

closeTab(DocumentTabPane.DocumentTab) - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane

Closes the tab.

collapse(IOInterfaceAlgorithm) - Static method in class org.hkijena.jipipe.api.compartments.algorithms.IOInterfaceAlgorithm

Removes the interface and directly connects the inputs and outputs

CollapseIOInterfaceNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu

CollapseIOInterfaceNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.CollapseIOInterfaceNodeUIContextAction

ColorDeserializer - Class in org.hkijena.jipipe.extensions.parameters.colors

Deserializer for Color

ColorDeserializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.colors.ColorDeserializer

ColorIcon - Class in org.hkijena.jipipe.ui.components

Icon that is only one specific color, including border

ColorIcon() - Constructor for class org.hkijena.jipipe.ui.components.ColorIcon

Creates a 16x16 black icon

ColorIcon(int, int) - Constructor for class org.hkijena.jipipe.ui.components.ColorIcon

Creates a black icon

ColorIcon(int, int, Color) - Constructor for class org.hkijena.jipipe.ui.components.ColorIcon

Creates an icon with black borders

ColorIcon(int, int, Color, Color) - Constructor for class org.hkijena.jipipe.ui.components.ColorIcon

ColorMap - Enum in org.hkijena.jipipe.extensions.parameters.colors

All available color maps

ColorMapEnumItemInfo - Class in org.hkijena.jipipe.extensions.parameters.colors

EnumItemInfo implementation for ColorMap

ColorMapEnumItemInfo() - Constructor for class org.hkijena.jipipe.extensions.parameters.colors.ColorMapEnumItemInfo

Creates a new instance

ColorMapIcon - Class in org.hkijena.jipipe.extensions.parameters.colors

Icon that renders a color map entry

ColorMapIcon() - Constructor for class org.hkijena.jipipe.extensions.parameters.colors.ColorMapIcon

Creates a 16x16 black icon

ColorMapIcon(int, int) - Constructor for class org.hkijena.jipipe.extensions.parameters.colors.ColorMapIcon

Creates a viridis icon

ColorMapIcon(int, int, ColorMap) - Constructor for class org.hkijena.jipipe.extensions.parameters.colors.ColorMapIcon

ColorParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.colors

Parameter editor for String

ColorParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.colors.ColorParameterEditorUI

ColorRoiByStatisticsAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

Wrapper around RoiManager

ColorRoiByStatisticsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ColorRoiByStatisticsAlgorithm

Instantiates a new node type.

ColorRoiByStatisticsAlgorithm(ColorRoiByStatisticsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ColorRoiByStatisticsAlgorithm

Instantiates a new node type.

ColorSerializer - Class in org.hkijena.jipipe.extensions.parameters.colors

Serializer for Color

ColorSerializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.colors.ColorSerializer

colorToHexString(Color) - Static method in class org.hkijena.jipipe.utils.StringUtils

Converts a color to a Hex string

column - Variable in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData.Index

ColumnContentType - Enum in org.hkijena.jipipe.extensions.tables

Available column content types

ColumnOperation - Interface in org.hkijena.jipipe.extensions.tables

An operation on a TableColumn

ColumnOperationEntry(String, ColumnOperation, String, String, String) - Constructor for class org.hkijena.jipipe.api.registries.JIPipeTableRegistry.ColumnOperationEntry

Creates a new entry

comparePlugins(PluginInfo<?>, PluginInfo<?>) - Static method in class org.hkijena.jipipe.JIPipeDefaultRegistry

Compares two plugins and sorts them by priority

comparePriority(JIPipeParameterAccess, JIPipeParameterAccess) - Static method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterAccess

Compares the priority

compareTo(JIPipeAnnotation) - Method in class org.hkijena.jipipe.api.data.JIPipeAnnotation

compareTo(JIPipeDataInfo) - Method in class org.hkijena.jipipe.api.data.JIPipeDataInfo

compareTo(JIPipeProjectCache.State) - Method in class org.hkijena.jipipe.api.JIPipeProjectCache.State

compareTo(JIPipeParameterTypeInfo) - Method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterTypeInfo

compareTo(RankedData<T>) - Method in class org.hkijena.jipipe.utils.RankedData

COMPARTMENT_DEFAULT - Static variable in class org.hkijena.jipipe.api.nodes.JIPipeGraph

CompartmentAddedEvent - Class in org.hkijena.jipipe.api.events

Triggered when a sample is added to an JIPipeProject

CompartmentAddedEvent(JIPipeProjectCompartment) - Constructor for class org.hkijena.jipipe.api.events.CompartmentAddedEvent

CompartmentNodeTypeCategory - Class in org.hkijena.jipipe.api.compartments.algorithms

CompartmentNodeTypeCategory() - Constructor for class org.hkijena.jipipe.api.compartments.algorithms.CompartmentNodeTypeCategory

CompartmentRemovedEvent - Class in org.hkijena.jipipe.api.events

Triggered when a sample is removed from an JIPipeProject

CompartmentRemovedEvent(JIPipeProjectCompartment) - Constructor for class org.hkijena.jipipe.api.events.CompartmentRemovedEvent

CompartmentRenamedEvent - Class in org.hkijena.jipipe.api.events

Triggered when a sample in an JIPipeProject is renamed

CompartmentRenamedEvent(JIPipeProjectCompartment) - Constructor for class org.hkijena.jipipe.api.events.CompartmentRenamedEvent

composeInheritanceConversions(Map<JIPipeDataInfo, JIPipeDataInfo>, Map<JIPipeDataInfo, JIPipeDataInfo>) - Static method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo

Creates the composition of two inheritance conversions.

composeRawInheritanceConversions(Map<Class<? extends JIPipeData>, Class<? extends JIPipeData>>, Map<Class<? extends JIPipeData>, Class<? extends JIPipeData>>) - Static method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo

Creates the composition of two inheritance conversions.

CompoundGraphHistorySnapshot - Class in org.hkijena.jipipe.api.history

CompoundGraphHistorySnapshot(List<JIPipeAlgorithmGraphHistorySnapshot>) - Constructor for class org.hkijena.jipipe.api.history.CompoundGraphHistorySnapshot

ConcatenateByParameter - Class in org.hkijena.jipipe.extensions.filesystem.algorithms

Applies subfolder navigation to each input folder

ConcatenateByParameter(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ConcatenateByParameter

ConcatenateByParameter(ConcatenateByParameter) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ConcatenateByParameter

Copies the algorithm

ConcatenatePaths - Class in org.hkijena.jipipe.extensions.filesystem.algorithms

Applies subfolder navigation to each input folder

ConcatenatePaths(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ConcatenatePaths

ConcatenatePaths(ConcatenatePaths) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ConcatenatePaths

Copies the algorithm

ConfirmingButton - Class in org.hkijena.jipipe.ui.components

Button that shows a nice confirmation of some action taken

ConfirmingButton() - Constructor for class org.hkijena.jipipe.ui.components.ConfirmingButton

Creates a button

ConfirmingButton(Icon) - Constructor for class org.hkijena.jipipe.ui.components.ConfirmingButton

ConfirmingButton(String) - Constructor for class org.hkijena.jipipe.ui.components.ConfirmingButton

ConfirmingButton(Action) - Constructor for class org.hkijena.jipipe.ui.components.ConfirmingButton

ConfirmingButton(String, Icon) - Constructor for class org.hkijena.jipipe.ui.components.ConfirmingButton

ConflictDialog - Class in org.hkijena.jipipe.ui.ijupdater

Copy of ConflictDialog because the original one expects an UpdaterFrame

ConflictDialog(Window, String) - Constructor for class org.hkijena.jipipe.ui.ijupdater.ConflictDialog

conflictList - Variable in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog

conflicts - Variable in class org.hkijena.jipipe.ui.ijupdater.ResolveDependencies

connect(JIPipeDataSlot, JIPipeDataSlot) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Connects an output slot to an input slot.

connect(JIPipeDataSlot, JIPipeDataSlot, boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Connects an output slot to an input slot.

connectCompartments(JIPipeProjectCompartment, JIPipeProjectCompartment) - Method in class org.hkijena.jipipe.api.JIPipeProject

Connects two compartments

connectSlot(JIPipeDataSlot, JIPipeDataSlot) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeDataSlotUI

Connects the two slots

containsColumn(String) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Returns true if the column exists

containsEquivalentOf(JIPipeGraphNode, JIPipeGraph) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Returns true if this graph contains an algorithm with the same ID as the foreign algorithm in the foreign graph

containsKey(String) - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection

Returns true if there is a parameter with given key

containsNode(JIPipeGraphNode) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Returns true if this graph contains the algorithm

containsNode(JIPipeDataSlot) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Returns true if the slot is in this graph

containsOnlyRoisOfType(int) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData

Returns if this ROI list only contains ROI of given type

context() - Method in class org.hkijena.jipipe.ui.components.SplashScreen

context() - Method in class org.hkijena.jipipe.ui.parameters.JIPipeParameterEditorUI

context() - Method in class org.hkijena.jipipe.ui.parameters.ParameterPanel

ContextAction(Object, Method, URL, JIPipeDocumentation) - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.ContextAction

CONTROL_TEXT_COLOR - Static variable in class org.hkijena.jipipe.utils.ModernMetalTheme

convert(JIPipeData) - Method in interface org.hkijena.jipipe.api.data.JIPipeDataConverter

Converts the supported input type to the output type

convert(JIPipeData, Class<? extends JIPipeData>) - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry

Converts the input data to the output data type

convert(JIPipeData) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.ImplicitResultsTableDataConverter

convert(JIPipeData) - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageToImagePlusDataConverter

convert(JIPipeData) - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.ImagePlusDataToCLIJImageDataConverter

convert(JIPipeData) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ImplicitPathTypeConverter

convert(JIPipeData) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePlusToOMEImageTypeConverter

convert(JIPipeData) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImplicitImageTypeConverter

convert(JIPipeData) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.OMEImageToImagePlusTypeConverter

convert(JIPipeData) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.OmeImageToOMEXMLTypeConverter

convert(JIPipeData) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.OMEImageToROITypeConverter

convert(JIPipeData) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.PlotToImageTypeConverter

convert(JIPipeData) - Method in class org.hkijena.jipipe.extensions.strings.StringDataConverter

convert(JIPipeData) - Method in class org.hkijena.jipipe.extensions.tables.DoubleArrayColumnToTableConverter

convert(JIPipeData) - Method in class org.hkijena.jipipe.extensions.tables.StringArrayColumnToTableConverter

ConvertAnnotationTableToAnnotatedTables - Class in org.hkijena.jipipe.extensions.tables.algorithms

Algorithm that integrates columns

ConvertAnnotationTableToAnnotatedTables(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.ConvertAnnotationTableToAnnotatedTables

Creates a new instance

ConvertAnnotationTableToAnnotatedTables(ConvertAnnotationTableToAnnotatedTables) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.ConvertAnnotationTableToAnnotatedTables

Creates a copy

ConvertColumnsAlgorithm - Class in org.hkijena.jipipe.extensions.tables.algorithms

Algorithm that integrates columns

ConvertColumnsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.ConvertColumnsAlgorithm

Creates a new instance

ConvertColumnsAlgorithm(ConvertColumnsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.ConvertColumnsAlgorithm

Creates a copy

ConvertDataToOutputPath - Class in org.hkijena.jipipe.extensions.filesystem.algorithms

Applies subfolder navigation to each input folder

ConvertDataToOutputPath(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ConvertDataToOutputPath

ConvertDataToOutputPath(ConvertDataToOutputPath) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ConvertDataToOutputPath

Copies the algorithm

ConverterAlgorithm - Class in org.hkijena.jipipe.extensions.utils.algorithms

Algorithm that converts any type to any other type

ConverterAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.utils.algorithms.ConverterAlgorithm

ConverterAlgorithm(JIPipeSimpleIteratingAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.utils.algorithms.ConverterAlgorithm

convertIfNeeded(ImagePlus) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.color.ImagePlusColor8UData

Converts an ImagePlus to the color space of this data.

convertIfNeeded(ImagePlus) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.color.ImagePlusColorData

Converts an ImagePlus to the color space of this data.

convertIfNeeded(ImagePlus) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.color.ImagePlusColorRGBData

Converts an ImagePlus to the color space of this data.

convertIfNeeded(ImagePlus) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale.ImagePlusGreyscale16UData

Converts an ImagePlus to the color space of this data.

convertIfNeeded(ImagePlus) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale.ImagePlusGreyscale32FData

Converts an ImagePlus to the color space of this data.

convertIfNeeded(ImagePlus) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale.ImagePlusGreyscale8UData

Converts an ImagePlus to the color space of this data.

convertIfNeeded(ImagePlus) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale.ImagePlusGreyscaleData

Converts an ImagePlus to the color space of this data.

convertImageJToJIPipe(Object) - Method in interface org.hkijena.jipipe.api.compat.ImageJDatatypeAdapter

Converts an ImageJ data type to its corresponding JIPipe type

convertImageJToJIPipe(Object) - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageDataImageJAdapter

convertImageJToJIPipe(Object) - Method in class org.hkijena.jipipe.extensions.filesystem.compat.PathDataImageJAdapter

convertImageJToJIPipe(Object) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ImgPlusDataImageJAdapter

Converts ImagePlus to an ImagePlusData instance.

convertImageJToJIPipe(Object) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.OMEImageDataImageJAdapter

Converts ImagePlus to an ImagePlusData instance.

convertImageJToJIPipe(Object) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ResultsTableDataImageJAdapter

Converts ResultsTable to ResultsTableData.

convertImageJToJIPipe(Object) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ROIDataImageJAdapter

Converts a RoiManager to ROIListData.

ConvertingColumnOperation - Interface in org.hkijena.jipipe.extensions.tables

A column operation that returns an output that has the same size as the input

ConvertingTableColumnProcessorParameter - Class in org.hkijena.jipipe.extensions.tables.parameters.processors

A parameter that models processing an input column via an conversion function and generating an output column

ConvertingTableColumnProcessorParameter() - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.processors.ConvertingTableColumnProcessorParameter

ConvertingTableColumnProcessorParameter(ConvertingTableColumnProcessorParameter) - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.processors.ConvertingTableColumnProcessorParameter

ConvertingTableColumnProcessorParameterList - Class in org.hkijena.jipipe.extensions.tables.parameters.collections

ConvertingTableColumnProcessorParameterList() - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.collections.ConvertingTableColumnProcessorParameterList

Creates a new instance

ConvertingTableColumnProcessorParameterList(ConvertingTableColumnProcessorParameterList) - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.collections.ConvertingTableColumnProcessorParameterList

Creates a copy

convertJIPipeToImageJ(JIPipeData, boolean, boolean, String) - Method in interface org.hkijena.jipipe.api.compat.ImageJDatatypeAdapter

Converts a JIPipe data type to its corresponding ImageJ data type

convertJIPipeToImageJ(JIPipeData, boolean, boolean, String) - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageDataImageJAdapter

convertJIPipeToImageJ(JIPipeData, boolean, boolean, String) - Method in class org.hkijena.jipipe.extensions.filesystem.compat.PathDataImageJAdapter

convertJIPipeToImageJ(JIPipeData, boolean, boolean, String) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ImgPlusDataImageJAdapter

convertJIPipeToImageJ(JIPipeData, boolean, boolean, String) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.OMEImageDataImageJAdapter

convertJIPipeToImageJ(JIPipeData, boolean, boolean, String) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ResultsTableDataImageJAdapter

convertJIPipeToImageJ(JIPipeData, boolean, boolean, String) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ROIDataImageJAdapter

convertMultipleJIPipeToImageJ(List<JIPipeData>, boolean, boolean, String) - Method in interface org.hkijena.jipipe.api.compat.ImageJDatatypeAdapter

Converts multiple JIPipe data to their corresponding ImageJ data type.

convertMultipleJIPipeToImageJ(List<JIPipeData>, boolean, boolean, String) - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageDataImageJAdapter

convertMultipleJIPipeToImageJ(List<JIPipeData>, boolean, boolean, String) - Method in class org.hkijena.jipipe.extensions.filesystem.compat.PathDataImageJAdapter

convertMultipleJIPipeToImageJ(List<JIPipeData>, boolean, boolean, String) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ImgPlusDataImageJAdapter

convertMultipleJIPipeToImageJ(List<JIPipeData>, boolean, boolean, String) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.OMEImageDataImageJAdapter

convertMultipleJIPipeToImageJ(List<JIPipeData>, boolean, boolean, String) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ResultsTableDataImageJAdapter

convertMultipleJIPipeToImageJ(List<JIPipeData>, boolean, boolean, String) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ROIDataImageJAdapter

ConvertToAnnotationTable - Class in org.hkijena.jipipe.extensions.annotation.algorithms

Removes a specified annotation

ConvertToAnnotationTable(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.ConvertToAnnotationTable

ConvertToAnnotationTable(ConvertToAnnotationTable) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.ConvertToAnnotationTable

Copies the algorithm

convertToNumericColumn(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Converts the column into a numeric column.

convertToStringColumn(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Converts the column into a string column.

Convolve2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convolve

Wrapper around Convolver

Convolve2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convolve.Convolve2DAlgorithm

Instantiates a new node type.

Convolve2DAlgorithm(Convolve2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convolve.Convolve2DAlgorithm

Creates a copy

copyFrom(JIPipeDataSlot) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

Copies the source slot into this slot

copyMetadata(JIPipeDataSlotInfo) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo

Copies additional parameters such as custom names from the other slot

CopyPath - Class in org.hkijena.jipipe.extensions.filesystem.algorithms

Applies subfolder navigation to each input folder

CopyPath(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.CopyPath

CopyPath(CopyPath) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.CopyPath

Copies the algorithm

copySlotConfiguration(JIPipeGraphNode) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Copies the slot configuration from the other algorithm to this algorithm Override this method for special configuration cases

copyTo(JIPipeDynamicParameterCollection) - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection

Copies the parameter configuration into the target

CoreExtension - Class in org.hkijena.jipipe.extensions.core

The core extension

CoreExtension() - Constructor for class org.hkijena.jipipe.extensions.core.CoreExtension

countRoisOfType(int) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData

Counts all ROIs of given type

createAddSlotButton(JIPipeSlotType) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI

Function that creates the "Add slot" button

createBackup() - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBench

Creates a backup

createContextual(DeserializationContext, BeanProperty) - Method in class org.hkijena.jipipe.extensions.parameters.collections.ListParameter.Deserializer

createContextual(DeserializationContext, BeanProperty) - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameter.Deserializer

createContextual(DeserializationContext, BeanProperty) - Method in class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2D.Deserializer

createContextual(DeserializationContext, BeanProperty) - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameter.Deserializer

createContextual(DeserializationContext, BeanProperty) - Method in class org.hkijena.jipipe.extensions.parameters.pairs.Pair.Deserializer

createDataSet() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.BoxAndWhiskerCategoryPlotData

createDataSet() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CategoryPlotData

Creates a data set from the current series

createDataSet() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PiePlotData

Creates a data set from the current series

createDataSet() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.StatisticalCategoryPlotData

createDataSet() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.XYPlotData

Creates a data set from the current series

createDecreaseButton(int) - Method in class org.hkijena.jipipe.utils.ArrowLessScrollBarUI

createDesktopImage() - Static method in class org.hkijena.jipipe.utils.ScreenImage

Convenience method to create a BufferedImage of the desktop

CreateDirectory - Class in org.hkijena.jipipe.extensions.filesystem.algorithms

Applies subfolder navigation to each input folder

CreateDirectory(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.CreateDirectory

CreateDirectory(CreateDirectory) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.CreateDirectory

Copies the algorithm

createEditorFor(JIPipeWorkbench, JIPipeParameterAccess) - Method in class org.hkijena.jipipe.ui.registries.JIPipeUIParameterTypeRegistry

Creates editor for the parameter

createExporter(JIPipeProjectWorkbench, NodeGroup, String, String) - Static method in class org.hkijena.jipipe.ui.extensionbuilder.JIPipeJsonExporter

Creates a new exporter tab

createGradientLUT(Color, Color) - Static method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.SetLUTFromColorAlgorithm

createIconTextHTMLTable(String, URL) - Static method in class org.hkijena.jipipe.utils.StringUtils

Creates an HTML table with an icon and text.

createIconTextHTMLTableElement(String, URL) - Static method in class org.hkijena.jipipe.utils.StringUtils

Creates an HTML table with an icon and text.

createImage(JComponent) - Static method in class org.hkijena.jipipe.utils.ScreenImage

Create a BufferedImage for Swing components.

createImage(JComponent, Rectangle) - Static method in class org.hkijena.jipipe.utils.ScreenImage

Create a BufferedImage for Swing components.

createImage(Component) - Static method in class org.hkijena.jipipe.utils.ScreenImage

Create a BufferedImage for AWT components.

createImage(Rectangle) - Static method in class org.hkijena.jipipe.utils.ScreenImage

Create a BufferedImage from a rectangular region on the screen.

createImage(JComponent) - Static method in class org.hkijena.jipipe.utils.ScreenImageSVG

Create a BufferedImage for Swing components.

createImage(JComponent, Rectangle) - Static method in class org.hkijena.jipipe.utils.ScreenImageSVG

Create a BufferedImage for Swing components.

createIncreaseButton(int) - Method in class org.hkijena.jipipe.utils.ArrowLessScrollBarUI

createInstance(Class<T>, Object...) - Static method in interface org.hkijena.jipipe.api.data.JIPipeData

Instantiates a data class with the provided parameters This method is helpful if output data is constructed based on slot types

createInstance(Context) - Static method in class org.hkijena.jipipe.JIPipeDefaultRegistry

Instantiates the plugin service.

CreateLaunchersTool - Class in org.hkijena.jipipe.extensions.tools

CreateLaunchersTool(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.extensions.tools.CreateLaunchersTool

Creates a new instance

createLayoutManager() - Method in class org.hkijena.jipipe.utils.CustomTabbedPaneUI

createMenuTree(JMenu, Set<String>) - Static method in class org.hkijena.jipipe.utils.UIUtils

Creates a hierarchy of menus based on the menu paths vector

createNewEntry() - Method in class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2D

Creates a new entry

createNewEntry() - Method in class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2DFloat

createRightIconTextHTMLTable(String, URL) - Static method in class org.hkijena.jipipe.utils.StringUtils

Same as createIconTextHTMLTable but the icon is on the right side

createRightIconTextHTMLTableElement(String, URL) - Static method in class org.hkijena.jipipe.utils.StringUtils

Same as createIconTextHTMLTableElement but the icon is on the right side

createScreenshotPNG() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

Creates a screenshot of the whole graph compartment

createScreenshotSVG() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

Creates a screenshot of the whole graph compartment

createSlotConfiguration() - Static method in class org.hkijena.jipipe.api.compartments.algorithms.JIPipeProjectCompartment

createStarRatingLabel(String, double, int) - Static method in class org.hkijena.jipipe.utils.UIUtils

Creates a read-only "star-rating" label

createUI(JComponent) - Static method in class org.hkijena.jipipe.utils.CustomTabbedPaneUI

createUndoSnapshot() - Method in class org.hkijena.jipipe.ui.tableanalyzer.JIPipeTableEditor

Creates a new 'Undo' point

crop(boolean, boolean, boolean, boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData

Moves the ROI, so the bounding rectangle is at 0,0

crop() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

Sets node positions to make the top left to 0, 0

CropToRoiAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

CropToRoiAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.CropToRoiAlgorithm

CropToRoiAlgorithm(CropToRoiAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.CropToRoiAlgorithm

CSS_RULES - Static variable in class org.hkijena.jipipe.ui.components.MarkdownReader

CSS_RULES - Static variable in class org.hkijena.jipipe.ui.components.UserFriendlyErrorUI.EntryUI

CustomBoxAndWhiskerRenderer - Class in org.hkijena.jipipe.extensions.plots.datatypes

A box-and-whisker renderer.

CustomBoxAndWhiskerRenderer() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer

Default constructor.

CustomScrollPane - Class in org.hkijena.jipipe.utils

A custom scroll pane that can be modernized

CustomScrollPane(Component) - Constructor for class org.hkijena.jipipe.utils.CustomScrollPane

CustomScrollPane() - Constructor for class org.hkijena.jipipe.utils.CustomScrollPane

CustomSpinner - Class in org.hkijena.jipipe.utils

CustomSpinner(SpinnerModel) - Constructor for class org.hkijena.jipipe.utils.CustomSpinner

CustomSpinner() - Constructor for class org.hkijena.jipipe.utils.CustomSpinner

CustomTabbedPaneUI - Class in org.hkijena.jipipe.utils

MetalTabbedPaneUI without the slants

CustomTabbedPaneUI() - Constructor for class org.hkijena.jipipe.utils.CustomTabbedPaneUI

CustomTabbedPaneUI.TabbedPaneLayout - Class in org.hkijena.jipipe.utils

This class should be treated as a "protected" inner class.

CutCompartmentGraphHistorySnapshot - Class in org.hkijena.jipipe.api.history

CutCompartmentGraphHistorySnapshot(JIPipeProject, JIPipeProjectCompartment) - Constructor for class org.hkijena.jipipe.api.history.CutCompartmentGraphHistorySnapshot

CutNodeGraphHistorySnapshot - Class in org.hkijena.jipipe.api.history

CutNodeGraphHistorySnapshot(JIPipeGraph, Set<JIPipeGraphNode>) - Constructor for class org.hkijena.jipipe.api.history.CutNodeGraphHistorySnapshot

D

DARK_GRAY - Static variable in class org.hkijena.jipipe.utils.ModernMetalTheme

DataBatchAssistantUI - Class in org.hkijena.jipipe.ui.batchassistant

A tool that assists the user in configuring batch generation for JIPipeIteratingAlgorithm and JIPipeMergingAlgorithm

DataBatchAssistantUI(JIPipeProjectWorkbench, JIPipeGraphNode, Runnable) - Constructor for class org.hkijena.jipipe.ui.batchassistant.DataBatchAssistantUI

DataBatchGenerationSettings() - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm.DataBatchGenerationSettings

DataBatchGenerationSettings(JIPipeIteratingAlgorithm.DataBatchGenerationSettings) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm.DataBatchGenerationSettings

DataBatchGenerationSettings() - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm.DataBatchGenerationSettings

DataBatchGenerationSettings(JIPipeMergingAlgorithm.DataBatchGenerationSettings) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm.DataBatchGenerationSettings

DataBatchUI - Class in org.hkijena.jipipe.ui.batchassistant

DataBatchUI(JIPipeProjectWorkbench, JIPipeGraphNode, JIPipeMergingDataBatch) - Constructor for class org.hkijena.jipipe.ui.batchassistant.DataBatchUI

DataConverterEdge() - Constructor for class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry.DataConverterEdge

DataSlotTableUI - Class in org.hkijena.jipipe.ui.batchassistant

UI that displays a JIPipeDataSlot

DataSlotTableUI(JIPipeProjectWorkbench, JIPipeDataSlot) - Constructor for class org.hkijena.jipipe.ui.batchassistant.DataSlotTableUI

DataSlotTableUI.WrapperColumnHeaderRenderer - Class in org.hkijena.jipipe.ui.batchassistant

Renders the column header of DataSlotTableUI.WrapperTableModel

DataSlotTableUI.WrapperTableModel - Class in org.hkijena.jipipe.ui.batchassistant

Wraps around a JIPipeDataSlot to display a "toString" column

DataSourceNodeTypeCategory - Class in org.hkijena.jipipe.api.nodes.categories

DataSourceNodeTypeCategory() - Constructor for class org.hkijena.jipipe.api.nodes.categories.DataSourceNodeTypeCategory

DataToPreviewAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.misc

DataToPreviewAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.misc.DataToPreviewAlgorithm

DataToPreviewAlgorithm(DataToPreviewAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.misc.DataToPreviewAlgorithm

DataTypeDeselectedEvent(JIPipeDataTypePicker, JIPipeDataInfo) - Constructor for class org.hkijena.jipipe.ui.components.JIPipeDataTypePicker.DataTypeDeselectedEvent

DatatypeRegisteredEvent - Class in org.hkijena.jipipe.api.events

Triggered when a new data type is registered

DatatypeRegisteredEvent(String) - Constructor for class org.hkijena.jipipe.api.events.DatatypeRegisteredEvent

DataTypeSelectedEvent(JIPipeDataTypePicker, JIPipeDataInfo) - Constructor for class org.hkijena.jipipe.ui.components.JIPipeDataTypePicker.DataTypeSelectedEvent

deactivateUpdateSite(UpdateSite) - Method in class org.hkijena.jipipe.ui.ijupdater.JIPipeImageJPluginManager

DECREASE_DIMENSION_CONVERSION - Static variable in class org.hkijena.jipipe.extensions.imagejalgorithms.ImageJAlgorithmsExtension

Conversion rules convert higher-dimensional data to a lower-dimensional counterpart. 2D data remains 2D data.

DefaultAlgorithmUIActionRequestedEvent - Class in org.hkijena.jipipe.ui.events

Triggered when an JIPipeNodeUI requests a default action (double click)

DefaultAlgorithmUIActionRequestedEvent(JIPipeNodeUI) - Constructor for class org.hkijena.jipipe.ui.events.DefaultAlgorithmUIActionRequestedEvent

DefaultEnumItemInfo - Class in org.hkijena.jipipe.extensions.parameters.primitives

Default implementation of EnumItemInfo

DefaultEnumItemInfo() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.DefaultEnumItemInfo

DefaultJIPipeInputSlot - Class in org.hkijena.jipipe.api.nodes

Default implementation of JIPipeInputSlot

DefaultJIPipeInputSlot(Class<? extends JIPipeData>, String, boolean) - Constructor for class org.hkijena.jipipe.api.nodes.DefaultJIPipeInputSlot

DefaultJIPipeOutputSlot - Class in org.hkijena.jipipe.api.nodes

Default implementation of JIPipeOutputSlot

DefaultJIPipeOutputSlot(Class<? extends JIPipeData>, String, String, boolean) - Constructor for class org.hkijena.jipipe.api.nodes.DefaultJIPipeOutputSlot

DefineRectangularRoiAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

Wrapper around RoiManager

DefineRectangularRoiAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.DefineRectangularRoiAlgorithm

Instantiates a new node type.

DefineRectangularRoiAlgorithm(DefineRectangularRoiAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.DefineRectangularRoiAlgorithm

Instantiates a new node type.

DefineTablesAlgorithm - Class in org.hkijena.jipipe.extensions.tables.algorithms

Algorithm that annotates all data with the same annotation

DefineTablesAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.DefineTablesAlgorithm

DefineTablesAlgorithm(DefineTablesAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.DefineTablesAlgorithm

Copies the algorithm

DegreeToRadiansColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting

Applies a abs(x) function

DegreeToRadiansColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.DegreeToRadiansColumnOperation

DeleteCompartmentGraphHistorySnapshot - Class in org.hkijena.jipipe.api.history

DeleteCompartmentGraphHistorySnapshot(JIPipeProject, JIPipeProjectCompartment) - Constructor for class org.hkijena.jipipe.api.history.DeleteCompartmentGraphHistorySnapshot

DeleteCompartmentUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu

DeleteCompartmentUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.DeleteCompartmentUIContextAction

DeleteNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu

DeleteNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.DeleteNodeUIContextAction

description() - Method in class org.hkijena.jipipe.api.JIPipeDefaultDocumentation

deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.api.compartments.JIPipeExportedCompartment.Deserializer

deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.api.data.JIPipeDataInfo.Deserializer

deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo.Deserializer

deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.api.grouping.parameters.NodeGroupContents.Deserializer

deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.api.JIPipeProject.Deserializer

deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph.Deserializer

deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess.Deserializer

deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.extensions.parameters.collections.ListParameter.Deserializer

deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.extensions.parameters.colors.ColorDeserializer

deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.extensions.parameters.enums.DynamicCategoryEnumParameter.Deserializer

deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameter.Deserializer

deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.extensions.parameters.generators.IntegerRange.Deserializer

deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2D.Deserializer

deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameter.Deserializer

deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.extensions.parameters.pairs.Pair.Deserializer

deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DynamicStringEnumParameter.Deserializer

deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.extensions.parameters.references.JIPipeAlgorithmIconRef.Deserializer

deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.extensions.parameters.references.JIPipeDataInfoRef.Deserializer

deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.extensions.parameters.references.JIPipeNodeInfoRef.Deserializer

deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.extensions.parameters.roi.RectangleDeserializer

deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable.Deserializer

deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.JIPipeJsonExtension.Deserializer

deserializeKey(String, DeserializationContext) - Method in class org.hkijena.jipipe.api.data.JIPipeDataInfo.KeyDeserializer

deserializeParametersFromJson(JIPipeParameterCollection, JsonNode, JIPipeValidityReport) - Static method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

Deserializes parameters from JSON

Deserializer() - Constructor for class org.hkijena.jipipe.api.compartments.JIPipeExportedCompartment.Deserializer

Deserializer() - Constructor for class org.hkijena.jipipe.api.data.JIPipeDataInfo.Deserializer

Deserializer() - Constructor for class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo.Deserializer

Deserializer() - Constructor for class org.hkijena.jipipe.api.grouping.parameters.NodeGroupContents.Deserializer

Deserializer() - Constructor for class org.hkijena.jipipe.api.JIPipeProject.Deserializer

Deserializer() - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeGraph.Deserializer

Deserializer() - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess.Deserializer

Deserializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.collections.ListParameter.Deserializer

Deserializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.enums.DynamicCategoryEnumParameter.Deserializer

Deserializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameter.Deserializer

Deserializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.generators.IntegerRange.Deserializer

Deserializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2D.Deserializer

Deserializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameter.Deserializer

Deserializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.Pair.Deserializer

Deserializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.DynamicStringEnumParameter.Deserializer

Deserializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.references.JIPipeAlgorithmIconRef.Deserializer

Deserializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.references.JIPipeDataInfoRef.Deserializer

Deserializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.references.JIPipeNodeInfoRef.Deserializer

Deserializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.table.ParameterTable.Deserializer

Deserializer() - Constructor for class org.hkijena.jipipe.JIPipeJsonExtension.Deserializer

DespeckleFilter2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise

Wrapper around RankFilters

DespeckleFilter2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.DespeckleFilter2DAlgorithm

Instantiates a new node type.

DespeckleFilter2DAlgorithm(DespeckleFilter2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.DespeckleFilter2DAlgorithm

Instantiates a new node type.

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.color.ImagePlusColor8UData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.color.ImagePlusColorData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.color.ImagePlusColorRGBData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.color.ImagePlus2DColor8UData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.color.ImagePlus2DColorData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.color.ImagePlus2DColorRGBData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale.ImagePlus2DGreyscale16UData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale.ImagePlus2DGreyscale32FData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale.ImagePlus2DGreyscale8UData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale.ImagePlus2DGreyscaleData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale.ImagePlus2DGreyscaleMaskData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.ImagePlus2DData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.color.ImagePlus3DColor8UData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.color.ImagePlus3DColorData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.color.ImagePlus3DColorRGBData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale.ImagePlus3DGreyscale16UData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale.ImagePlus3DGreyscale32FData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale.ImagePlus3DGreyscale8UData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale.ImagePlus3DGreyscaleData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale.ImagePlus3DGreyscaleMaskData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.ImagePlus3DData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.color.ImagePlus4DColor8UData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.color.ImagePlus4DColorData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.color.ImagePlus4DColorRGBData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale.ImagePlus4DGreyscale16UData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale.ImagePlus4DGreyscale32FData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale.ImagePlus4DGreyscale8UData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale.ImagePlus4DGreyscaleData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale.ImagePlus4DGreyscaleMaskData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.ImagePlus4DData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.color.ImagePlus5DColor8UData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.color.ImagePlus5DColorData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.color.ImagePlus5DColorRGBData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale.ImagePlus5DGreyscale16UData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale.ImagePlus5DGreyscale32FData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale.ImagePlus5DGreyscale8UData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale.ImagePlus5DGreyscaleData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale.ImagePlus5DGreyscaleMaskData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.ImagePlus5DData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft.ImagePlusFFT2DData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft.ImagePlusFFT3DData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft.ImagePlusFFT4DData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft.ImagePlusFFT5DData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft.ImagePlusFFTData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale.ImagePlusGreyscale16UData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale.ImagePlusGreyscale32FData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale.ImagePlusGreyscale8UData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale.ImagePlusGreyscaleData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale.ImagePlusGreyscaleMaskData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ImagePlusData

The dimensionality of this data

DisableNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu

DisableNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisableNodeUIContextAction

disableOnNonMatch() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.CollapseIOInterfaceNodeUIContextAction

disableOnNonMatch() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DeleteCompartmentUIContextAction

disableOnNonMatch() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DeleteNodeUIContextAction

disableOnNonMatch() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisableNodeUIContextAction

disableOnNonMatch() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisablePassThroughNodeUIContextAction

disableOnNonMatch() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisableSaveOutputsNodeUIContextAction

disableOnNonMatch() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnableNodeUIContextAction

disableOnNonMatch() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnablePassThroughNodeUIContextAction

disableOnNonMatch() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnableSaveOutputsNodeUIContextAction

disableOnNonMatch() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportCompartmentAsJsonNodeUIContextAction

disableOnNonMatch() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportCompartmentToNodeUIContextAction

disableOnNonMatch() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportNodeUIContextAction

disableOnNonMatch() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.GroupNodeUIContextAction

disableOnNonMatch() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.InvertSelectionNodeUIContextAction

disableOnNonMatch() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.IsolateNodesUIContextAction

disableOnNonMatch() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.JsonAlgorithmToGroupNodeUIContextAction

disableOnNonMatch() - Method in interface org.hkijena.jipipe.ui.grapheditor.contextmenu.NodeUIContextAction

Determines if an item should be disabled or removed if it does not match

disableOnNonMatch() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.SelectAllNodeUIContextAction

disableOnNonMatch() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.SelectAndMoveNodeHereNodeUIContextAction

DisablePassThroughNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu

DisablePassThroughNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisablePassThroughNodeUIContextAction

DisableSaveOutputsNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu

DisableSaveOutputsNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisableSaveOutputsNodeUIContextAction

disconnect(JIPipeDataSlot, JIPipeDataSlot, boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Disconnects an input and an output slot

disconnectAll(JIPipeDataSlot, boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Completely disconnects a slot

discover(ExtensionSettings, JIPipeRegistryIssues) - Method in class org.hkijena.jipipe.JIPipeDefaultRegistry

Discovers extension services that provide new JIPipe modules

display(String, JIPipeWorkbench) - Method in class org.hkijena.jipipe.api.compartments.datatypes.JIPipeCompartmentOutputData

display(String, JIPipeWorkbench) - Method in interface org.hkijena.jipipe.api.data.JIPipeData

This function should display the data in the GUI

display(String, JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageData

display(String, JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.filesystem.dataypes.PathData

display(String, JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ImagePlusData

display(String, JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.OMEImageData

display(String, JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData

display(String, JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.multiparameters.datatypes.ParametersData

display(String, JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData

display(String, JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.strings.StringData

display(String, JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.DoubleArrayTableColumn

display(String, JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

display(String, JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.RowIndexTableColumn

display(String, JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.StringArrayTableColumn

display(String, JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ZeroTableColumn

display(String, JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.tables.TableColumnReference

displayErrors(Exception) - Method in class org.hkijena.jipipe.ui.components.UserFriendlyErrorUI

Adds an exception to the display.

displayErrors(JIPipeValidityReport) - Method in class org.hkijena.jipipe.ui.components.UserFriendlyErrorUI

Adds a report to the display Does not add the necessary vertical glue.

DisplayRangeCalibrationAlgorithm - Class in org.hkijena.jipipe.extensions.imagejdatatypes.algorithms

DisplayRangeCalibrationAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.DisplayRangeCalibrationAlgorithm

DisplayRangeCalibrationAlgorithm(DisplayRangeCalibrationAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.DisplayRangeCalibrationAlgorithm

dispose() - Method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWindow

dispose() - Method in class org.hkijena.jipipe.ui.JIPipeProjectWindow

DistanceTransformWatershed2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary

Wrapper around EDM

DistanceTransformWatershed2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary.DistanceTransformWatershed2DAlgorithm

Instantiates a new node type.

DistanceTransformWatershed2DAlgorithm(DistanceTransformWatershed2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary.DistanceTransformWatershed2DAlgorithm

Instantiates a new node type.

DivideByMaximumAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math

Wrapper around ImageProcessor

DivideByMaximumAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.DivideByMaximumAlgorithm

Instantiates a new node type.

DivideByMaximumAlgorithm(DivideByMaximumAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.DivideByMaximumAlgorithm

Instantiates a new node type.

DOCUMENTATION_BELOW - Static variable in class org.hkijena.jipipe.ui.components.FormPanel

Flag that indicates that documentation should be shown below if enabled.

DocumentChangeListener - Class in org.hkijena.jipipe.ui.components

Listener for any changes in a Document

DocumentChangeListener() - Constructor for class org.hkijena.jipipe.ui.components.DocumentChangeListener

DocumentedComponent - Class in org.hkijena.jipipe.ui.components

Wrapper around a component that adds a split pane that shows documentation

DocumentedComponent(boolean, MarkdownDocument, Component) - Constructor for class org.hkijena.jipipe.ui.components.DocumentedComponent

DocumentTabListCellRenderer - Class in org.hkijena.jipipe.ui.components

Renders DocumentTabPane tabs

DocumentTabListCellRenderer() - Constructor for class org.hkijena.jipipe.ui.components.DocumentTabListCellRenderer

Creates a new renderer

DocumentTabPane - Class in org.hkijena.jipipe.ui.components

JTabbedPane with larger tabs, ability to close tabs, singleton tabs that are hidden instead of being closed

DocumentTabPane() - Constructor for class org.hkijena.jipipe.ui.components.DocumentTabPane

Creates a new instance

documentTabPane - Variable in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWorkbench

documentTabPane - Variable in class org.hkijena.jipipe.ui.JIPipeProjectWorkbench

DocumentTabPane.CloseMode - Enum in org.hkijena.jipipe.ui.components

Behavior of the tab close button

DocumentTabPane.DocumentTab - Class in org.hkijena.jipipe.ui.components

Encapsulates a tab

doInBackground() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.utils.Hough_Circle

doInBackground() - Method in class org.hkijena.jipipe.ui.running.JIPipeRunWorker

done() - Method in class org.hkijena.jipipe.ui.ijupdater.IJProgressAdapter

done() - Method in class org.hkijena.jipipe.ui.ijupdater.ProgressAdapter

done() - Method in class org.hkijena.jipipe.ui.running.JIPipeRunWorker

DoubleAndDoublePair - Class in org.hkijena.jipipe.extensions.parameters.pairs

A parameter that renames an integer into another integer

DoubleAndDoublePair() - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.DoubleAndDoublePair

Creates a new instance

DoubleAndDoublePair(DoubleAndDoublePair) - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.DoubleAndDoublePair

Creates a copy

DoubleAndDoublePair.List - Class in org.hkijena.jipipe.extensions.parameters.pairs

A collection of multiple DoubleAndDoublePair

DoubleArrayColumnToTableConverter - Class in org.hkijena.jipipe.extensions.tables

Converts a column to a table

DoubleArrayColumnToTableConverter() - Constructor for class org.hkijena.jipipe.extensions.tables.DoubleArrayColumnToTableConverter

DoubleArrayTableColumn - Class in org.hkijena.jipipe.extensions.tables.datatypes

TableColumn that contains doubles.

DoubleArrayTableColumn(double[], String) - Constructor for class org.hkijena.jipipe.extensions.tables.datatypes.DoubleArrayTableColumn

Creates a new instance

DoubleList - Class in org.hkijena.jipipe.extensions.parameters.primitives

A list of Double

DoubleList() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.DoubleList

Creates a new empty list

DoubleList(DoubleList) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.DoubleList

Creates a copy

DoubleParameterTypeInfo - Class in org.hkijena.jipipe.extensions.parameters.primitives

Info for Double

DoubleParameterTypeInfo() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.DoubleParameterTypeInfo

DoublePredicate - Class in org.hkijena.jipipe.extensions.parameters.predicates

A filter for Double

DoublePredicate() - Constructor for class org.hkijena.jipipe.extensions.parameters.predicates.DoublePredicate

Initializes a new filter.

DoublePredicate(DoublePredicate.Mode, double, boolean) - Constructor for class org.hkijena.jipipe.extensions.parameters.predicates.DoublePredicate

Initializes a new filter

DoublePredicate(DoublePredicate) - Constructor for class org.hkijena.jipipe.extensions.parameters.predicates.DoublePredicate

Copies the filter

DoublePredicate.List - Class in org.hkijena.jipipe.extensions.parameters.predicates

A collection of multiple DoublePredicate The filters are connected via "OR"

DoublePredicate.Mode - Enum in org.hkijena.jipipe.extensions.parameters.predicates

Available filter modes

DoublePredicateParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.predicates

Editor for DoublePredicate

DoublePredicateParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.predicates.DoublePredicateParameterEditorUI

DoublePrimitiveParameterTypeInfo - Class in org.hkijena.jipipe.extensions.parameters.primitives

Info for Double

DoublePrimitiveParameterTypeInfo() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.DoublePrimitiveParameterTypeInfo

DoubleRangeParameterGenerator - Class in org.hkijena.jipipe.extensions.parameters.generators

Generates Double

DoubleRangeParameterGenerator(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.extensions.parameters.generators.DoubleRangeParameterGenerator

Creates a new instance

download(URL, Path, Consumer<Integer>) - Static method in class org.hkijena.jipipe.utils.WebUtils

Downloads the URL to the output file

DownloadFilesDataSource - Class in org.hkijena.jipipe.extensions.filesystem.datasources

DownloadFilesDataSource(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.datasources.DownloadFilesDataSource

DownloadFilesDataSource(DownloadFilesDataSource) - Constructor for class org.hkijena.jipipe.extensions.filesystem.datasources.DownloadFilesDataSource

dragDropEnd(DragSourceDropEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeConnectionDragAndDropBehavior

dragEnter(DropTargetDragEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeConnectionDragAndDropBehavior

dragEnter(DragSourceDragEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeConnectionDragAndDropBehavior

dragEnter(DropTargetDragEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeStandardDragAndDropBehavior

dragExit(DropTargetEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeConnectionDragAndDropBehavior

dragExit(DragSourceEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeConnectionDragAndDropBehavior

dragExit(DropTargetEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeStandardDragAndDropBehavior

dragGestureRecognized(DragGestureEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeConnectionDragAndDropBehavior

dragOver(DropTargetDragEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeConnectionDragAndDropBehavior

dragOver(DragSourceDragEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeConnectionDragAndDropBehavior

dragOver(DropTargetDragEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeStandardDragAndDropBehavior

drawCheck(Component, Graphics, int, int) - Method in class org.hkijena.jipipe.utils.CheckBoxIcon

drawCurrentSegment(Graphics2D, JIPipeGraphViewMode) - Method in class org.hkijena.jipipe.ui.grapheditor.connections.NonCollidingRectangularLineDrawer

drawCurrentSegment(Graphics2D, JIPipeGraphViewMode) - Method in class org.hkijena.jipipe.ui.grapheditor.connections.RectangularLineDrawer

drawHorizontalItem(Graphics2D, CategoryItemRendererState, Rectangle2D, CategoryPlot, CategoryAxis, ValueAxis, CategoryDataset, int, int) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer

Draws the visual representation of a single data item when the plot has a horizontal orientation.

drawItem(Graphics2D, CategoryItemRendererState, Rectangle2D, CategoryPlot, CategoryAxis, ValueAxis, CategoryDataset, int, int, int) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer

Draw a single data item.

drawMask(boolean, boolean, int, ImagePlus) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData

Draws the ROI over an existing mask image

drawVerticalItem(Graphics2D, CategoryItemRendererState, Rectangle2D, CategoryPlot, CategoryAxis, ValueAxis, CategoryDataset, int, int) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer

Draws the visual representation of a single data item when the plot has a vertical orientation.

drop(DropTargetDropEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeConnectionDragAndDropBehavior

drop(DropTargetDropEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeStandardDragAndDropBehavior

dropActionChanged(DropTargetDragEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeConnectionDragAndDropBehavior

dropActionChanged(DragSourceDragEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeConnectionDragAndDropBehavior

dropActionChanged(DropTargetDragEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeStandardDragAndDropBehavior

dummyAccess(Class<?>) - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess.Builder

Sets up a dummy access.

duplicate() - Method in class org.hkijena.jipipe.api.compartments.datatypes.JIPipeCompartmentOutputData

duplicate() - Method in interface org.hkijena.jipipe.api.data.JIPipeData

Duplicates the data

duplicate() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

duplicate() - Method in interface org.hkijena.jipipe.api.data.JIPipeSlotConfiguration

Creates a deep copy

duplicate() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Copies the algorithm.

duplicate(Object) - Method in class org.hkijena.jipipe.api.parameters.JIPipeDefaultParameterTypeInfo

duplicate(Object) - Method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterTypeInfo

Duplicates the parameter

duplicate() - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageData

duplicate() - Method in class org.hkijena.jipipe.extensions.filesystem.dataypes.PathData

duplicate() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ImagePlusData

duplicate() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.OMEImageData

duplicate() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData

duplicate() - Method in class org.hkijena.jipipe.extensions.multiparameters.datatypes.ParametersData

duplicate(Object) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.BooleanParameterTypeInfo

duplicate(Object) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.BooleanPrimitiveParameterTypeInfo

duplicate(Object) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.ByteParameterTypeInfo

duplicate(Object) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.BytePrimitiveParameterTypeInfo

duplicate(Object) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DoubleParameterTypeInfo

duplicate(Object) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DoublePrimitiveParameterTypeInfo

duplicate(Object) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.EnumParameterTypeInfo

duplicate(Object) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.FloatParameterTypeInfo

duplicate(Object) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.FloatPrimitiveParameterTypeInfo

duplicate(Object) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.IntParameterTypeInfo

duplicate(Object) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.IntPrimitiveParameterTypeInfo

duplicate(Object) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.LongParameterTypeInfo

duplicate(Object) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.LongPrimitiveParameterTypeInfo

duplicate(Object) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.ShortParameterTypeInfo

duplicate(Object) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.ShortPrimitiveParameterTypeInfo

duplicate() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData

duplicate() - Method in class org.hkijena.jipipe.extensions.strings.StringData

duplicate() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.DoubleArrayTableColumn

duplicate() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

duplicate() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.RowIndexTableColumn

duplicate() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.StringArrayTableColumn

duplicate() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ZeroTableColumn

duplicate() - Method in class org.hkijena.jipipe.extensions.tables.TableColumnReference

duplicateColumn(int, String) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Duplicates a column

DynamicCategoryEnumParameter - Class in org.hkijena.jipipe.extensions.parameters.enums

DynamicCategoryEnumParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.enums.DynamicCategoryEnumParameter

Creates a new instance with null value

DynamicCategoryEnumParameter(DynamicStringEnumParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.enums.DynamicCategoryEnumParameter

Creates a copy

DynamicCategoryEnumParameter(String) - Constructor for class org.hkijena.jipipe.extensions.parameters.enums.DynamicCategoryEnumParameter

Creates a new instance

DynamicCategoryEnumParameter.Deserializer - Class in org.hkijena.jipipe.extensions.parameters.enums

Deserializes DynamicCategoryEnumParameter

DynamicCategoryEnumParameter.Serializer - Class in org.hkijena.jipipe.extensions.parameters.enums

Serializes DynamicCategoryEnumParameter

DynamicEnumParameter<T> - Class in org.hkijena.jipipe.extensions.parameters.primitives

Parameter that acts as dynamic enum.

DynamicEnumParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.DynamicEnumParameter

Creates a new instance with null value

DynamicEnumParameter(T) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.DynamicEnumParameter

Creates a new instance

DynamicEnumParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.primitives

A parameter editor UI that works for all enumerations

DynamicEnumParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.DynamicEnumParameterEditorUI

DynamicEnumParameterSettings - Annotation Type in org.hkijena.jipipe.extensions.parameters.primitives

Settings for dynamic enum-like parameters for non Enum data types

DynamicSetParameter<T> - Class in org.hkijena.jipipe.extensions.parameters.primitives

Parameter that acts as dynamic enum where a set of items can be selected Use DynamicEnumParameterSettings to define a supplier for the items.

DynamicSetParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.DynamicSetParameter

Creates a new instance with null value

DynamicSetParameter(DynamicSetParameter<T>) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.DynamicSetParameter

DynamicSetParameter(Set<T>) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.DynamicSetParameter

DynamicSetParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.primitives

A parameter editor UI that works for all enumerations

DynamicSetParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.DynamicSetParameterEditorUI

DynamicSetParameterSettings - Annotation Type in org.hkijena.jipipe.extensions.parameters.primitives

Settings for dynamic enum-like parameters for non Enum data types

DynamicStringEnumParameter - Class in org.hkijena.jipipe.extensions.parameters.primitives

Parameter that acts as dynamic enum.

DynamicStringEnumParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.DynamicStringEnumParameter

Creates a new instance with null value

DynamicStringEnumParameter(DynamicStringEnumParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.DynamicStringEnumParameter

Creates a copy

DynamicStringEnumParameter(String) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.DynamicStringEnumParameter

Creates a new instance

DynamicStringEnumParameter.Deserializer - Class in org.hkijena.jipipe.extensions.parameters.primitives

Deserializes DynamicStringEnumParameter

DynamicStringEnumParameter.Serializer - Class in org.hkijena.jipipe.extensions.parameters.primitives

Serializes DynamicStringEnumParameter

E

Edge() - Constructor for class org.hkijena.jipipe.ui.grapheditor.layout.MSTGraphAutoLayoutMethod.Edge

edgeAdded(GraphEdgeChangeEvent<V, E>) - Method in class org.hkijena.jipipe.utils.WeakPredecessorInspector

EdgeConnectGraphHistorySnapshot - Class in org.hkijena.jipipe.api.history

EdgeConnectGraphHistorySnapshot(JIPipeGraph, JIPipeDataSlot, JIPipeDataSlot) - Constructor for class org.hkijena.jipipe.api.history.EdgeConnectGraphHistorySnapshot

EdgeDisconnectAllTargetsGraphHistorySnapshot - Class in org.hkijena.jipipe.api.history

EdgeDisconnectAllTargetsGraphHistorySnapshot(JIPipeGraph, JIPipeDataSlot) - Constructor for class org.hkijena.jipipe.api.history.EdgeDisconnectAllTargetsGraphHistorySnapshot

EdgeDisconnectGraphHistorySnapshot - Class in org.hkijena.jipipe.api.history

EdgeDisconnectGraphHistorySnapshot(JIPipeGraph, JIPipeDataSlot, JIPipeDataSlot) - Constructor for class org.hkijena.jipipe.api.history.EdgeDisconnectGraphHistorySnapshot

edgeRemoved(GraphEdgeChangeEvent<V, E>) - Method in class org.hkijena.jipipe.utils.WeakPredecessorInspector

EditAlgorithmSlotPanel - Class in org.hkijena.jipipe.ui.components

UI that edits an existing algorithm slot

EditAlgorithmSlotPanel(JIPipeDataSlot, JIPipeGraphHistory) - Constructor for class org.hkijena.jipipe.ui.components.EditAlgorithmSlotPanel

Creates a new instance

EigenvalueSelection2D - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.ij1

Available options to which Eigenvalue to select This is for 2D eigenvalues where two images are generated

EnableNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu

EnableNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnableNodeUIContextAction

EnablePassThroughNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu

EnablePassThroughNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnablePassThroughNodeUIContextAction

EnableSaveOutputsNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu

EnableSaveOutputsNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnableSaveOutputsNodeUIContextAction

endModificationBlock() - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection

Ends a modification block started by beginModificationBlock().

enqueue(JIPipeRunnable) - Method in class org.hkijena.jipipe.ui.running.JIPipeRunnerQueue

Schedules a new runnable

Entry(String, String, String, String, String) - Constructor for class org.hkijena.jipipe.ui.components.UserFriendlyErrorUI.Entry

EntryUI(UserFriendlyErrorUI.Entry) - Constructor for class org.hkijena.jipipe.ui.components.UserFriendlyErrorUI.EntryUI

EnumItemInfo - Interface in org.hkijena.jipipe.extensions.parameters.primitives

Used by EnumParameterEditorUI to extract icons and other information for its enum value

EnumParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.primitives

A parameter editor UI that works for all enumerations

EnumParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.EnumParameterEditorUI

EnumParameterSettings - Annotation Type in org.hkijena.jipipe.extensions.parameters.primitives

Settings for EnumParameterEditorUI

EnumParameterTypeInfo - Class in org.hkijena.jipipe.extensions.parameters.primitives

Helper class to register Enum parameters

EnumParameterTypeInfo(String, Class<? extends Enum<?>>, String, String) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.EnumParameterTypeInfo

equals(Object) - Method in class org.hkijena.jipipe.api.data.JIPipeAnnotation

Returns true if the name and value are equal

equals(Object) - Method in class org.hkijena.jipipe.api.data.JIPipeDataInfo

equals(Object) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo

equals(Object) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReference

equals(Object) - Method in class org.hkijena.jipipe.api.JIPipeProjectCache.State

equals(Object) - Method in class org.hkijena.jipipe.api.JIPipeProjectTemplate

equals(Object) - Method in class org.hkijena.jipipe.api.nodes.JIPipeDataBatchKey

equals(Object) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.SliceIndex

equals(Object) - Method in class org.hkijena.jipipe.extensions.parameters.predicates.DoublePredicate

equals(Object) - Method in class org.hkijena.jipipe.extensions.parameters.predicates.PathPredicate

equals(Object) - Method in class org.hkijena.jipipe.extensions.parameters.predicates.StringPredicate

equals(Object) - Method in class org.hkijena.jipipe.extensions.parameters.references.JIPipeDataInfoRef

equals(Object) - Method in class org.hkijena.jipipe.extensions.parameters.scripts.ScriptParameter

equals(Object) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer

Tests this renderer for equality with an arbitrary object.

escapeString(String) - Static method in class org.hkijena.jipipe.utils.MacroUtils

Escapes a string to be used within macros

expandAllTree(JTree) - Static method in class org.hkijena.jipipe.utils.UIUtils

Expands the whole tree

expandImage(ImageProcessor, int, int, int, int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformEqualCanvasSize2DAlgorithm

expandImage(ImageProcessor, int, int, int, int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformExpandCanvas2DAlgorithm

expandLeftTop(int, int) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

Expands the canvas by moving all algorithms

expandRightBottom(int, int) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

Expands the canvas

expandStack(ImageStack, int, int, int, int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformEqualCanvasSize2DAlgorithm

expandStack(ImageStack, int, int, int, int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformExpandCanvas2DAlgorithm

ExpColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting

Applies a exponential (base e) function

ExpColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.ExpColumnOperation

ExplodeRoiAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

Wrapper around RoiManager

ExplodeRoiAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExplodeRoiAlgorithm

Instantiates a new node type.

ExplodeRoiAlgorithm(ExplodeRoiAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExplodeRoiAlgorithm

Instantiates a new node type.

ExportCompartmentAsJsonNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu

ExportCompartmentAsJsonNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportCompartmentAsJsonNodeUIContextAction

ExportCompartmentToNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu

ExportCompartmentToNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportCompartmentToNodeUIContextAction

ExportData - Class in org.hkijena.jipipe.extensions.filesystem.algorithms

ExportData(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ExportData

ExportData(ExportData) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ExportData

ExportDataByParameter - Class in org.hkijena.jipipe.extensions.filesystem.algorithms

ExportDataByParameter(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ExportDataByParameter

ExportDataByParameter(ExportDataByParameter) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ExportDataByParameter

ExportNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu

ExportNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportNodeUIContextAction

EXTENSION_FILTER_CSV - Static variable in class org.hkijena.jipipe.utils.UIUtils

EXTENSION_FILTER_HTML - Static variable in class org.hkijena.jipipe.utils.UIUtils

EXTENSION_FILTER_JIP - Static variable in class org.hkijena.jipipe.utils.UIUtils

EXTENSION_FILTER_JIPC - Static variable in class org.hkijena.jipipe.utils.UIUtils

EXTENSION_FILTER_JIPE - Static variable in class org.hkijena.jipipe.utils.UIUtils

EXTENSION_FILTER_JPEG - Static variable in class org.hkijena.jipipe.utils.UIUtils

EXTENSION_FILTER_MD - Static variable in class org.hkijena.jipipe.utils.UIUtils

EXTENSION_FILTER_PDF - Static variable in class org.hkijena.jipipe.utils.UIUtils

EXTENSION_FILTER_PNG - Static variable in class org.hkijena.jipipe.utils.UIUtils

EXTENSION_FILTER_SVG - Static variable in class org.hkijena.jipipe.utils.UIUtils

ExtensionContentAddedEvent - Class in org.hkijena.jipipe.api.events

Generated when content is added to an JIPipeJsonExtension

ExtensionContentAddedEvent(JIPipeJsonExtension, Object) - Constructor for class org.hkijena.jipipe.api.events.ExtensionContentAddedEvent

ExtensionContentRemovedEvent - Class in org.hkijena.jipipe.api.events

Generated when content is removed from an JIPipeJsonExtension

ExtensionContentRemovedEvent(JIPipeJsonExtension, Object) - Constructor for class org.hkijena.jipipe.api.events.ExtensionContentRemovedEvent

ExtensionDiscoveredEvent - Class in org.hkijena.jipipe.api.events

Triggered when a new extension was discovered

ExtensionDiscoveredEvent(JIPipeDefaultRegistry, JIPipeDependency) - Constructor for class org.hkijena.jipipe.api.events.ExtensionDiscoveredEvent

ExtensionRegisteredEvent - Class in org.hkijena.jipipe.api.events

Triggered by JIPipeRegistry when an extension is registered

ExtensionRegisteredEvent(JIPipeRegistry, JIPipeDependency) - Constructor for class org.hkijena.jipipe.api.events.ExtensionRegisteredEvent

ExtensionSettings - Class in org.hkijena.jipipe.extensions.settings

Settings related to how algorithms are executed

ExtensionSettings() - Constructor for class org.hkijena.jipipe.extensions.settings.ExtensionSettings

Creates a new instance

extract(JIPipeAlgorithm) - Method in class org.hkijena.jipipe.api.JIPipeProjectCache

Tries to extract data from the cache

extract(JIPipeAlgorithm, JIPipeProjectCache.State) - Method in class org.hkijena.jipipe.api.JIPipeProjectCache

Tries to extract data from the cache.

extract(JIPipeAlgorithm, String, String) - Method in class org.hkijena.jipipe.api.JIPipeProjectCache

Tries to extract data from the cache.

extract(Collection<JIPipeGraphNode>, boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Copies the selected algorithms into a new graph Connections between the nodes are kept

ExtractAndReplaceAnnotation - Class in org.hkijena.jipipe.extensions.annotation.algorithms

Generates annotations from filenames

ExtractAndReplaceAnnotation(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.ExtractAndReplaceAnnotation

New instance

ExtractAndReplaceAnnotation(ExtractAndReplaceAnnotation) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.ExtractAndReplaceAnnotation

Copies the algorithm

extractAnnotationsFromPython(PyDictionary) - Static method in class org.hkijena.jipipe.api.data.JIPipeAnnotation

Sets annotations from a Python dictionary

ExtractFileName - Class in org.hkijena.jipipe.extensions.filesystem.algorithms

Applies subfolder navigation to each input folder

ExtractFileName(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ExtractFileName

ExtractFileName(ExtractFileName) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ExtractFileName

Copies the algorithm

extractMergedAnnotations(String) - Static method in enum org.hkijena.jipipe.api.data.JIPipeAnnotationMergeStrategy

Extracts merged annotations

ExtractParent - Class in org.hkijena.jipipe.extensions.filesystem.algorithms

Applies subfolder navigation to each input folder

ExtractParent(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ExtractParent

ExtractParent(ExtractParent) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ExtractParent

Copies the algorithm

F

FactorizeColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting

Converts each entry into a factor

FactorizeColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.FactorizeColumnOperation

FancyTextField - Class in org.hkijena.jipipe.ui.components

A JXTextField with some fancy additions

FancyTextField(JLabel, String) - Constructor for class org.hkijena.jipipe.ui.components.FancyTextField

Creates a new instance

FastHoughSegmentation2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold

Segments using a Hough circle transform This code is based on https://github.com/closms/detectcircles

FastHoughSegmentation2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.FastHoughSegmentation2DAlgorithm

FastHoughSegmentation2DAlgorithm(FastHoughSegmentation2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.FastHoughSegmentation2DAlgorithm

FFT2DForwardTransform - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.fft

Applies a FFT forward transformation

FFT2DForwardTransform(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.fft.FFT2DForwardTransform

Creates a new instance

FFT2DForwardTransform(FFT2DForwardTransform) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.fft.FFT2DForwardTransform

Creates a copy

FFT2DInverseTransform - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.fft

Applies a FFT forward transformation

FFT2DInverseTransform(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.fft.FFT2DInverseTransform

Creates a new instance

FFT2DInverseTransform(FFT2DInverseTransform) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.fft.FFT2DInverseTransform

Creates a copy

FFT2DSwapQuadrants - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.fft

Applies a FFT forward transformation

FFT2DSwapQuadrants(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.fft.FFT2DSwapQuadrants

Creates a new instance

FFT2DSwapQuadrants(FFT2DSwapQuadrants) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.fft.FFT2DSwapQuadrants

Creates a copy

FileChooserSettings - Class in org.hkijena.jipipe.extensions.settings

Settings concerning file dialogs

FileChooserSettings() - Constructor for class org.hkijena.jipipe.extensions.settings.FileChooserSettings

FileData - Class in org.hkijena.jipipe.extensions.filesystem.dataypes

Data containing a file

FileData(Path) - Constructor for class org.hkijena.jipipe.extensions.filesystem.dataypes.FileData

Initializes file data from a file

FileDataSource - Class in org.hkijena.jipipe.extensions.filesystem.datasources

Provides an input file

FileDataSource(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.datasources.FileDataSource

Initializes the algorithm

FileDataSource(FileDataSource) - Constructor for class org.hkijena.jipipe.extensions.filesystem.datasources.FileDataSource

Copies the algorithm

FileListDataSource - Class in org.hkijena.jipipe.extensions.filesystem.datasources

Provides an input file

FileListDataSource(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.datasources.FileListDataSource

Initializes the algorithm

FileListDataSource(FileListDataSource) - Constructor for class org.hkijena.jipipe.extensions.filesystem.datasources.FileListDataSource

Copies the algorithm

FileParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.primitives

Editor for a File parameter

FileParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.FileParameterEditorUI

FilePathParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.primitives

Editor for a Path parameter

FilePathParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.FilePathParameterEditorUI

FilePathParameterSettings - Annotation Type in org.hkijena.jipipe.extensions.parameters.primitives

Attached to the getter or setter of Path parameter to setup the GUI

FilesystemDataSlotPreviewUI - Class in org.hkijena.jipipe.extensions.filesystem.resultanalysis

Renders filesystem data as table cell

FilesystemDataSlotPreviewUI(JTable) - Constructor for class org.hkijena.jipipe.extensions.filesystem.resultanalysis.FilesystemDataSlotPreviewUI

Creates a new renderer

FilesystemDataSlotRowUI - Class in org.hkijena.jipipe.extensions.filesystem.resultanalysis

Shows filesystem data results

FilesystemDataSlotRowUI(JIPipeProjectWorkbench, JIPipeDataSlot, JIPipeExportedDataTable.Row) - Constructor for class org.hkijena.jipipe.extensions.filesystem.resultanalysis.FilesystemDataSlotRowUI

Creates a new UI

FilesystemExtension - Class in org.hkijena.jipipe.extensions.filesystem

Extension that provides filesystem data types

FilesystemExtension() - Constructor for class org.hkijena.jipipe.extensions.filesystem.FilesystemExtension

FileSystemNodeTypeCategory - Class in org.hkijena.jipipe.api.nodes.categories

FileSystemNodeTypeCategory() - Constructor for class org.hkijena.jipipe.api.nodes.categories.FileSystemNodeTypeCategory

FileTableModel - Class in org.hkijena.jipipe.ui.ijupdater

Copy of FileTable.FileTableModel for usage in JIPipe

FileTableModel(FilesCollection) - Constructor for class org.hkijena.jipipe.ui.ijupdater.FileTableModel

FileTableModelFilter - Class in org.hkijena.jipipe.ui.ijupdater

FileTableModelFilter(SearchTextField, ViewOptions.Option) - Constructor for class org.hkijena.jipipe.ui.ijupdater.FileTableModelFilter

fileToRow - Variable in class org.hkijena.jipipe.ui.ijupdater.FileTableModel

FILL_COLOR - Static variable in class org.hkijena.jipipe.api.nodes.categories.AnnotationsNodeTypeCategory

FILL_COLOR - Static variable in class org.hkijena.jipipe.api.nodes.categories.DataSourceNodeTypeCategory

FILL_COLOR - Static variable in class org.hkijena.jipipe.api.nodes.categories.FileSystemNodeTypeCategory

FILL_COLOR - Static variable in class org.hkijena.jipipe.api.nodes.categories.ImagesNodeTypeCategory

FILL_COLOR - Static variable in class org.hkijena.jipipe.api.nodes.categories.MiscellaneousNodeTypeCategory

FILL_COLOR - Static variable in class org.hkijena.jipipe.api.nodes.categories.RoiNodeTypeCategory

FILL_COLOR - Static variable in class org.hkijena.jipipe.api.nodes.categories.TableNodeTypeCategory

FilterAndMergeRoiByStatisticsScriptAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

Wrapper around RoiManager

FilterAndMergeRoiByStatisticsScriptAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterAndMergeRoiByStatisticsScriptAlgorithm

Instantiates a new node type.

FilterAndMergeRoiByStatisticsScriptAlgorithm(FilterAndMergeRoiByStatisticsScriptAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterAndMergeRoiByStatisticsScriptAlgorithm

Instantiates a new node type.

FilterPaths - Class in org.hkijena.jipipe.extensions.filesystem.algorithms

Filters input files

FilterPaths(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.FilterPaths

Instantiates the algorithm

FilterPaths(FilterPaths) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.FilterPaths

Copies the algorithm

FilterRoiByStatisticsAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

Wrapper around RoiManager

FilterRoiByStatisticsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterRoiByStatisticsAlgorithm

Instantiates a new node type.

FilterRoiByStatisticsAlgorithm(FilterRoiByStatisticsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterRoiByStatisticsAlgorithm

Instantiates a new node type.

FilterRoiByStatisticsScriptAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

Wrapper around RoiManager

FilterRoiByStatisticsScriptAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterRoiByStatisticsScriptAlgorithm

Instantiates a new node type.

FilterRoiByStatisticsScriptAlgorithm(FilterRoiByStatisticsScriptAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterRoiByStatisticsScriptAlgorithm

Instantiates a new node type.

FilterTableAlgorithm - Class in org.hkijena.jipipe.extensions.tables.algorithms

Algorithm that integrates columns

FilterTableAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.FilterTableAlgorithm

Creates a new instance

FilterTableAlgorithm(FilterTableAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.FilterTableAlgorithm

Creates a copy

finalize() - Method in class org.hkijena.jipipe.ui.components.FormPanel

findCompartmentUIs(JIPipeProjectCompartment) - Method in class org.hkijena.jipipe.ui.JIPipeProjectWorkbench

Finds open JIPipeCompartmentUI tabs

findCompatibleTargetAlgorithms(JIPipeDataSlot) - Static method in class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmFinderUI

Finds all algorithms that fit to the slot according to the information in JIPipeNodeInfo

findExtensionById(String) - Method in class org.hkijena.jipipe.JIPipeDefaultRegistry

findExtensionById(String) - Method in interface org.hkijena.jipipe.JIPipeRegistry

Finds an extension by its ID

findFileByExtensionIn(Path, String) - Static method in class org.hkijena.jipipe.utils.PathUtils

Finds a file in the specified folder with given extension

findNodeGraphUIs(JIPipeWorkbench, NodeGroup) - Static method in class org.hkijena.jipipe.ui.grouping.JIPipeNodeGroupUI

Finds open JIPipeCompartmentUI tabs

FindParticles2D - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze

Converts a mask to ROI and ROI measurements

FindParticles2D(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D

FindParticles2D(FindParticles2D) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D

Copies the algorithm

findRangeBounds(CategoryDataset) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer

Returns the range of values from the specified dataset that the renderer will require to display all the data.

findRowsWithTraits(List<JIPipeAnnotation>) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

Finds rows that match the given traits

findRowWithTraits(List<JIPipeAnnotation>) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

Finds the row that matches the given traits

findTabNameFor(Component) - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane

Finds the tab title for the content

findUnsatisfiedDependencies(Set<JIPipeDependency>) - Static method in interface org.hkijena.jipipe.JIPipeDependency

Finds all dependencies that cannot be met

findWorkerOf(JIPipeRunnable) - Method in class org.hkijena.jipipe.ui.running.JIPipeRunnerQueue

Finds the worker associated to the JIPipeRunnable

fireChangedEvent(TableModelEvent) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Fires a TableModelEvent to all listeners

fireFileChanged(FileObject) - Method in class org.hkijena.jipipe.ui.ijupdater.FileTableModel

fireFileChanged(FileObject) - Method in class org.hkijena.jipipe.ui.ijupdater.ManagerUI

fireRowChanged(int) - Method in class org.hkijena.jipipe.ui.ijupdater.FileTableModel

fitRowHeights(JTable) - Static method in class org.hkijena.jipipe.utils.UIUtils

Fits the row heights of a JTable

flatten() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData

Makes all ROI visible on all stacks

FloatList - Class in org.hkijena.jipipe.extensions.parameters.primitives

A list of Float

FloatList() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.FloatList

Creates a new empty list

FloatList(FloatList) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.FloatList

Creates a copy

FloatParameterTypeInfo - Class in org.hkijena.jipipe.extensions.parameters.primitives

Info for Float

FloatParameterTypeInfo() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.FloatParameterTypeInfo

FloatPrimitiveParameterTypeInfo - Class in org.hkijena.jipipe.extensions.parameters.primitives

Info for Float

FloatPrimitiveParameterTypeInfo() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.FloatPrimitiveParameterTypeInfo

FloatRangeParameterGenerator - Class in org.hkijena.jipipe.extensions.parameters.generators

Generates Float

FloatRangeParameterGenerator(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.extensions.parameters.generators.FloatRangeParameterGenerator

Creates a new instance

FloorColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting

Applies a floor function

FloorColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.FloorColumnOperation

flush() - Method in interface org.hkijena.jipipe.api.data.JIPipeData

Called when the data is flushed Use this to help Java to clean up the memory.

flush(Path, boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

Saves the stored data to the provided storage path and sets data to null Warning: Ensure that depending input slots do not use this slot, anymore!

flush() - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageData

flush() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ImagePlusData

FolderData - Class in org.hkijena.jipipe.extensions.filesystem.dataypes

Data that stores a folder

FolderData(Path) - Constructor for class org.hkijena.jipipe.extensions.filesystem.dataypes.FolderData

Initializes file data from a file

FolderDataSource - Class in org.hkijena.jipipe.extensions.filesystem.datasources

Provides an input folder

FolderDataSource(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.datasources.FolderDataSource

Initializes the algorithm

FolderDataSource(FolderDataSource) - Constructor for class org.hkijena.jipipe.extensions.filesystem.datasources.FolderDataSource

Copies the algorithm

FolderListDataSource - Class in org.hkijena.jipipe.extensions.filesystem.datasources

Provides an input folder

FolderListDataSource(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.datasources.FolderListDataSource

Creates a new instance

FolderListDataSource(FolderListDataSource) - Constructor for class org.hkijena.jipipe.extensions.filesystem.datasources.FolderListDataSource

Copies the algorithm

forCategory(String) - Method in class org.hkijena.jipipe.api.JIPipeValidityReport

Returns a report for the specified category

FORCE_REFLECTION - Static variable in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree

Whether to force reflection

FORCE_TRAVERSE - Static variable in class org.hkijena.jipipe.ui.parameters.ParameterPanel

With this flag, the parameter collection is always traversed, even if the provided parameter collection was already traversed

forceCloseTab(DocumentTabPane.DocumentTab) - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane

Closes the tab.

forEachIndexedSlice(ImagePlus, BiConsumer<ImageProcessor, Integer>) - Static method in class org.hkijena.jipipe.extensions.imagejalgorithms.utils.ImageJUtils

Runs the function for each slice

forEachIndexedZTSlice(ImagePlus, BiConsumer<Map<Integer, ImageProcessor>, SliceIndex>) - Static method in class org.hkijena.jipipe.extensions.imagejalgorithms.utils.ImageJUtils

Runs the function for each Z and T slice.

forEachSlice(ImagePlus, Consumer<ImageProcessor>) - Static method in class org.hkijena.jipipe.extensions.imagejalgorithms.utils.ImageJUtils

Runs the function for each slice

formatDateTime(LocalDateTime) - Static method in class org.hkijena.jipipe.utils.StringUtils

A nice human-readable format

formatDuration(long) - Static method in class org.hkijena.jipipe.utils.StringUtils

Formats a duration in milliseconds to something readable

FormPanel - Class in org.hkijena.jipipe.ui.components

Organizes UI in a form layout with integrated help functionality, and grouping with conditional visibility

FormPanel(MarkdownDocument, int) - Constructor for class org.hkijena.jipipe.ui.components.FormPanel

Creates a new instance

FormPanel.GroupHeaderPanel - Class in org.hkijena.jipipe.ui.components

Panel that contains a group header

FormPanel.HoverHelpEvent - Class in org.hkijena.jipipe.ui.components

Event triggered when the user triggers a hover-help

forUpload - Variable in class org.hkijena.jipipe.ui.ijupdater.ResolveDependencies

FrangiVesselnessFeatures - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features

Applies CLAHE image enhancing

FrangiVesselnessFeatures(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.FrangiVesselnessFeatures

FrangiVesselnessFeatures(FrangiVesselnessFeatures) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.FrangiVesselnessFeatures

Copies the algorithm

FrangiVesselnessFeatures.SlicingMode - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features

Available ways how to handle higher-dimensional images

fromCSV(Path) - Static method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Loads a table from CSV

fromFile(Path) - Static method in class org.hkijena.jipipe.ui.components.MarkdownDocument

Loads a document from file

fromFolder(Path) - Static method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData

Loads data from a folder

fromJson(JsonNode) - Method in class org.hkijena.jipipe.api.compat.SingleImageJAlgorithmRun

Loads data from JSON

fromJson(JsonNode) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

fromJson(JsonNode) - Method in interface org.hkijena.jipipe.api.data.JIPipeSlotConfiguration

Loads this configuration from JSON

fromJson(JsonNode, JIPipeValidityReport) - Method in class org.hkijena.jipipe.api.JIPipeProject

Loads the project from JSON

fromJson(JsonNode, JIPipeValidityReport) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Loads this graph from JSON

fromJson(JsonNode, JIPipeValidityReport) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Loads this algorithm from JSON

fromJson(JsonNode) - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection

Loads the holder from JSON

fromJson(JsonNode) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData

Loads metadata from JSON

fromJson(JsonNode) - Method in interface org.hkijena.jipipe.utils.JsonDeserializable

Loads JSON data into the current object instance

fromPluginResource(String) - Static method in class org.hkijena.jipipe.ui.components.MarkdownDocument

Loads a document from the JIPipe plugin resources

fromPython(PyDictionary) - Static method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Converts a Python dictionary of column name to row data list to a results table

fromTableModel(TableModel) - Static method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Converts a table model into a string results table

fullRedraw() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

Removes all UIs and adds them back in

FunctionParameter<I,P,O> - Class in org.hkijena.jipipe.extensions.parameters.functions

A parameter that allows to model a function with an input, an output, and parameters.

FunctionParameter(Class<I>, Class<P>, Class<O>) - Constructor for class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameter

Creates a new instance

FunctionParameter(FunctionParameter<I, P, O>) - Constructor for class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameter

FunctionParameter.Deserializer<I,P,O> - Class in org.hkijena.jipipe.extensions.parameters.functions

Deserializes the parameter

FunctionParameter.Serializer - Class in org.hkijena.jipipe.extensions.parameters.functions

Serializes the parameter

FunctionParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.functions

Editor for FunctionParameter

FunctionParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterEditorUI

Creates new instance

FunctionParameterInputAccess<I,P,O> - Class in org.hkijena.jipipe.extensions.parameters.functions

Access to a FunctionParameter input

FunctionParameterInputAccess(JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterInputAccess

FunctionParameterOutputAccess<I,P,O> - Class in org.hkijena.jipipe.extensions.parameters.functions

Access to a FunctionParameter output

FunctionParameterOutputAccess(JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterOutputAccess

FunctionParameterParameterAccess<I,P,O> - Class in org.hkijena.jipipe.extensions.parameters.functions

Access to a FunctionParameter parameter

FunctionParameterParameterAccess(JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterParameterAccess

G

GaussianBlur2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur

Wrapper around GaussianBlur

GaussianBlur2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.GaussianBlur2DAlgorithm

Instantiates a new node type.

GaussianBlur2DAlgorithm(GaussianBlur2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.GaussianBlur2DAlgorithm

Instantiates a new node type.

GaussianBlur3DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur

Wrapper around GaussianBlur

GaussianBlur3DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.GaussianBlur3DAlgorithm

Instantiates a new node type.

GaussianBlur3DAlgorithm(GaussianBlur3DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.GaussianBlur3DAlgorithm

Instantiates a new node type.

GeneralUISettings - Class in org.hkijena.jipipe.extensions.settings

All settings for JIPipeGraphEditorUI

GeneralUISettings() - Constructor for class org.hkijena.jipipe.extensions.settings.GeneralUISettings

GenerateColumnAlgorithm - Class in org.hkijena.jipipe.extensions.tables.algorithms

Algorithm that adds or replaces a column by a generated value

GenerateColumnAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.GenerateColumnAlgorithm

Creates a new instance

GenerateColumnAlgorithm(GenerateColumnAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.GenerateColumnAlgorithm

Creates a copy

generateColumnParameter(JIPipeDynamicParameterCollection.UserParameterDefinition) - Static method in class org.hkijena.jipipe.extensions.tables.algorithms.GenerateColumnAlgorithm

Used for generating a new generator entry

generateColumnParameter(JIPipeDynamicParameterCollection.UserParameterDefinition) - Static method in class org.hkijena.jipipe.extensions.tables.algorithms.SetColumnAlgorithm

Used for generating a new generator entry

generateCompendiumFor(JIPipeNodeInfo) - Method in class org.hkijena.jipipe.ui.compendium.JIPipeAlgorithmCompendiumUI

generateCompendiumFor(T) - Method in class org.hkijena.jipipe.ui.compendium.JIPipeCompendiumUI

Generates the compendium page for the item

generateDataBatchesDryRun(Map<JIPipeDataBatchKey, Map<String, TIntSet>>) - Method in interface org.hkijena.jipipe.api.nodes.JIPipeDataBatchAlgorithm

Generates data batches for the groups.

generateDataBatchesDryRun(Map<JIPipeDataBatchKey, Map<String, TIntSet>>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm

generateDataBatchesDryRun(Map<JIPipeDataBatchKey, Map<String, TIntSet>>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm

GenerateDocumentationUtil - Class in org.hkijena.jipipe.extensions.clij2

GenerateDocumentationUtil() - Constructor for class org.hkijena.jipipe.extensions.clij2.GenerateDocumentationUtil

GeneratedParameters - Class in org.hkijena.jipipe.extensions.multiparameters.datasources

Encapsulates the generation of parameters

GeneratedParameters(JIPipeGraphNode) - Constructor for class org.hkijena.jipipe.extensions.multiparameters.datasources.GeneratedParameters

GeneratedParameters(GeneratedParameters) - Constructor for class org.hkijena.jipipe.extensions.multiparameters.datasources.GeneratedParameters

GenerateStructureElementAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.generate

Wrapper around ImageProcessor

GenerateStructureElementAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.generate.GenerateStructureElementAlgorithm

Instantiates a new node type.

GenerateStructureElementAlgorithm(GenerateStructureElementAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.generate.GenerateStructureElementAlgorithm

Instantiates a new node type.

generateTempDirectory(String) - Static method in class org.hkijena.jipipe.extensions.settings.RuntimeSettings

Generates a temporary directory

generateTempFile(String, String) - Static method in class org.hkijena.jipipe.extensions.settings.RuntimeSettings

Generates a temporary directory

generateWholeCompendium() - Method in class org.hkijena.jipipe.ui.compendium.JIPipeCompendiumUI

Generates a document that contains the whole compendium

get() - Method in class org.hkijena.jipipe.api.compat.ImageJDatatypeImporter

get(Class<T>) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccess

get() - Method in class org.hkijena.jipipe.api.parameters.JIPipeDummyParameterCollection

get(String) - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection

Returns the parameter with key

get(Class<T>) - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess

get(Class<T>) - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess

get(Class<T>) - Method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterAccess

Gets the parameter value

get(Class<T>) - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess

get(Class<U>) - Method in class org.hkijena.jipipe.extensions.parameters.collections.ListParameterItemParameterAccess

get(Class<T>) - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterInputAccess

get(Class<T>) - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterOutputAccess

get(Class<T>) - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterParameterAccess

get() - Method in class org.hkijena.jipipe.extensions.parameters.generators.NumberRangeParameterGenerator

get(Class<U>) - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameterContentAccess

get(Class<T>) - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterKeyAccess

get(Class<T>) - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterValueAccess

get(Class<T>) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTableCellAccess

get() - Method in class org.hkijena.jipipe.utils.InstantFuture

get(long, TimeUnit) - Method in class org.hkijena.jipipe.utils.InstantFuture

getA1() - Method in class org.hkijena.jipipe.ui.grapheditor.connections.RectangularLine

getAbsoluteFileName() - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FileDataSource

getAbsoluteFileNames() - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FileListDataSource

getAbsoluteFolderPath() - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FolderDataSource

getAbsoluteFolderPaths() - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FolderListDataSource

getAcceptedDataType() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

getAcceptedDataTypeId() - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable

getAction() - Method in class org.hkijena.jipipe.ui.events.AlgorithmUIActionRequestedEvent

getActions() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node

getAdapter() - Method in class org.hkijena.jipipe.api.compat.ImageJDatatypeImporter

getAdapterForImageJData(Class<?>) - Method in class org.hkijena.jipipe.api.registries.JIPipeImageJAdapterRegistry

Returns a matching adapter for an ImageJ data type

getAdapterForImageJData(Object) - Method in class org.hkijena.jipipe.api.registries.JIPipeImageJAdapterRegistry

Applies conversion from JIPipe to ImageJ data

getAdapterForJIPipeData(Class<? extends JIPipeData>) - Method in class org.hkijena.jipipe.api.registries.JIPipeImageJAdapterRegistry

Returns a matching adapter for a JIPipe data type

getAdapterForJIPipeData(JIPipeData) - Method in class org.hkijena.jipipe.api.registries.JIPipeImageJAdapterRegistry

Gets a matching adapter for the provided data

getAddableAlgorithms() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

getAdditionalMetadata() - Method in class org.hkijena.jipipe.api.JIPipeProject

getAffiliations() - Method in class org.hkijena.jipipe.api.JIPipeAuthorMetadata

getAfterSlotConfiguration() - Method in class org.hkijena.jipipe.api.history.SlotConfigurationHistorySnapshot

getAlgorithm() - Method in class org.hkijena.jipipe.api.compat.SingleImageJAlgorithmRun

getAlgorithm() - Method in class org.hkijena.jipipe.api.events.NodeSlotsChangedEvent

getAlgorithm() - Method in class org.hkijena.jipipe.extensions.parameters.collections.SlotMapParameterCollection

getAlgorithm() - Method in class org.hkijena.jipipe.ui.compat.RunSingleAlgorithmDialog

getAlgorithm() - Method in class org.hkijena.jipipe.ui.extensionbuilder.JIPipeJsonAlgorithmExporterSingleSelectionPanelUI

getAlgorithm() - Method in class org.hkijena.jipipe.ui.extensionbuilder.JIPipeJsonExtensionSingleAlgorithmSelectionPanelUI

getAlgorithm() - Method in class org.hkijena.jipipe.ui.grapheditor.settings.JIPipeSingleAlgorithmSelectionPanelUI

getAlgorithmBackup(JIPipeGraphNode) - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestbenchSnapshot

getAlgorithmCompartment(JIPipeProjectWorkbench, JIPipeDataSlot) - Static method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultDataSlotPreviewUI

Returns the compartment name of the algorithm that generated the data

getAlgorithmCompartment() - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultDataSlotRowUI

Returns the compartment name of the algorithm that generated the data

getAlgorithmDocumentation(JIPipeNodeInfo) - Static method in class org.hkijena.jipipe.utils.TooltipUtils

getAlgorithmGraph() - Method in class org.hkijena.jipipe.api.events.GraphChangedEvent

getAlgorithmGraph() - Method in class org.hkijena.jipipe.api.JIPipeGraphRunner

getAlgorithmGraph() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

getAlgorithmId() - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable

getAlgorithmId() - Method in class org.hkijena.jipipe.ui.compat.RunSingleAlgorithmDialog

getAlgorithmInstance() - Method in class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterAlgorithm

getAlgorithmInstance() - Method in class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterAlgorithmSlotConfiguration

getAlgorithmName(JIPipeDataSlot) - Static method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultDataSlotPreviewUI

Returns the name of the algorithm that generated the data

getAlgorithmName() - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultDataSlotRowUI

Returns the name of the algorithm that generated the data

getAlgorithmParametersJson() - Method in class org.hkijena.jipipe.ui.compat.RunSingleAlgorithmDialog

getAlgorithmsWithCompartment(String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Returns the algorithms within the specified compartment ID.

getAlgorithmsWithExternalInput() - Method in class org.hkijena.jipipe.api.JIPipeGraphRunner

getAlgorithmTooltip(JIPipeNodeInfo) - Static method in class org.hkijena.jipipe.utils.TooltipUtils

Creates a tooltip for an algorithm.

getAlgorithmTooltip(JIPipeNodeInfo, boolean) - Static method in class org.hkijena.jipipe.utils.TooltipUtils

Creates a tooltip for an algorithm

getAllChildParameters(Object) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree

Returns all child parameters of the entry If the entry is an JIPipeParameterAccess, it is returned.

getAllDescriptions() - Static method in enum org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.Measurement

getAllowedInputSlotTypes() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

getAllowedInputSlotTypes() - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration

getAllowedOutputSlotTypes() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

getAllowedOutputSlotTypes() - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration

getAllowedTypes() - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection

getAllowedValues() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DynamicEnumParameter

getAllowedValues() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DynamicSetParameter

getAllPredecessors(Graph<V, E>, V) - Static method in class org.hkijena.jipipe.utils.GraphUtils

Gets all parent nodes of the vertex

getAllPredecessors(V) - Method in class org.hkijena.jipipe.utils.WeakPredecessorInspector

getAllSuccessors(Graph<V, E>, V) - Static method in class org.hkijena.jipipe.utils.GraphUtils

Gets all successors of the vertex

getAlpha() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.MeijeringVesselness2DFeatures

getAnchor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm

getAnchor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformEqualCanvasSize2DAlgorithm

getAnchor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformExpandCanvas2DAlgorithm

getAnchor() - Method in class org.hkijena.jipipe.extensions.parameters.roi.Margin

getAnnotationColumn() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.AnnotationToPath

getAnnotationColumnChannelIndex() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SplitChannelsAlgorithm

getAnnotationColumnName(String) - Static method in class org.hkijena.jipipe.extensions.tables.datatypes.AnnotationTableData

Returns the annotation column name of the annotation type

getAnnotationColumns() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

getAnnotationColumns() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.AnnotationTableData

Returns all columns that reference valid annotation types

getAnnotationColumnSlotName() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SplitChannelsAlgorithm

getAnnotationMap() - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess

Mutable access to the annotations

getAnnotationMergeStrategy() - Method in class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm.DataBatchGenerationSettings

getAnnotationMergeStrategy() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm.DataBatchGenerationSettings

getAnnotationMergeStrategy() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateAll

getAnnotationMergeStrategy() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateWithDataString

getAnnotationMergeStrategy() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.ExtractAndReplaceAnnotation

getAnnotationMergeStrategy() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.SimplePathAnnotationGenerator

getAnnotationOfType(Class<T>) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccess

getAnnotationOfType(String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeDataBatch

Returns an existing annotation Only the exact type is used for searching

getAnnotationOfType(String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch

Returns an existing annotation Only the exact type is used for searching

getAnnotationOfType(Class<T>) - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess

getAnnotationOfType(Class<T>) - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess

getAnnotationOfType(Class<T>) - Method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterAccess

Finds an annotation for this parameter

getAnnotationOfType(Class<T>) - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess

getAnnotationOfType(Class<T>) - Method in class org.hkijena.jipipe.extensions.parameters.collections.ListParameterItemParameterAccess

getAnnotationOfType(Class<T>) - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterInputAccess

getAnnotationOfType(Class<T>) - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterOutputAccess

getAnnotationOfType(Class<T>) - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterParameterAccess

getAnnotationOfType(Class<U>) - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameterContentAccess

getAnnotationOfType(Class<T>) - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterKeyAccess

getAnnotationOfType(Class<T>) - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterValueAccess

getAnnotationOfType(Class<T>) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTableCellAccess

getAnnotationOr(int, String, JIPipeAnnotation) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

Returns the annotation of specified type or the alternative value.

getAnnotationPrefix() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.AddAnnotationColumnsAlgorithm

getAnnotations(int) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

Gets the list of annotations for a specific data row

getAnnotations() - Method in class org.hkijena.jipipe.api.nodes.JIPipeDataBatch

Gets the list of annotations.

getAnnotations() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch

Gets the list of annotations

getAnnotations() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateAll

getAnnotations(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.AnnotationTableData

Gets all annotations at the specified row

getAnnotationType() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.SplitByAnnotation

getAnnotationType() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D

getAnnotationType() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackSplitterAlgorithm

getAnnotationType() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackTo2DAlgorithm

getAnnotationTypeFromColumnName(String) - Static method in class org.hkijena.jipipe.extensions.tables.datatypes.AnnotationTableData

Returns the trait info from a column name.

getAnnotationTypes() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.RemoveAnnotationByType

getAppendDataTypeMetadataKey() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ExportDataByParameter

getArtifactPaint() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer

Returns the paint used to color the median and average markers.

getAuthors() - Method in class org.hkijena.jipipe.api.JIPipeMetadata

getAuthors() - Method in class org.hkijena.jipipe.extensions.JIPipePrepackagedDefaultJavaExtension

getAuthors() - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension

getAutoLayout() - Method in class org.hkijena.jipipe.extensions.settings.GraphEditorUISettings

getAutoThresholding() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.BrightSpotsSegmentation2DAlgorithm

getAutoThresholding() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HessianSegmentation2DAlgorithm

getAutoThresholding() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.InternalGradientSegmentation2DAlgorithm

getAvailableAlgorithmIcons() - Static method in class org.hkijena.jipipe.extensions.parameters.editors.JIPipeAlgorithmIconRefParameterEditorUI

getAvailableData() - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotBuilderUI

Contains single-column series that will be later spliced together depending on the user's settings

getAvailableParameters() - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

Gets the available parameters in the graph

getAvailableParameters() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterCollectionVisibilities

An optional reference of all available parameters.

getAvailableSources(JIPipeDataSlot, boolean, boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Returns all available sources for an input slot.

getAvailableTargets(JIPipeDataSlot, boolean, boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Returns all available target for an output slot Does not check for cycles.

getB1() - Method in class org.hkijena.jipipe.ui.grapheditor.connections.RectangularLine

getBackgroundColor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm

getBackgroundColor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformEqualCanvasSize2DAlgorithm

getBackgroundColor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformExpandCanvas2DAlgorithm

getBackgroundImage() - Method in class org.hkijena.jipipe.ui.components.BackgroundPanel

getBackgroundType() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background.RollingBallBackgroundEstimator2DAlgorithm

getBackupGraph() - Method in class org.hkijena.jipipe.api.history.GraphChangedHistorySnapshot

getBackupList() - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBench

getBandwidth() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm

getBaselineOffset() - Method in class org.hkijena.jipipe.utils.CustomTabbedPaneUI

getBaseName() - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.TemporaryFolderDataSource

getBenchedAlgorithm() - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBench

getBetweenColumnOperation() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.FilterTableAlgorithm

getBetweenMeasurementOperation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterRoiByStatisticsAlgorithm

getBinAxisLabel() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.HistogramPlotData

getBins() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast.CLAHEContrastEnhancer

getBins() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.HistogramPlotData

getBioFormatsCompression() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesSettings

getBitDepthAnnotation() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePropertiesToAnnotationAlgorithm

getBlack() - Method in class org.hkijena.jipipe.utils.ModernMetalTheme

Returns the black color.

getBlockRadius() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast.CLAHEContrastEnhancer

getBlurSigmaX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GaussianBlur2d

getBlurSigmaX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GaussianBlur3d

getBlurSigmaY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GaussianBlur2d

getBlurSigmaY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GaussianBlur3d

getBlurSigmaZ() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GaussianBlur3d

getBorderColor() - Method in class org.hkijena.jipipe.api.compartments.algorithms.CompartmentNodeTypeCategory

getBorderColor() - Method in class org.hkijena.jipipe.api.nodes.categories.AnnotationsNodeTypeCategory

getBorderColor() - Method in class org.hkijena.jipipe.api.nodes.categories.DataSourceNodeTypeCategory

getBorderColor() - Method in class org.hkijena.jipipe.api.nodes.categories.FileSystemNodeTypeCategory

getBorderColor() - Method in class org.hkijena.jipipe.api.nodes.categories.ImagesNodeTypeCategory

getBorderColor() - Method in class org.hkijena.jipipe.api.nodes.categories.InternalNodeTypeCategory

getBorderColor() - Method in class org.hkijena.jipipe.api.nodes.categories.MiscellaneousNodeTypeCategory

getBorderColor() - Method in class org.hkijena.jipipe.api.nodes.categories.RoiNodeTypeCategory

getBorderColor() - Method in class org.hkijena.jipipe.api.nodes.categories.TableNodeTypeCategory

getBorderColor() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeTypeCategory

The border color for algorithm nodes

getBorderColor() - Method in class org.hkijena.jipipe.extensions.parameters.colors.ColorMapIcon

getBorderColor() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI

getBorderColorFor(JIPipeNodeInfo) - Static method in class org.hkijena.jipipe.utils.UIUtils

Returns a border color for JIPipeNodeInfo

getBorderDefinition() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RemoveBorderRoisAlgorithm

getBorderInsets(Component, Insets) - Method in class org.hkijena.jipipe.utils.RoundedLineBorder

getBorderWidth() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.MontageToStackAlgorithm

getBorderWidth() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm

getBottom() - Method in class org.hkijena.jipipe.extensions.parameters.roi.Margin

getBottomY() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI

Get the Y location of the bottom part

getBounds() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData

Returns the bounds of area described by the Roi

getById(String) - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry

Returns the data class with specified ID

getC() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.SliceIndex

getCache() - Method in class org.hkijena.jipipe.api.JIPipeProject

getCache() - Method in class org.hkijena.jipipe.api.JIPipeProjectCache.ModifiedEvent

getCachedDataTypes() - Method in class org.hkijena.jipipe.api.JIPipeProjectCache

Returns statistics on how many rows of given data type have been cached

getCachedRowNumber() - Method in class org.hkijena.jipipe.api.JIPipeProjectCache

Returns the number of cached data rows

getCalibrationMode() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.DisplayRangeCalibrationAlgorithm

getCanvas() - Method in interface org.hkijena.jipipe.ui.grapheditor.JIPipeGraphDragAndDropBehavior

Returns the canvas the contains the algorithm nodes

getCanvas() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeStandardDragAndDropBehavior

getCanvasUI() - Method in class org.hkijena.jipipe.ui.events.AlgorithmSelectionChangedEvent

getCanvasUI() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

getCategories() - Method in class org.hkijena.jipipe.api.JIPipeValidityReport

getCategory() - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

getCategory() - Method in class org.hkijena.jipipe.api.nodes.JIPipeEmptyNodeInfo

getCategory() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Gets the algorithm category

getCategory() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMutableNodeInfo

getCategory() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeInfo

Returns the algorithm category

getCategory(String) - Method in class org.hkijena.jipipe.api.registries.JIPipeNodeRegistry

getCategory() - Method in class org.hkijena.jipipe.api.registries.JIPipeSettingsRegistry.Sheet

getCategory() - Method in class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterNodeInfo

getCategoryAxisLabel() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CategoryPlotData

getCategoryIcon() - Method in class org.hkijena.jipipe.api.registries.JIPipeSettingsRegistry.Sheet

getCategoryOf(Class<? extends JIPipeGraphNode>) - Static method in class org.hkijena.jipipe.api.nodes.JIPipeJavaNodeInfo

Returns the category of an algorithm

getCategoryParameter() - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

getCellRendererFor(Class<? extends JIPipeData>, JTable) - Method in class org.hkijena.jipipe.ui.registries.JIPipeUIDatatypeRegistry

Returns a cell renderer for dataslot result table

getCenterX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsOnSurface

getCenterX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsSubSurface

getCenterX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceRadial

getCenterY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsOnSurface

getCenterY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsSubSurface

getCenterY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceRadial

getCenterZ() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsOnSurface

getCenterZ() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsSubSurface

getChangedGraph() - Method in class org.hkijena.jipipe.api.history.GraphChangedHistorySnapshot

getChannelColorAssignment() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.MergeChannelsAlgorithm

getChannelReordering() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.ArrangeChannelsAlgorithm

getChannelSizeAnnotation() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePropertiesToAnnotationAlgorithm

getChannelToSlotAssignment() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SplitChannelsAlgorithm

getChart() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.BarBoxAndWhiskerCategoryPlotData

getChart() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.BarCategoryPlotData

getChart() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.BarStatisticalCategoryPlotData

getChart() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.HistogramPlotData

getChart() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.LineCategoryPlotData

getChart() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.LineStatisticalCategoryPlotData

getChart() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.LineXYPlotData

getChart() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.Pie2DPlotData

getChart() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.Pie3DPlotData

getChart() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData

getChart() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.ScatterXYPlotData

getChart() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.StackedBarCategoryPlotData

getChartPanel() - Method in class org.hkijena.jipipe.ui.components.PlotReader

getChildParameterCollections() - Method in class org.hkijena.jipipe.api.grouping.JsonAlgorithm

getChildParameterCollections() - Method in class org.hkijena.jipipe.api.grouping.NodeGroup

getChildParameterCollections() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccessGroupList

getChildParameterCollections() - Method in interface org.hkijena.jipipe.api.parameters.JIPipeCustomParameterCollection

Returns all sub-parameter collections

getChildParameterCollections() - Method in class org.hkijena.jipipe.ui.settings.JIPipeProjectInfoParameters

getChildren() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node

getCitation() - Method in class org.hkijena.jipipe.api.JIPipeMetadata

getCitation() - Method in class org.hkijena.jipipe.extensions.JIPipePrepackagedDefaultJavaExtension

getCitation() - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension

getCleanedMenuPath(String) - Static method in class org.hkijena.jipipe.utils.StringUtils

Cleans a menu path string

getCloseMode() - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane.DocumentTab

getCode() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.ModifyAnnotationScript

getCode() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.SplitByAnnotationScript

getCode() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.MacroWrapperAlgorithm

getCode() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterAndMergeRoiByStatisticsScriptAlgorithm

getCode() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterRoiByStatisticsScriptAlgorithm

getCode() - Method in class org.hkijena.jipipe.extensions.parameters.scripts.ScriptParameter

getCode() - Method in class org.hkijena.jipipe.extensions.python.IteratingPythonScriptAlgorithm

getCode() - Method in class org.hkijena.jipipe.extensions.python.MergingPythonScriptAlgorithm

getCode() - Method in class org.hkijena.jipipe.extensions.python.ParameterSlotPythonScriptAlgorithm

getCode() - Method in class org.hkijena.jipipe.extensions.python.PythonScriptAlgorithm

getCode() - Method in class org.hkijena.jipipe.extensions.python.SimpleIteratingPythonScriptAlgorithm

getCode() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ModifyAndMergeTablesScript

getCode() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ModifyTablesScript

getCode() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.TablesFromScript

getCollection() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node

getColor() - Method in class org.hkijena.jipipe.ui.components.MonochromeColorIcon

getColorForGap(int, int, int) - Method in class org.hkijena.jipipe.utils.CustomTabbedPaneUI

getColorMap() - Method in class org.hkijena.jipipe.extensions.parameters.colors.ColorMapIcon

getColorMode() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter

getColumn() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.AnnotationTableToPaths

getColumn(int) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable

Returns the column definition of given index

getColumn() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData.Index

getColumnAsDouble(String) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotDataSeries

Gets a copy of a column by name

getColumnAssignments() - Method in class org.hkijena.jipipe.extensions.plots.PlotGeneratorAlgorithm

getColumnAssignments() - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotSeriesBuilder

getColumnAsString(String) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotDataSeries

Gets a copy of a column by name

getColumnClass(int) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

getColumnClass(int) - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable

getColumnClass(int) - Method in class org.hkijena.jipipe.api.data.JIPipeMergedDataSlotTable

getColumnClass(int) - Method in class org.hkijena.jipipe.api.data.JIPipeMergedExportedDataTable

getColumnClass(int) - Method in class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2D

getColumnClass(int) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable

getColumnClass(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

getColumnClass(int) - Method in class org.hkijena.jipipe.ui.batchassistant.DataSlotTableUI.WrapperTableModel

getColumnClass(int) - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheDataSlotTableUI.WrapperTableModel

getColumnClass(int) - Method in class org.hkijena.jipipe.ui.ijupdater.FileTableModel

getColumnCopy(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Returns a column as vector.

getColumnCount() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

getColumnCount() - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable

getColumnCount() - Method in class org.hkijena.jipipe.api.data.JIPipeMergedDataSlotTable

getColumnCount() - Method in class org.hkijena.jipipe.api.data.JIPipeMergedExportedDataTable

getColumnCount() - Method in class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2D

getColumnCount() - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable

getColumnCount() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

getColumnCount() - Method in class org.hkijena.jipipe.ui.batchassistant.DataSlotTableUI.WrapperTableModel

getColumnCount() - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheDataSlotTableUI.WrapperTableModel

getColumnCount() - Method in class org.hkijena.jipipe.ui.ijupdater.FileTableModel

getColumnHeight() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm

getColumnIdentifiers(DefaultTableModel) - Static method in class org.hkijena.jipipe.utils.TableUtils

Gets the table's column names

getColumnIndex(String) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Returns the index of an existing column

getColumnName(int) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

getColumnName(int) - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable

getColumnName(int) - Method in class org.hkijena.jipipe.api.data.JIPipeMergedDataSlotTable

getColumnName(int) - Method in class org.hkijena.jipipe.api.data.JIPipeMergedExportedDataTable

getColumnName() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GenerateParametricImageFromResultsTableColumn

getColumnName() - Method in enum org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.MeasurementColumn

getColumnName(int) - Method in class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2D

getColumnName(int) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable

getColumnName(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

getColumnName(int) - Method in class org.hkijena.jipipe.ui.batchassistant.DataSlotTableUI.WrapperTableModel

getColumnName(int) - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheDataSlotTableUI.WrapperTableModel

getColumnName(int) - Method in class org.hkijena.jipipe.ui.ijupdater.FileTableModel

getColumnNames() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

getColumnOperationById(String) - Method in class org.hkijena.jipipe.api.registries.JIPipeTableRegistry

Returns an operation by ID

getColumnRadius() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToCircularROIAlgorithm

getColumnReference(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Returns a column as vector.

getColumns() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.MontageToStackAlgorithm

getColumns() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm

getColumns() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.GenerateColumnAlgorithm

getColumns() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.SetColumnAlgorithm

getColumns() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.SplitTableByColumnsAlgorithm

getColumnSource() - Method in class org.hkijena.jipipe.extensions.tables.parameters.TableColumnSourceParameter

getColumnWidth() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm

getColumnX1() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToCircularROIAlgorithm

getColumnX1() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm

getColumnX2() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm

getColumnY1() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToCircularROIAlgorithm

getColumnY1() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm

getColumnY2() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm

getComboBox() - Method in class org.hkijena.jipipe.ui.components.SearchBox

getCompartment() - Method in class org.hkijena.jipipe.api.events.CompartmentAddedEvent

getCompartment() - Method in class org.hkijena.jipipe.api.events.CompartmentRemovedEvent

getCompartment() - Method in class org.hkijena.jipipe.api.events.CompartmentRenamedEvent

getCompartment() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Returns the compartment the algorithm is located within

getCompartment() - Method in class org.hkijena.jipipe.ui.compartments.JIPipeCompartmentUI

getCompartment() - Method in class org.hkijena.jipipe.ui.compartments.JIPipeSingleCompartmentSelectionPanelUI

getCompartment() - Method in class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmFinderSlotUI

Returns the compartment ID

getCompartment() - Method in class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmFinderUI

Returns the graph compartment

getCompartment() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeDataSlotUI

getCompartment() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

getCompartment() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

getCompartmentGraph() - Method in class org.hkijena.jipipe.api.JIPipeProject

getCompartmentInstance() - Method in class org.hkijena.jipipe.api.history.AddCompartmentGraphHistorySnapshot

getCompartmentInstance() - Method in class org.hkijena.jipipe.api.history.DeleteCompartmentGraphHistorySnapshot

getCompartmentInstance() - Method in class org.hkijena.jipipe.api.history.ImportCompartmentGraphHistorySnapshot

getCompartmentOf(JIPipeGraphNode) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Returns the graph compartment ID of the algorithm This graph must contain the algorithm

getCompartments() - Method in class org.hkijena.jipipe.api.JIPipeProject

getCompatibleTypes() - Static method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.MacroWrapperAlgorithm

Returns all types compatible with the MacroWrapperAlgorithm

getCompression() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMEExporterSettings

getCompression() - Method in enum org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMETIFFCompression

getConfiguration() - Method in class org.hkijena.jipipe.api.events.SlotsChangedEvent

getConfiguration() - Method in class org.hkijena.jipipe.api.JIPipeRun

getConfirmIcon() - Method in class org.hkijena.jipipe.ui.components.ConfirmingButton

getConflictWarnings() - Method in class org.hkijena.jipipe.ui.ijupdater.RefreshRepositoryRun

getConstant() - Method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.LocalMaxima2DAlgorithm.OutputType

getContent() - Method in class org.hkijena.jipipe.api.events.ExtensionContentAddedEvent

getContent() - Method in class org.hkijena.jipipe.api.events.ExtensionContentRemovedEvent

getContent() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceGroup

getContent() - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameter

getContent() - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane.DocumentTab

getContent() - Method in class org.hkijena.jipipe.ui.components.MarkdownReader

getContentClass() - Method in class org.hkijena.jipipe.extensions.parameters.collections.ListParameter

getContentClass() - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameter

getContentPanel() - Method in class org.hkijena.jipipe.ui.components.FormPanel

getContents() - Method in class org.hkijena.jipipe.api.grouping.NodeGroup

getContext() - Method in class org.hkijena.jipipe.JIPipeGUICommand

getContext() - Method in class org.hkijena.jipipe.ui.compat.RunSingleAlgorithmDialog

getContext() - Method in class org.hkijena.jipipe.ui.components.SplashScreen

getContext() - Method in class org.hkijena.jipipe.ui.ijupdater.MissingUpdateSiteResolver

getContext() - Method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWindow

getContext() - Method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWorkbench

getContext() - Method in class org.hkijena.jipipe.ui.JIPipeProjectWindow

getContext() - Method in class org.hkijena.jipipe.ui.JIPipeProjectWorkbench

getContext() - Method in interface org.hkijena.jipipe.ui.JIPipeWorkbench

getContext() - Method in class org.hkijena.jipipe.ui.parameters.JIPipeParameterEditorUI

getContext() - Method in class org.hkijena.jipipe.ui.parameters.ParameterPanel

getContextActions() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

getContrastEnhancer() - Method in class org.hkijena.jipipe.extensions.clij2.CLIJSettings

getContrastEnhancer() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.InternalGradientSegmentation2DAlgorithm

getControlSize() - Method in class org.hkijena.jipipe.utils.CheckBoxIcon

getControlTextColor() - Method in class org.hkijena.jipipe.utils.ModernMetalTheme

Returns the control text color.

getConverter() - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry.DataConverterEdge

The converter if the data types cannot be trivially converted

getCounterAnnotation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackMergerAlgorithm

getCropRegions() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter

getCurrentConnectionDragSource() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

getCurrentConnectionDragTarget() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

getCurrentContent() - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane

getCurrentHighlightedForDisconnect() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

getCurrentlySelectedValue() - Method in class org.hkijena.jipipe.ui.extensionbuilder.JIPipeJsonExtensionContentListUI

getCurrentPlot() - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotBuilderUI

getCurrentRun() - Method in class org.hkijena.jipipe.ui.running.JIPipeRunnerQueue

getCustomColumns() - Method in class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm.DataBatchGenerationSettings

getCustomColumns() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm.DataBatchGenerationSettings

getCustomDescription() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReference

getCustomDescription() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Returns the custom description that is set by the user

getCustomMax() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.DisplayRangeCalibrationAlgorithm

getCustomMin() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.DisplayRangeCalibrationAlgorithm

getCustomName() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo

getCustomName() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReference

getData(int, Class<T>) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

Gets the data stored in a specific row

getData() - Method in class org.hkijena.jipipe.extensions.strings.StringData

getData() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.DoubleArrayTableColumn

getData() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.StringArrayTableColumn

getData() - Method in class org.hkijena.jipipe.utils.RankedData

getDataAsDouble(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.DoubleArrayTableColumn

getDataAsDouble(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.RowIndexTableColumn

getDataAsDouble(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.StringArrayTableColumn

getDataAsDouble(int) - Method in interface org.hkijena.jipipe.extensions.tables.datatypes.TableColumn

Returns as many data entries as rows

getDataAsDouble(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ZeroTableColumn

getDataAsDouble(int) - Method in class org.hkijena.jipipe.extensions.tables.TableColumnReference

getDataAsString(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.DoubleArrayTableColumn

getDataAsString(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.RowIndexTableColumn

getDataAsString(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.StringArrayTableColumn

getDataAsString(int) - Method in interface org.hkijena.jipipe.extensions.tables.datatypes.TableColumn

Returns as many data entries as rows

getDataAsString(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ZeroTableColumn

getDataAsString(int) - Method in class org.hkijena.jipipe.extensions.tables.TableColumnReference

getDataBatchGenerationSettings() - Method in class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm

getDataBatchGenerationSettings() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm

getDataClass() - Method in class org.hkijena.jipipe.api.data.JIPipeDataInfo

getDataClass() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo

getDataClass() - Method in class org.hkijena.jipipe.extensions.parameters.collections.SlotMapParameterCollection

getDataInfo() - Method in class org.hkijena.jipipe.ui.components.JIPipeDataTypePicker.DataTypeDeselectedEvent

getDataInfo() - Method in class org.hkijena.jipipe.ui.components.JIPipeDataTypePicker.DataTypeSelectedEvent

getDataInputSlots() - Method in class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterAlgorithm

getDataSetMatching() - Method in class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm.DataBatchGenerationSettings

getDataSetMatching() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm.DataBatchGenerationSettings

getDataSlot() - Method in class org.hkijena.jipipe.ui.cache.JIPipeDataSlotCacheManagerUI

getDataSourcesFor(Class<? extends T>) - Method in class org.hkijena.jipipe.api.registries.JIPipeNodeRegistry

Returns data source algorithms that can generate the specified data type

getDataTooltip(JIPipeDataInfo) - Static method in class org.hkijena.jipipe.utils.TooltipUtils

Creates a tooltip for data

getDataTypePicker() - Method in class org.hkijena.jipipe.ui.components.JIPipeDataTypePicker.DataTypeDeselectedEvent

getDataTypePicker() - Method in class org.hkijena.jipipe.ui.components.JIPipeDataTypePicker.DataTypeSelectedEvent

getDataTypePicker() - Method in class org.hkijena.jipipe.ui.components.JIPipeDataTypePicker.SelectedDataTypesChangedEvent

getDatatypeRegistry() - Method in class org.hkijena.jipipe.JIPipeDefaultRegistry

getDatatypeRegistry() - Method in interface org.hkijena.jipipe.JIPipeRegistry

getDataTypesByMenuPaths() - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry

Gets the registered data types, grouped by their menu paths

getDeactivatedAlgorithms() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Gets all algorithms and all dependent algorithms that are missing inputs or are deactivated by the user

getDeactivatedAlgorithms(Set<JIPipeGraphNode>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Gets all algorithms and all dependent algorithms that are missing inputs or are deactivated by the user

getDeclaredBy(JIPipeDependency) - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry

Returns all data infos added by the dependency

getDeclaredBy(JIPipeDependency) - Method in class org.hkijena.jipipe.api.registries.JIPipeNodeRegistry

Gets all algorithms declared by the dependency

getDefaultParameterCollectionDescription() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccessGroup

getDefaultParameterCollectionDescription() - Method in interface org.hkijena.jipipe.api.parameters.JIPipeNamedParameterCollection

A default description.

getDefaultParameterCollectionName() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccessGroup

getDefaultParameterCollectionName() - Method in interface org.hkijena.jipipe.api.parameters.JIPipeNamedParameterCollection

A default name.

getDefaultRunThreads() - Method in class org.hkijena.jipipe.extensions.settings.RuntimeSettings

getDefaultTemplateProject() - Static method in class org.hkijena.jipipe.ui.JIPipeProjectWindow

Creates a new project instance based on the current template selection

getDefaultTestBenchThreads() - Method in class org.hkijena.jipipe.extensions.settings.RuntimeSettings

getDefaultViewMode() - Method in class org.hkijena.jipipe.extensions.settings.GraphEditorUISettings

getDefinition() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

getDeltaAngle() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceRadial

getDependencies() - Method in class org.hkijena.jipipe.api.grouping.GraphWrapperAlgorithm

getDependencies() - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

getDependencies() - Method in class org.hkijena.jipipe.api.JIPipeProject

getDependencies() - Method in class org.hkijena.jipipe.api.nodes.JIPipeEmptyNodeInfo

getDependencies() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Gets all dependencies of all algorithms

getDependencies() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Returns a list of all dependencies this algorithm currently has.

getDependencies() - Method in class org.hkijena.jipipe.api.nodes.JIPipeJavaNodeInfo

getDependencies() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeInfo

Returns all dependencies

getDependencies() - Method in class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterNodeInfo

getDependencies() - Method in class org.hkijena.jipipe.JIPipeJsonExtension

getDependencyAlgorithmIds() - Method in class org.hkijena.jipipe.api.registries.JIPipeDefaultNodeRegistrationTask

getDependencyCitations() - Method in class org.hkijena.jipipe.api.compartments.JIPipeCompartmentsExtension

getDependencyCitations() - Method in class org.hkijena.jipipe.api.grouping.GroupingExtension

getDependencyCitations() - Method in class org.hkijena.jipipe.api.JIPipeMetadata

getDependencyCitations() - Method in class org.hkijena.jipipe.extensions.annotation.AnnotationsExtension

getDependencyCitations() - Method in class org.hkijena.jipipe.extensions.clij2.CLIJExtension

getDependencyCitations() - Method in class org.hkijena.jipipe.extensions.core.CoreExtension

getDependencyCitations() - Method in class org.hkijena.jipipe.extensions.filesystem.FilesystemExtension

getDependencyCitations() - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingExtension

getDependencyCitations() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ImageJAlgorithmsExtension

getDependencyCitations() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesExtension

getDependencyCitations() - Method in class org.hkijena.jipipe.extensions.jsonextensionloader.JsonExtensionLoaderExtension

getDependencyCitations() - Method in class org.hkijena.jipipe.extensions.multiparameters.MultiParameterAlgorithmsExtension

getDependencyCitations() - Method in class org.hkijena.jipipe.extensions.multiparameters.MultiParametersExtension

getDependencyCitations() - Method in class org.hkijena.jipipe.extensions.parameters.StandardParametersExtension

getDependencyCitations() - Method in class org.hkijena.jipipe.extensions.plots.PlotsExtension

getDependencyCitations() - Method in class org.hkijena.jipipe.extensions.python.PythonExtension

getDependencyCitations() - Method in class org.hkijena.jipipe.extensions.settings.StandardSettingsExtension

getDependencyCitations() - Method in class org.hkijena.jipipe.extensions.strings.StringsExtension

getDependencyCitations() - Method in class org.hkijena.jipipe.extensions.tables.TablesExtension

getDependencyCitations() - Method in class org.hkijena.jipipe.extensions.tools.ToolsExtension

getDependencyCitations() - Method in class org.hkijena.jipipe.extensions.utils.UtilitiesExtension

getDependencyCitations() - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension

Returns all dependent work

getDependencyDatatypeClasses() - Method in class org.hkijena.jipipe.api.registries.JIPipeDefaultNodeRegistrationTask

getDependencyDatatypeIds() - Method in class org.hkijena.jipipe.api.registries.JIPipeDefaultNodeRegistrationTask

getDependencyId() - Method in class org.hkijena.jipipe.api.compartments.JIPipeCompartmentsExtension

getDependencyId() - Method in class org.hkijena.jipipe.api.grouping.GroupingExtension

getDependencyId() - Method in class org.hkijena.jipipe.extensions.annotation.AnnotationsExtension

getDependencyId() - Method in class org.hkijena.jipipe.extensions.clij2.CLIJExtension

getDependencyId() - Method in class org.hkijena.jipipe.extensions.core.CoreExtension

getDependencyId() - Method in class org.hkijena.jipipe.extensions.filesystem.FilesystemExtension

getDependencyId() - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingExtension

getDependencyId() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ImageJAlgorithmsExtension

getDependencyId() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesExtension

getDependencyId() - Method in class org.hkijena.jipipe.extensions.jsonextensionloader.JsonExtensionLoaderExtension

getDependencyId() - Method in class org.hkijena.jipipe.extensions.multiparameters.MultiParameterAlgorithmsExtension

getDependencyId() - Method in class org.hkijena.jipipe.extensions.multiparameters.MultiParametersExtension

getDependencyId() - Method in class org.hkijena.jipipe.extensions.parameters.StandardParametersExtension

getDependencyId() - Method in class org.hkijena.jipipe.extensions.plots.PlotsExtension

getDependencyId() - Method in class org.hkijena.jipipe.extensions.python.PythonExtension

getDependencyId() - Method in class org.hkijena.jipipe.extensions.settings.StandardSettingsExtension

getDependencyId() - Method in class org.hkijena.jipipe.extensions.strings.StringsExtension

getDependencyId() - Method in class org.hkijena.jipipe.extensions.tables.TablesExtension

getDependencyId() - Method in class org.hkijena.jipipe.extensions.tools.ToolsExtension

getDependencyId() - Method in class org.hkijena.jipipe.extensions.utils.UtilitiesExtension

getDependencyId() - Method in interface org.hkijena.jipipe.JIPipeDependency

getDependencyId() - Method in class org.hkijena.jipipe.JIPipeJsonExtension

getDependencyId() - Method in class org.hkijena.jipipe.JIPipeMutableDependency

getDependencyLocation() - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension

getDependencyLocation() - Method in interface org.hkijena.jipipe.JIPipeDependency

Gets the location of the JAR/JSON that defined the dependency

getDependencyLocation() - Method in class org.hkijena.jipipe.JIPipeJsonExtension

getDependencyLocation() - Method in class org.hkijena.jipipe.JIPipeMutableDependency

getDependencyVersion() - Method in class org.hkijena.jipipe.api.compartments.JIPipeCompartmentsExtension

getDependencyVersion() - Method in class org.hkijena.jipipe.api.grouping.GroupingExtension

getDependencyVersion() - Method in class org.hkijena.jipipe.extensions.annotation.AnnotationsExtension

getDependencyVersion() - Method in class org.hkijena.jipipe.extensions.clij2.CLIJExtension

getDependencyVersion() - Method in class org.hkijena.jipipe.extensions.core.CoreExtension

getDependencyVersion() - Method in class org.hkijena.jipipe.extensions.filesystem.FilesystemExtension

getDependencyVersion() - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingExtension

getDependencyVersion() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ImageJAlgorithmsExtension

getDependencyVersion() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesExtension

getDependencyVersion() - Method in class org.hkijena.jipipe.extensions.jsonextensionloader.JsonExtensionLoaderExtension

getDependencyVersion() - Method in class org.hkijena.jipipe.extensions.multiparameters.MultiParameterAlgorithmsExtension

getDependencyVersion() - Method in class org.hkijena.jipipe.extensions.multiparameters.MultiParametersExtension

getDependencyVersion() - Method in class org.hkijena.jipipe.extensions.parameters.StandardParametersExtension

getDependencyVersion() - Method in class org.hkijena.jipipe.extensions.plots.PlotsExtension

getDependencyVersion() - Method in class org.hkijena.jipipe.extensions.python.PythonExtension

getDependencyVersion() - Method in class org.hkijena.jipipe.extensions.settings.StandardSettingsExtension

getDependencyVersion() - Method in class org.hkijena.jipipe.extensions.strings.StringsExtension

getDependencyVersion() - Method in class org.hkijena.jipipe.extensions.tables.TablesExtension

getDependencyVersion() - Method in class org.hkijena.jipipe.extensions.tools.ToolsExtension

getDependencyVersion() - Method in class org.hkijena.jipipe.extensions.utils.UtilitiesExtension

getDependencyVersion() - Method in interface org.hkijena.jipipe.JIPipeDependency

getDependencyVersion() - Method in class org.hkijena.jipipe.JIPipeJsonExtension

getDependencyVersion() - Method in class org.hkijena.jipipe.JIPipeMutableDependency

getDepth() - Method in class org.hkijena.jipipe.ui.grapheditor.layout.MSTGraphAutoLayoutMethod.Edge

getDepth() - Method in class org.hkijena.jipipe.ui.grapheditor.layout.MSTGraphAutoLayoutMethod.Node

getDescription() - Method in class org.hkijena.jipipe.api.compartments.algorithms.CompartmentNodeTypeCategory

getDescription() - Method in class org.hkijena.jipipe.api.compartments.JIPipeCompartmentsExtension

getDescription() - Method in class org.hkijena.jipipe.api.data.JIPipeDataInfo

getDescription() - Method in class org.hkijena.jipipe.api.grouping.GroupingExtension

getDescription() - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

getDescription(JIPipeParameterTree) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReference

Gets the name or custom name.

getDescription() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccess

getDescription() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceGroup

getDescription() - Method in class org.hkijena.jipipe.api.JIPipeMetadata

getDescription() - Method in class org.hkijena.jipipe.api.nodes.categories.AnnotationsNodeTypeCategory

getDescription() - Method in class org.hkijena.jipipe.api.nodes.categories.DataSourceNodeTypeCategory

getDescription() - Method in class org.hkijena.jipipe.api.nodes.categories.FileSystemNodeTypeCategory

getDescription() - Method in class org.hkijena.jipipe.api.nodes.categories.ImagesNodeTypeCategory

getDescription() - Method in class org.hkijena.jipipe.api.nodes.categories.InternalNodeTypeCategory

getDescription() - Method in class org.hkijena.jipipe.api.nodes.categories.MiscellaneousNodeTypeCategory

getDescription() - Method in class org.hkijena.jipipe.api.nodes.categories.RoiNodeTypeCategory

getDescription() - Method in class org.hkijena.jipipe.api.nodes.categories.TableNodeTypeCategory

getDescription() - Method in class org.hkijena.jipipe.api.nodes.JIPipeEmptyNodeInfo

getDescription() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMutableNodeInfo

getDescription() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeInfo

Returns the algorithm description

getDescription() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeTypeCategory

A description

getDescription() - Method in class org.hkijena.jipipe.api.parameters.JIPipeDefaultParameterTypeInfo

getDescription() - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess

getDescription() - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess

getDescription() - Method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterAccess

Returns a description

getDescription() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node

getDescription() - Method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterTypeInfo

getDescription() - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess

getDescription() - Method in class org.hkijena.jipipe.api.registries.JIPipeTableRegistry.ColumnOperationEntry

getDescription() - Method in class org.hkijena.jipipe.extensions.annotation.AnnotationsExtension

getDescription() - Method in class org.hkijena.jipipe.extensions.clij2.CLIJExtension

getDescription() - Method in class org.hkijena.jipipe.extensions.core.CoreExtension

getDescription() - Method in class org.hkijena.jipipe.extensions.filesystem.FilesystemExtension

getDescription() - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingExtension

getDescription() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ImageJAlgorithmsExtension

getDescription() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesExtension

getDescription() - Method in enum org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.Measurement

getDescription() - Method in class org.hkijena.jipipe.extensions.jsonextensionloader.JsonExtensionLoaderExtension

getDescription() - Method in class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterNodeInfo

getDescription() - Method in class org.hkijena.jipipe.extensions.multiparameters.MultiParameterAlgorithmsExtension

getDescription() - Method in class org.hkijena.jipipe.extensions.multiparameters.MultiParametersExtension

getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.collections.ListParameterItemParameterAccess

getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterInputAccess

getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterOutputAccess

getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterParameterAccess

getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameterContentAccess

getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterKeyAccess

getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterValueAccess

getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.BooleanParameterTypeInfo

getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.BooleanPrimitiveParameterTypeInfo

getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.ByteParameterTypeInfo

getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.BytePrimitiveParameterTypeInfo

getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DoubleParameterTypeInfo

getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DoublePrimitiveParameterTypeInfo

getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.EnumParameterTypeInfo

getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.FloatParameterTypeInfo

getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.FloatPrimitiveParameterTypeInfo

getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.IntParameterTypeInfo

getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.IntPrimitiveParameterTypeInfo

getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.LongParameterTypeInfo

getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.LongPrimitiveParameterTypeInfo

getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.ShortParameterTypeInfo

getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.ShortPrimitiveParameterTypeInfo

getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.StandardParametersExtension

getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTableCellAccess

getDescription() - Method in class org.hkijena.jipipe.extensions.plots.PlotsExtension

getDescription() - Method in class org.hkijena.jipipe.extensions.python.PythonExtension

getDescription() - Method in class org.hkijena.jipipe.extensions.settings.StandardSettingsExtension

getDescription() - Method in class org.hkijena.jipipe.extensions.strings.StringsExtension

getDescription() - Method in class org.hkijena.jipipe.extensions.tables.TablesExtension

getDescription() - Method in class org.hkijena.jipipe.extensions.tools.ToolsExtension

getDescription() - Method in class org.hkijena.jipipe.extensions.utils.UtilitiesExtension

getDescription() - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension

getDescription() - Method in class org.hkijena.jipipe.JIPipeImageJUpdateSiteDependency

getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.AlgorithmGraphCopyNodeUIContextAction

getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.AlgorithmGraphCutNodeUIContextAction

getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.AlgorithmGraphPasteNodeUIContextAction

getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.GraphCompartmentCopyNodeUIContextAction

getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.GraphCompartmentCutNodeUIContextAction

getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.GraphCompartmentPasteNodeUIContextAction

getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.CollapseIOInterfaceNodeUIContextAction

getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DeleteCompartmentUIContextAction

getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DeleteNodeUIContextAction

getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisableNodeUIContextAction

getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisablePassThroughNodeUIContextAction

getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisableSaveOutputsNodeUIContextAction

getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnableNodeUIContextAction

getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnablePassThroughNodeUIContextAction

getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnableSaveOutputsNodeUIContextAction

getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportCompartmentAsJsonNodeUIContextAction

getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportCompartmentToNodeUIContextAction

getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportNodeUIContextAction

getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.GroupNodeUIContextAction

getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.InvertSelectionNodeUIContextAction

getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.IsolateNodesUIContextAction

getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.JsonAlgorithmToGroupNodeUIContextAction

getDescription() - Method in interface org.hkijena.jipipe.ui.grapheditor.contextmenu.NodeUIContextAction

getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.RunAndShowResultsNodeUIContextAction

getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.SelectAllNodeUIContextAction

getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.SelectAndMoveNodeHereNodeUIContextAction

getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.UpdateCacheNodeUIContextAction

getDescriptionArea() - Method in class org.hkijena.jipipe.ui.components.FormPanel.GroupHeaderPanel

getDescriptionOf(Class<? extends JIPipeData>) - Static method in interface org.hkijena.jipipe.api.data.JIPipeData

Returns the description of a data type

getDescriptionOf(Class<? extends JIPipeGraphNode>) - Static method in class org.hkijena.jipipe.api.nodes.JIPipeJavaNodeInfo

Returns the description of an algorithm

getDesktopColor() - Method in class org.hkijena.jipipe.utils.ModernMetalTheme

Returns the desktop color.

getDespeckleIterations() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HessianSegmentation2DAlgorithm

getDestination_x() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Paste2d

getDestination_x() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Paste3d

getDestination_y() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Paste2d

getDestination_y() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Paste3d

getDestination_z() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Paste3d

getDetails() - Method in class org.hkijena.jipipe.api.JIPipeValidityReport.Message

getDetails() - Method in class org.hkijena.jipipe.ui.components.UserFriendlyErrorUI.Entry

getDevice() - Method in class org.hkijena.jipipe.extensions.clij2.CLIJSettings

getDialog() - Method in class org.hkijena.jipipe.ui.components.AddAlgorithmSlotPanel

getDialog() - Method in class org.hkijena.jipipe.ui.components.AddDynamicParameterPanel

getDialog() - Method in class org.hkijena.jipipe.ui.components.EditAlgorithmSlotPanel

getDilationErodeSteps() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.BrightSpotsSegmentation2DAlgorithm

getDilationIterations() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.InternalGradientSegmentation2DAlgorithm

getDimension() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MultiplyImageAndCoordinate

getDimensionalityOf(Class<? extends ImagePlusData>) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ImagePlusData

Gets the dimensionality of ImagePlusData

getDimensionOrder() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMEExporterSettings

getDisplayedName() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeDataSlotUI

getDisplayedParameters() - Method in class org.hkijena.jipipe.ui.parameters.ParameterPanel

getDisplayName() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

Returns a name that includes the algorithm name and the slot name.

getDisplayName(JIPipeProjectWorkbench, JIPipeDataSlot, JIPipeExportedDataTable.Row) - Static method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultDataSlotPreviewUI

Returns a name that identifies this row

getDisplayName() - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultDataSlotRowUI

Returns a name that identifies this row

getDocument() - Method in class org.hkijena.jipipe.ui.components.FormPanel.HoverHelpEvent

getDocument() - Method in class org.hkijena.jipipe.ui.components.MarkdownReader

getDocumentation() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.ContextAction

getDocumentation() - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess

getDocumentationPanel() - Method in class org.hkijena.jipipe.ui.components.DocumentedComponent

getDocumentTabPane() - Method in class org.hkijena.jipipe.ui.compat.RunSingleAlgorithmDialog

getDocumentTabPane() - Method in class org.hkijena.jipipe.ui.ijupdater.MissingUpdateSiteResolver

getDocumentTabPane() - Method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWorkbench

getDocumentTabPane() - Method in class org.hkijena.jipipe.ui.JIPipeProjectWorkbench

getDocumentTabPane() - Method in interface org.hkijena.jipipe.ui.JIPipeWorkbench

getDoublePredicate() - Method in class org.hkijena.jipipe.extensions.parameters.predicates.StringOrDoublePredicate

getDoubleValue() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.StringOrDouble

getDragAndDropBehavior() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

getDuplicateImage() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ImagePlusData

Returns a duplicate of the contained image

getDuplicateImage() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.OMEImageData

Returns a duplicate of the contained image

getEdgesBetween(JIPipeGraphNode, JIPipeGraphNode) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Gets all edges between two algorithm nodes

getEffectiveInputSlotCount() - Method in class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

Returns the number of input slots that are not parameter slots.

getEigenvalueSelection() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HessianSegmentation2DAlgorithm

getEigenvalueSelection2D() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.Hessian2DAlgorithm

getElement() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.generate.GenerateStructureElementAlgorithm

getElement() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.Morphology2DAlgorithm

getEntries() - Method in class org.hkijena.jipipe.api.nodes.JIPipeDataBatchKey

getEntry(int) - Method in class org.hkijena.jipipe.ui.ijupdater.FileTableModel

getEntryClass() - Method in class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2D

getEnumValues(Class<?>) - Static method in class org.hkijena.jipipe.utils.ReflectionUtils

Gets all enum values via reflection

getEqualsString() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ExportDataByParameter

getEquivalentAlgorithm(JIPipeGraphNode) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Returns the algorithm that has the same ID as the foreign algorithm in the foreign graph.

getEquivalentRows(Set<String>) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Returns the row indices grouped by the values of the provided columns

getEquivalentSlot(JIPipeDataSlot) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Returns the slot with the same name within the algorithm with the same ID.

getErosionIterations() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.InternalGradientSegmentation2DAlgorithm

getErroneousNodes() - Method in class org.hkijena.jipipe.JIPipeRegistryIssues

getErroneousPlugins() - Method in class org.hkijena.jipipe.JIPipeRegistryIssues

getEventBus() - Method in class org.hkijena.jipipe.api.compat.SingleImageJAlgorithmRun

getEventBus() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

getEventBus() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo

getEventBus() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

getEventBus() - Method in interface org.hkijena.jipipe.api.data.JIPipeSlotConfiguration

getEventBus() - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

getEventBus() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccessGroup

getEventBus() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccessGroupList

getEventBus() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceGroup

getEventBus() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameters

Event bus that triggers ParameterReferencesChangedEvent

getEventBus() - Method in class org.hkijena.jipipe.api.history.JIPipeGraphHistory

getEventBus() - Method in class org.hkijena.jipipe.api.JIPipeAuthorMetadata

getEventBus() - Method in class org.hkijena.jipipe.api.JIPipeMetadata

getEventBus() - Method in class org.hkijena.jipipe.api.JIPipeProject

getEventBus() - Method in class org.hkijena.jipipe.api.JIPipeProjectCache

getEventBus() - Method in class org.hkijena.jipipe.api.JIPipeRunSettings

getEventBus() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Returns the even bus

getEventBus() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

getEventBus() - Method in class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm.DataBatchGenerationSettings

getEventBus() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm.DataBatchGenerationSettings

getEventBus() - Method in class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm.ParameterSlotAlgorithmSettings

getEventBus() - Method in class org.hkijena.jipipe.api.parameters.JIPipeDummyParameterCollection

getEventBus() - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection

getEventBus() - Method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

Gets the event bus that posts events about the parameters

getEventBus() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree

getEventBus() - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry

Gets the event bus that post registration events

getEventBus() - Method in class org.hkijena.jipipe.api.registries.JIPipeNodeRegistry

Returns the event bus that posts registration events

getEventBus() - Method in class org.hkijena.jipipe.api.registries.JIPipeSettingsRegistry

getEventBus() - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBenchSettings

getEventBus() - Method in class org.hkijena.jipipe.extensions.clij2.CLIJSettings

getEventBus() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesSettings

getEventBus() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMEExporterSettings

getEventBus() - Method in class org.hkijena.jipipe.extensions.parameters.predicates.StringOrDoublePredicate

getEventBus() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.StringOrDouble

getEventBus() - Method in class org.hkijena.jipipe.extensions.parameters.roi.Margin

getEventBus() - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable

getEventBus() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData

getEventBus() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotDataSeries

getEventBus() - Method in class org.hkijena.jipipe.extensions.settings.ExtensionSettings

getEventBus() - Method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings

getEventBus() - Method in class org.hkijena.jipipe.extensions.settings.GeneralUISettings

getEventBus() - Method in class org.hkijena.jipipe.extensions.settings.GraphEditorUISettings

getEventBus() - Method in class org.hkijena.jipipe.extensions.settings.ProjectsSettings

getEventBus() - Method in class org.hkijena.jipipe.extensions.settings.RuntimeSettings

getEventBus() - Method in class org.hkijena.jipipe.extensions.tables.parameters.TableColumnSourceParameter

getEventBus() - Method in class org.hkijena.jipipe.JIPipeDefaultRegistry

getEventBus() - Method in class org.hkijena.jipipe.JIPipeImageJUpdateSiteDependency

getEventBus() - Method in class org.hkijena.jipipe.JIPipeJsonExtension

getEventBus() - Method in interface org.hkijena.jipipe.JIPipeRegistry

getEventBus() - Method in class org.hkijena.jipipe.ui.components.FormPanel

getEventBus() - Method in class org.hkijena.jipipe.ui.components.JIPipeDataTypePicker

getEventBus() - Method in class org.hkijena.jipipe.ui.components.JIPipeNodeInfoPicker

getEventBus() - Method in class org.hkijena.jipipe.ui.components.SearchBox

getEventBus() - Method in interface org.hkijena.jipipe.ui.components.ZoomViewPort

getEventBus() - Method in class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmFinderAlgorithmUI

Returns the event bus

getEventBus() - Method in class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmFinderSlotUI

Returns the event bus.

getEventBus() - Method in class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmFinderUI

Returns the event bus

getEventBus() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

getEventBus() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI

getEventBus() - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotBuilderUI

getEventBus() - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotSeriesBuilder

getEventBus() - Method in class org.hkijena.jipipe.ui.running.JIPipeRunnerQueue

getEventBus() - Method in class org.hkijena.jipipe.ui.running.JIPipeRunWorker

getEventBus() - Method in class org.hkijena.jipipe.ui.settings.JIPipeProjectInfoParameters

getExactValue() - Method in class org.hkijena.jipipe.extensions.parameters.roi.IntModificationParameter

getException() - Method in class org.hkijena.jipipe.ui.events.RunUIWorkerInterruptedEvent

getExecutorService() - Method in class org.hkijena.jipipe.api.JIPipeFixedThreadPool

Returns the ExecutorService or null.

getExpectedNumberOfObjects() - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm

getExponent() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Power

getExportedParameters() - Method in class org.hkijena.jipipe.api.grouping.JsonAlgorithm

getExportedParameters() - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

getExportedParameters() - Method in class org.hkijena.jipipe.api.grouping.NodeGroup

getExportedParameters() - Method in class org.hkijena.jipipe.ui.settings.JIPipeProjectInfoParameters

getExportedSlotNames() - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

getExporterSettings() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.BioFormatsExporter

getExporterSettings() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.OMEImageData

getExportHeight() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData

getExportWidth() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData

getExtension() - Method in class org.hkijena.jipipe.api.events.ExtensionContentAddedEvent

getExtension() - Method in class org.hkijena.jipipe.api.events.ExtensionContentRemovedEvent

getExtension() - Method in class org.hkijena.jipipe.api.events.ExtensionDiscoveredEvent

getExtension() - Method in class org.hkijena.jipipe.api.events.ExtensionRegisteredEvent

getExtensionWorkbenchUI() - Method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWorkbenchPanel

getFactor() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AddImagesWeighted

getFactor() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ReduceStack

getFactor() - Method in class org.hkijena.jipipe.extensions.parameters.roi.IntModificationParameter

getFactor1() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AddImagesWeighted

getFactorX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Scale2d

getFactorX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Scale3d

getFactorY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Scale2d

getFactorY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Scale3d

getFactorZ() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Scale3d

getFailedExtensions() - Method in class org.hkijena.jipipe.JIPipeDefaultRegistry

getFieldClass() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccess

getFieldClass() - Method in class org.hkijena.jipipe.api.parameters.JIPipeDefaultParameterTypeInfo

getFieldClass() - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection.UserParameterDefinition

getFieldClass() - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess

getFieldClass() - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess

getFieldClass() - Method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterAccess

Returns the parameter data type

getFieldClass() - Method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterTypeInfo

getFieldClass() - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess

getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.collections.ListParameterItemParameterAccess

getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterInputAccess

getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterOutputAccess

getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterParameterAccess

getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameterContentAccess

getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterKeyAccess

getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterValueAccess

getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.BooleanParameterTypeInfo

getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.BooleanPrimitiveParameterTypeInfo

getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.ByteParameterTypeInfo

getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.BytePrimitiveParameterTypeInfo

getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DoubleParameterTypeInfo

getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DoublePrimitiveParameterTypeInfo

getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.EnumParameterTypeInfo

getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.FloatParameterTypeInfo

getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.FloatPrimitiveParameterTypeInfo

getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.IntParameterTypeInfo

getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.IntPrimitiveParameterTypeInfo

getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.LongParameterTypeInfo

getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.LongPrimitiveParameterTypeInfo

getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.ShortParameterTypeInfo

getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.ShortPrimitiveParameterTypeInfo

getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable.ParameterColumn

getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTableCellAccess

getFieldClassInfoId() - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess

getFieldClassInfoId() - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable.ParameterColumn

getFileExtension() - Method in class org.hkijena.jipipe.extensions.strings.JSONDataSlotRowUI

getFileExtension() - Method in class org.hkijena.jipipe.extensions.strings.StringResultDataSlotRowUI

getFileExtension() - Method in class org.hkijena.jipipe.extensions.strings.XMLDataSlotRowUI

getFileFromModel(int) - Method in class org.hkijena.jipipe.ui.ijupdater.FileTableModel

getFileMimeType() - Method in class org.hkijena.jipipe.extensions.strings.StringResultDataSlotRowUI

getFileName() - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FileDataSource

getFileNames() - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FileListDataSource

getFilePath() - Method in class org.hkijena.jipipe.extensions.jsonextensionloader.JsonExtensionRegistrationTask

getFilesCollection() - Method in class org.hkijena.jipipe.ui.ijupdater.ManagerUI

getFilesCollection() - Method in class org.hkijena.jipipe.ui.ijupdater.RefreshRepositoryRun

getFilesCollection() - Method in class org.hkijena.jipipe.ui.ijupdater.UpdateSiteListUI

getFillBox() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer

Returns the flag that controls whether or not the box is filled.

getFillColor() - Method in class org.hkijena.jipipe.api.compartments.algorithms.CompartmentNodeTypeCategory

getFillColor() - Method in class org.hkijena.jipipe.api.nodes.categories.AnnotationsNodeTypeCategory

getFillColor() - Method in class org.hkijena.jipipe.api.nodes.categories.DataSourceNodeTypeCategory

getFillColor() - Method in class org.hkijena.jipipe.api.nodes.categories.FileSystemNodeTypeCategory

getFillColor() - Method in class org.hkijena.jipipe.api.nodes.categories.ImagesNodeTypeCategory

getFillColor() - Method in class org.hkijena.jipipe.api.nodes.categories.InternalNodeTypeCategory

getFillColor() - Method in class org.hkijena.jipipe.api.nodes.categories.MiscellaneousNodeTypeCategory

getFillColor() - Method in class org.hkijena.jipipe.api.nodes.categories.RoiNodeTypeCategory

getFillColor() - Method in class org.hkijena.jipipe.api.nodes.categories.TableNodeTypeCategory

getFillColor() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeTypeCategory

The fill color for algorithm nodes

getFillColor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesAlgorithm

getFillColor() - Method in class org.hkijena.jipipe.ui.components.ColorIcon

getFillColor() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI

getFillColorFor(JIPipeNodeInfo) - Static method in class org.hkijena.jipipe.utils.UIUtils

Returns a fill color for JIPipeNodeInfo

getFillMeasurement() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ColorRoiByStatisticsAlgorithm

getFilteredItems() - Method in class org.hkijena.jipipe.ui.compendium.JIPipeAlgorithmCompendiumUI

getFilteredItems() - Method in class org.hkijena.jipipe.ui.compendium.JIPipeCompendiumUI

Returns all items that should be available

getFilterMode() - Method in class org.hkijena.jipipe.extensions.parameters.predicates.StringOrDoublePredicate

getFilters() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.RemoveAnnotationByValue

getFilters() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.FilterPaths

getFilters() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ListFiles

getFilters() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ListSubfolders

getFilters() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.FilterTableAlgorithm

getFilters() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.RemoveColumnAlgorithm

getFilters() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.SplitTableIntoColumnsAlgorithm

getFilterString() - Method in class org.hkijena.jipipe.extensions.parameters.predicates.PathPredicate

getFilterString() - Method in class org.hkijena.jipipe.extensions.parameters.predicates.StringPredicate

getFirstColor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.SetLUTFromColorAlgorithm

getFirstIndex() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm

getFirstInputSlot() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Returns the first input slot according to the slot order.

getFirstInputSlot() - Method in class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

getFirstName() - Method in class org.hkijena.jipipe.api.JIPipeAuthorMetadata

getFirstOutputSlot() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Returns the first output slot according to the slot order.

getFirstSegment() - Method in class org.hkijena.jipipe.ui.grapheditor.connections.NonCollidingRectangularLineDrawer

getFirstSegment() - Method in class org.hkijena.jipipe.ui.grapheditor.connections.RectangularLineDrawer

getFlipMode() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformFlip2DAlgorithm

getFolderPath() - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FolderDataSource

getFolderPaths() - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FolderListDataSource

getFontSize() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm

getForegroundColor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm

getFramesSizeAnnotation() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePropertiesToAnnotationAlgorithm

getFunction() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.ContextAction

getFunctionParameter() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterInputAccess

getFunctionParameter() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterOutputAccess

getFunctionParameter() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterParameterAccess

getFunctions() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.ExtractAndReplaceAnnotation

getGaussianAlgorithm() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast.IlluminationCorrection2DAlgorithm

getGaussianSigma() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.BrightSpotsSegmentation2DAlgorithm

getGaussSigma() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.InternalGradientSegmentation2DAlgorithm

getGeneratedAnnotation() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateWithDataString

getGeneratedAnnotation() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.SimpleFileAnnotationGenerator

getGeneratedAnnotation() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.SimpleFolderAnnotationGenerator

getGeneratedAnnotation() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.SimplePathAnnotationGenerator

getGeneratedAnnotation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExplodeRoiAlgorithm

getGeneratedAnnotation() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.SplitTableByColumnsAlgorithm

getGeneratedAnnotation() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.SplitTableIntoColumnsAlgorithm

getGeneratedColumn() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.ConvertToAnnotationTable

getGeneratedImageType() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.ImagePlusFromFile

getGeneratedType() - Method in class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnGeneratorParameter

getGenerationSettingsInterface() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeDataBatchAlgorithm

Returns the batch generation settings as interface

getGenerationSettingsInterface() - Method in class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm

getGenerationSettingsInterface() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm

getGenerationTime() - Method in class org.hkijena.jipipe.api.JIPipeProjectCache.State

getGeneratorDocumentationFor(Class<? extends JIPipeParameterGeneratorUI>) - Method in class org.hkijena.jipipe.ui.registries.JIPipeUIParameterTypeRegistry

Returns documentation for the generator

getGeneratorsFor(Class<?>) - Method in class org.hkijena.jipipe.ui.registries.JIPipeUIParameterTypeRegistry

Returns all generators for the parameter class

getGeneratorSource() - Method in class org.hkijena.jipipe.extensions.tables.parameters.TableColumnSourceParameter

getGeneratorType() - Method in class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnGeneratorParameter

getGradientRadius() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HessianSegmentation2DAlgorithm

getGraph() - Method in class org.hkijena.jipipe.api.events.NodeConnectedEvent

getGraph() - Method in class org.hkijena.jipipe.api.events.NodeDisconnectedEvent

getGraph() - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

getGraph() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameters

Returns the reference to the graph.

getGraph() - Method in class org.hkijena.jipipe.api.history.AddNodeGraphHistorySnapshot

getGraph() - Method in class org.hkijena.jipipe.api.history.EdgeConnectGraphHistorySnapshot

getGraph() - Method in class org.hkijena.jipipe.api.history.EdgeDisconnectAllTargetsGraphHistorySnapshot

getGraph() - Method in class org.hkijena.jipipe.api.history.EdgeDisconnectGraphHistorySnapshot

getGraph() - Method in class org.hkijena.jipipe.api.history.RemoveNodeGraphHistorySnapshot

getGraph() - Method in class org.hkijena.jipipe.api.JIPipeProject

getGraph() - Method in class org.hkijena.jipipe.api.JIPipeRun

getGraph() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

getGraph() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Returns the graph this algorithm is located in.

getGraph() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeDataSlotUI

getGraph() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

getGraphCanvasUI() - Method in class org.hkijena.jipipe.ui.events.GraphCanvasUpdatedEvent

getGraphEditorCursor() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

getGraphHistory() - Method in class org.hkijena.jipipe.api.events.GraphHistoryChangedEvent

getGraphHistory() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

getGraphUI() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeDataSlotUI

getGraphUI() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI

getGridHeight() - Method in enum org.hkijena.jipipe.ui.grapheditor.JIPipeGraphViewMode

getGridWidth() - Method in enum org.hkijena.jipipe.ui.grapheditor.JIPipeGraphViewMode

getGroupedBySource() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree

Gets the parameters grouped by the source

getGroupInput() - Method in class org.hkijena.jipipe.api.grouping.GraphWrapperAlgorithm

Gets the graphs's input node

getGroupInput() - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

Gets the graphs's input node

getGroupOutput() - Method in class org.hkijena.jipipe.api.grouping.GraphWrapperAlgorithm

Gets the graphs's output node

getGroupOutput() - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

Gets the graphs's output node

getHeight() - Method in class org.hkijena.jipipe.extensions.parameters.roi.Margin

getHeightAnnotation() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePropertiesToAnnotationAlgorithm

getHeightTolerance() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.LocalMaxima2DAlgorithm

getHistogramType() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.HistogramPlotData

getHyperstackReassignments() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.ReorderDimensionsAlgorithm

getIcon() - Method in class org.hkijena.jipipe.api.compartments.algorithms.CompartmentNodeTypeCategory

getIcon() - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

getIcon() - Method in class org.hkijena.jipipe.api.nodes.categories.AnnotationsNodeTypeCategory

getIcon() - Method in class org.hkijena.jipipe.api.nodes.categories.DataSourceNodeTypeCategory

getIcon() - Method in class org.hkijena.jipipe.api.nodes.categories.FileSystemNodeTypeCategory

getIcon() - Method in class org.hkijena.jipipe.api.nodes.categories.ImagesNodeTypeCategory

getIcon() - Method in class org.hkijena.jipipe.api.nodes.categories.InternalNodeTypeCategory

getIcon() - Method in class org.hkijena.jipipe.api.nodes.categories.MiscellaneousNodeTypeCategory

getIcon() - Method in class org.hkijena.jipipe.api.nodes.categories.RoiNodeTypeCategory

getIcon() - Method in class org.hkijena.jipipe.api.nodes.categories.TableNodeTypeCategory

getIcon() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeTypeCategory

Icon shown in the UI

getIcon() - Method in class org.hkijena.jipipe.api.registries.JIPipeSettingsRegistry.Sheet

getIcon(Object) - Method in class org.hkijena.jipipe.extensions.parameters.colors.ColorMapEnumItemInfo

getIcon(Object) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DefaultEnumItemInfo

getIcon(Object) - Method in interface org.hkijena.jipipe.extensions.parameters.primitives.EnumItemInfo

Extracts an icon for the enum value

getIcon() - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane.DocumentTab

getIcon() - Method in class org.hkijena.jipipe.ui.components.ZoomIcon

getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.AlgorithmGraphCopyNodeUIContextAction

getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.AlgorithmGraphCutNodeUIContextAction

getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.AlgorithmGraphPasteNodeUIContextAction

getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.GraphCompartmentCopyNodeUIContextAction

getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.GraphCompartmentCutNodeUIContextAction

getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.GraphCompartmentPasteNodeUIContextAction

getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.CollapseIOInterfaceNodeUIContextAction

getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DeleteCompartmentUIContextAction

getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DeleteNodeUIContextAction

getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisableNodeUIContextAction

getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisablePassThroughNodeUIContextAction

getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisableSaveOutputsNodeUIContextAction

getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnableNodeUIContextAction

getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnablePassThroughNodeUIContextAction

getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnableSaveOutputsNodeUIContextAction

getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportCompartmentAsJsonNodeUIContextAction

getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportCompartmentToNodeUIContextAction

getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportNodeUIContextAction

getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.GroupNodeUIContextAction

getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.InvertSelectionNodeUIContextAction

getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.IsolateNodesUIContextAction

getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.JsonAlgorithmToGroupNodeUIContextAction

getIcon() - Method in interface org.hkijena.jipipe.ui.grapheditor.contextmenu.NodeUIContextAction

getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.RunAndShowResultsNodeUIContextAction

getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.SelectAllNodeUIContextAction

getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.SelectAndMoveNodeHereNodeUIContextAction

getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.UpdateCacheNodeUIContextAction

getIcon128FromResources(String) - Static method in class org.hkijena.jipipe.utils.UIUtils

Returns an icon from JIPipe resources

getIcon32FromResources(String) - Static method in class org.hkijena.jipipe.utils.UIUtils

Returns an icon from JIPipe resources

getIcon64FromResources(String) - Static method in class org.hkijena.jipipe.utils.UIUtils

Returns an icon from JIPipe resources

getIcon8FromResources(String) - Static method in class org.hkijena.jipipe.utils.UIUtils

Returns an icon from JIPipe resources

getIconFor(Class<? extends JIPipeData>) - Method in class org.hkijena.jipipe.ui.registries.JIPipeUIDatatypeRegistry

Returns the icon for a datatype

getIconFor(JIPipeNodeInfo) - Method in class org.hkijena.jipipe.ui.registries.JIPipeUINodeRegistry

Returns the icon for a trait

getIconFromColor(Color) - Static method in class org.hkijena.jipipe.utils.UIUtils

Creates 16x16 a color icon

getIconFromResources(String) - Static method in class org.hkijena.jipipe.utils.UIUtils

Returns an icon from JIPipe resources

getIconHeight() - Method in class org.hkijena.jipipe.extensions.parameters.colors.ColorMapIcon

getIconHeight() - Method in class org.hkijena.jipipe.ui.components.ColorIcon

getIconHeight() - Method in class org.hkijena.jipipe.ui.components.MonochromeColorIcon

getIconHeight() - Method in class org.hkijena.jipipe.ui.components.ZoomIcon

getIconHeight() - Method in class org.hkijena.jipipe.utils.CheckBoxIcon

getIconName() - Method in class org.hkijena.jipipe.extensions.parameters.references.JIPipeAlgorithmIconRef

getIconURL() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.ContextAction

getIconURLFor(Class<? extends JIPipeData>) - Method in class org.hkijena.jipipe.ui.registries.JIPipeUIDatatypeRegistry

getIconURLFor(JIPipeDataInfo) - Method in class org.hkijena.jipipe.ui.registries.JIPipeUIDatatypeRegistry

getIconURLFor(JIPipeNodeInfo) - Method in class org.hkijena.jipipe.ui.registries.JIPipeUINodeRegistry

Returns the icon resource path URL for a trait

getIconURLFromResources(String) - Static method in class org.hkijena.jipipe.utils.UIUtils

Returns an icon from JIPipe resources

getIconWidth() - Method in class org.hkijena.jipipe.extensions.parameters.colors.ColorMapIcon

getIconWidth() - Method in class org.hkijena.jipipe.ui.components.ColorIcon

getIconWidth() - Method in class org.hkijena.jipipe.ui.components.MonochromeColorIcon

getIconWidth() - Method in class org.hkijena.jipipe.ui.components.ZoomIcon

getIconWidth() - Method in class org.hkijena.jipipe.utils.CheckBoxIcon

getId() - Method in class org.hkijena.jipipe.api.compartments.algorithms.CompartmentNodeTypeCategory

getId() - Method in class org.hkijena.jipipe.api.data.JIPipeDataInfo

getId() - Method in class org.hkijena.jipipe.api.events.DatatypeRegisteredEvent

getId() - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

getId() - Method in class org.hkijena.jipipe.api.nodes.categories.AnnotationsNodeTypeCategory

getId() - Method in class org.hkijena.jipipe.api.nodes.categories.DataSourceNodeTypeCategory

getId() - Method in class org.hkijena.jipipe.api.nodes.categories.FileSystemNodeTypeCategory

getId() - Method in class org.hkijena.jipipe.api.nodes.categories.ImagesNodeTypeCategory

getId() - Method in class org.hkijena.jipipe.api.nodes.categories.InternalNodeTypeCategory

getId() - Method in class org.hkijena.jipipe.api.nodes.categories.MiscellaneousNodeTypeCategory

getId() - Method in class org.hkijena.jipipe.api.nodes.categories.RoiNodeTypeCategory

getId() - Method in class org.hkijena.jipipe.api.nodes.categories.TableNodeTypeCategory

getId() - Method in class org.hkijena.jipipe.api.nodes.JIPipeEmptyNodeInfo

getId() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMutableNodeInfo

getId() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeInfo

Generates an Id for this info

getId() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeTypeCategory

Unique identifier of this category

getId() - Method in class org.hkijena.jipipe.api.parameters.JIPipeDefaultParameterTypeInfo

getId() - Method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterTypeInfo

getId() - Method in class org.hkijena.jipipe.api.registries.JIPipeTableRegistry.ColumnOperationEntry

getId() - Method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ImageCalculator2DAlgorithm.Operation

getId() - Method in class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterNodeInfo

getId() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.BooleanParameterTypeInfo

getId() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.BooleanPrimitiveParameterTypeInfo

getId() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.ByteParameterTypeInfo

getId() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.BytePrimitiveParameterTypeInfo

getId() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DoubleParameterTypeInfo

getId() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DoublePrimitiveParameterTypeInfo

getId() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.EnumParameterTypeInfo

getId() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.FloatParameterTypeInfo

getId() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.FloatPrimitiveParameterTypeInfo

getId() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.IntParameterTypeInfo

getId() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.IntPrimitiveParameterTypeInfo

getId() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.LongParameterTypeInfo

getId() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.LongPrimitiveParameterTypeInfo

getId() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.ShortParameterTypeInfo

getId() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.ShortPrimitiveParameterTypeInfo

getId() - Method in class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnConversionParameter

The ID of the selected entry

getId() - Method in class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnIntegrationParameter

The ID of the selected entry

getIdInGraph() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Returns the ID within the current graph.

getIdOf(JIPipeGraphNode) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Returns the ID of the algorithm within this graph.

getIdOf(Class<? extends JIPipeData>) - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry

Gets the ID of the data type

getIgnoredAnnotationColumns() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm

Returns annotation types that should be ignored by the internal logic.

getIgnoredAnnotationColumns() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackMergerAlgorithm

getImage() - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageData

getImage() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ImagePlusData

getImage() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.OMEImageData

getImageArea() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToMaskAlgorithm

getImageArea() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToRGBAlgorithm

getImageFilters() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ImagePlusFromGUI

getImageFiltersOperation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ImagePlusFromGUI

getImageJDataAdapterRegistry() - Method in class org.hkijena.jipipe.JIPipeDefaultRegistry

getImageJDataAdapterRegistry() - Method in interface org.hkijena.jipipe.JIPipeRegistry

getImageJDatatype() - Method in interface org.hkijena.jipipe.api.compat.ImageJDatatypeAdapter

Gets the corresponding ImageJ data type

getImageJDatatype() - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageDataImageJAdapter

getImageJDatatype() - Method in class org.hkijena.jipipe.extensions.filesystem.compat.PathDataImageJAdapter

getImageJDatatype() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ImgPlusDataImageJAdapter

getImageJDatatype() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.OMEImageDataImageJAdapter

getImageJDatatype() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ResultsTableDataImageJAdapter

getImageJDatatype() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ROIDataImageJAdapter

getImageJPlugins() - Method in class org.hkijena.jipipe.JIPipeDefaultRegistry

getImageJRoot() - Static method in class org.hkijena.jipipe.ui.ijupdater.JIPipeImageJPluginManager

getImageJUpdateSiteDependencies() - Method in class org.hkijena.jipipe.extensions.clij2.CLIJExtension

getImageJUpdateSiteDependencies() - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingExtension

getImageJUpdateSiteDependencies() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ImageJAlgorithmsExtension

getImageJUpdateSiteDependencies() - Method in interface org.hkijena.jipipe.JIPipeDependency

List of ImageJ update sites that are dependencies

getImageJUpdateSiteDependencies() - Method in class org.hkijena.jipipe.JIPipeJsonExtension

getImageJUpdateSiteDependencies() - Method in class org.hkijena.jipipe.JIPipeMutableDependency

getImageJUpdateSites() - Method in interface org.hkijena.jipipe.JIPipeDependency

List of ImageJ update sites that provide the dependency

getImageJUpdateSites() - Method in class org.hkijena.jipipe.JIPipeMutableDependency

getImageTypeAnnotation() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePropertiesToAnnotationAlgorithm

getImporter() - Method in class org.hkijena.jipipe.ui.compat.ImageJDatatypeImporterUI

getImporterClassFor(Class<?>) - Method in class org.hkijena.jipipe.ui.registries.JIPipeUIImageJDatatypeAdapterRegistry

Gets the importer for the specified ImageJ data type

getIn() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ReplaceIntensity

getInactiveControlTextColor() - Method in class org.hkijena.jipipe.utils.ModernMetalTheme

Returns the inactive control text color.

getIndex() - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable.Row

getIndex() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LabelToMask

getIndex() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaskLabel

getIndex() - Method in enum org.hkijena.jipipe.extensions.ijmultitemplatematching.TemplateMatchingMethod

getIndexAnnotation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiStatisticsAlgorithm

getIndexIncrement() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm

getInfo() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Returns the JIPipeNodeInfo that describes this algorithm

getInfo() - Method in class org.hkijena.jipipe.extensions.parameters.references.JIPipeDataInfoRef

getInfo() - Method in class org.hkijena.jipipe.extensions.parameters.references.JIPipeNodeInfoRef

getInfo() - Method in class org.hkijena.jipipe.ui.components.JIPipeNodeInfoPicker.AlgorithmDeselectedEvent

getInfo() - Method in class org.hkijena.jipipe.ui.components.JIPipeNodeInfoPicker.NodeSelectedEvent

getInfo() - Method in class org.hkijena.jipipe.ui.extensionbuilder.JsonNodeInfoUI

getInfoByFieldClass(Class<?>) - Method in class org.hkijena.jipipe.api.registries.JIPipeParameterTypeRegistry

Return a parameter type by its field class

getInfoById(String) - Method in class org.hkijena.jipipe.api.registries.JIPipeNodeRegistry

Gets a matching info by Id

getInfoById(String) - Method in class org.hkijena.jipipe.api.registries.JIPipeParameterTypeRegistry

Returns a parameter type info by ID

getInheritanceConversions() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo

getInheritedSlot() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo

Gets slot to inherit the data type from If null or empty, this slot does not inherit If it equals '*', the first available input slot is chosen

getInitialBackup() - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBench

getInput() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameter

getInputClass() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameter

getInputData(String, Class<T>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeDataBatch

Gets stored data from an input slot

getInputData(JIPipeDataSlot, Class<T>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeDataBatch

Gets stored data from an input slot

getInputData(String, Class<T>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch

Gets stored data from an input slot

getInputData(JIPipeDataSlot, Class<T>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch

Gets stored data from an input slot

getInputRows(String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch

Returns the row indices that belong to this data interface

getInputRows(JIPipeDataSlot) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch

Returns the row indices that belong to this data interface

getInputSlot(String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Returns the input slot with the specified name.

getInputSlot() - Method in class org.hkijena.jipipe.ui.events.AlgorithmFinderSuccessEvent

getInputSlotImporters() - Method in class org.hkijena.jipipe.api.compat.SingleImageJAlgorithmRun

getInputSlotMap() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Gets all input slot instances

getInputSlotOrder() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

getInputSlotOrder() - Method in interface org.hkijena.jipipe.api.data.JIPipeSlotConfiguration

getInputSlotOrder() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Gets the input slot order

getInputSlotRows() - Method in class org.hkijena.jipipe.api.nodes.JIPipeDataBatch

Raw access to all data stored in the batch

getInputSlotRows() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch

Raw access to all data stored in the batch

getInputSlots() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

getInputSlots() - Method in interface org.hkijena.jipipe.api.data.JIPipeSlotConfiguration

getInputSlots() - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

getInputSlots() - Method in class org.hkijena.jipipe.api.nodes.JIPipeEmptyNodeInfo

getInputSlots() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Returns all input slots ordered by the slot order

getInputSlots() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMutableNodeInfo

getInputSlots() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeInfo

Returns general input data.

getInputSlots() - Method in class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterNodeInfo

getInputSlotUIs() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeHorizontalNodeUI

getInputSlotUIs() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI

getInputSlotUIs() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeVerticalNodeUI

getInputType() - Method in interface org.hkijena.jipipe.api.data.JIPipeDataConverter

getInputType() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.ImplicitResultsTableDataConverter

getInputType() - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageToImagePlusDataConverter

getInputType() - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.ImagePlusDataToCLIJImageDataConverter

getInputType() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ImplicitPathTypeConverter

getInputType() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePlusToOMEImageTypeConverter

getInputType() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImplicitImageTypeConverter

getInputType() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.OMEImageToImagePlusTypeConverter

getInputType() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.OmeImageToOMEXMLTypeConverter

getInputType() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.OMEImageToROITypeConverter

getInputType() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.PlotToImageTypeConverter

getInputType() - Method in class org.hkijena.jipipe.extensions.strings.StringDataConverter

getInputType() - Method in class org.hkijena.jipipe.extensions.tables.DoubleArrayColumnToTableConverter

getInputType() - Method in class org.hkijena.jipipe.extensions.tables.StringArrayColumnToTableConverter

getInstance(Class<? extends JIPipeData>) - Static method in class org.hkijena.jipipe.api.data.JIPipeDataInfo

Returns a JIPipeDataInfo instance for the data class.

getInstance(String) - Static method in class org.hkijena.jipipe.api.data.JIPipeDataInfo

Returns a JIPipeDataInfo instance for the data type ID.

getInstance() - Static method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry

getInstance() - Static method in class org.hkijena.jipipe.api.registries.JIPipeImageJAdapterRegistry

getInstance() - Static method in class org.hkijena.jipipe.api.registries.JIPipeNodeRegistry

getInstance() - Static method in class org.hkijena.jipipe.api.registries.JIPipeParameterTypeRegistry

getInstance() - Static method in class org.hkijena.jipipe.api.registries.JIPipeSettingsRegistry

getInstance() - Static method in class org.hkijena.jipipe.api.registries.JIPipeTableRegistry

getInstance() - Static method in class org.hkijena.jipipe.extensions.clij2.CLIJSettings

getInstance() - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesSettings

getInstance() - Static method in class org.hkijena.jipipe.extensions.settings.ExtensionSettings

getInstance() - Static method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings

getInstance() - Static method in class org.hkijena.jipipe.extensions.settings.GeneralUISettings

getInstance() - Static method in class org.hkijena.jipipe.extensions.settings.GraphEditorUISettings

getInstance() - Static method in class org.hkijena.jipipe.extensions.settings.ProjectsSettings

getInstance() - Static method in class org.hkijena.jipipe.extensions.settings.RuntimeSettings

getInstance() - Static method in class org.hkijena.jipipe.JIPipeDefaultRegistry

getInstance() - Static method in class org.hkijena.jipipe.ui.components.SplashScreen

getInstance() - Static method in class org.hkijena.jipipe.ui.registries.JIPipeUIDatatypeRegistry

getInstance() - Static method in class org.hkijena.jipipe.ui.registries.JIPipeUIImageJDatatypeAdapterRegistry

getInstance() - Static method in class org.hkijena.jipipe.ui.registries.JIPipeUIMenuServiceRegistry

getInstance() - Static method in class org.hkijena.jipipe.ui.registries.JIPipeUINodeRegistry

getInstance() - Static method in class org.hkijena.jipipe.ui.registries.JIPipeUIParameterTypeRegistry

getInstance() - Static method in class org.hkijena.jipipe.ui.running.JIPipeRunnerQueue

getInstanceClass() - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

getInstanceClass() - Method in class org.hkijena.jipipe.api.nodes.JIPipeEmptyNodeInfo

getInstanceClass() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMutableNodeInfo

getInstanceClass() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeInfo

The algorithm class that is generated

getInstanceClass() - Method in class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterNodeInfo

getInstanceFromRaw() - Static method in class org.hkijena.jipipe.extensions.settings.ExtensionSettings

Gets an instance from the raw properties file.

getInstanceGenerator() - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection

getIntegers() - Method in class org.hkijena.jipipe.extensions.parameters.generators.IntegerRange

Generates the list of integers based on the value

getInternalGradientRadius() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.InternalGradientSegmentation2DAlgorithm

getInternalPath() - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable

getInternalStoragePath() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Returns the internal storage path relative to the output folder.

getInterpolationMethod() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale2DAlgorithm

getInterpolationMethod() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale3DAlgorithm

getInvalidResponses() - Method in class org.hkijena.jipipe.api.JIPipeValidityReport

Gets the response keys that are invalid

getIoMode() - Method in class org.hkijena.jipipe.ui.components.PathEditor

getItemListRenderer() - Method in class org.hkijena.jipipe.ui.compendium.JIPipeAlgorithmCompendiumUI

getItemListRenderer() - Method in class org.hkijena.jipipe.ui.compendium.JIPipeCompendiumUI

Returns the renderer for the items

getItemMargin() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer

Returns the item margin.

getIterations() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumOctagon

getIterations() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumOctagon

getIterations() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyBinary2DAlgorithm

getJIPipeDatatype() - Method in interface org.hkijena.jipipe.api.compat.ImageJDatatypeAdapter

Gets the corresponding JIPipe data type

getJIPipeDatatype() - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageDataImageJAdapter

getJIPipeDatatype() - Method in class org.hkijena.jipipe.extensions.filesystem.compat.PathDataImageJAdapter

getJIPipeDatatype() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ImgPlusDataImageJAdapter

getJIPipeDatatype() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.OMEImageDataImageJAdapter

getJIPipeDatatype() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ResultsTableDataImageJAdapter

getJIPipeDatatype() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ROIDataImageJAdapter

getJsonFilePath() - Method in class org.hkijena.jipipe.JIPipeJsonExtension

getJsonNode() - Method in class org.hkijena.jipipe.extensions.jsonextensionloader.JsonExtensionRegistrationTask

getKernelFunction() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelIterating

getKernelFunction() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelSimpleIterating

getKernelScript() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelIterating

getKernelScript() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelSimpleIterating

getKey() - Method in class org.hkijena.jipipe.api.events.ParameterChangedEvent

getKey() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccess

getKey() - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess

getKey() - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess

getKey() - Method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterAccess

Returns the unique ID of this parameter

getKey() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node

getKey() - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess

getKey() - Method in class org.hkijena.jipipe.extensions.parameters.collections.ListParameterItemParameterAccess

getKey() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterInputAccess

getKey() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterOutputAccess

getKey() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterParameterAccess

getKey() - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameterContentAccess

getKey() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.Pair

getKey() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterKeyAccess

getKey() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterValueAccess

getKey() - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable.ParameterColumn

getKey() - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTableCellAccess

getKey() - Method in class org.hkijena.jipipe.utils.MacroFlag

getKey() - Method in class org.hkijena.jipipe.utils.MacroSetting

getKeyboardShortcut() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.AlgorithmGraphCopyNodeUIContextAction

getKeyboardShortcut() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.AlgorithmGraphCutNodeUIContextAction

getKeyboardShortcut() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.AlgorithmGraphPasteNodeUIContextAction

getKeyboardShortcut() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.GraphCompartmentCopyNodeUIContextAction

getKeyboardShortcut() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.GraphCompartmentCutNodeUIContextAction

getKeyboardShortcut() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.GraphCompartmentPasteNodeUIContextAction

getKeyboardShortcut() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DeleteCompartmentUIContextAction

getKeyboardShortcut() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DeleteNodeUIContextAction

getKeyboardShortcut() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisableNodeUIContextAction

getKeyboardShortcut() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisablePassThroughNodeUIContextAction

getKeyboardShortcut() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnableNodeUIContextAction

getKeyboardShortcut() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnablePassThroughNodeUIContextAction

getKeyboardShortcut() - Method in interface org.hkijena.jipipe.ui.grapheditor.contextmenu.NodeUIContextAction

Returns an optional keyboard shortcut.

getKeyboardShortcut() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.RunAndShowResultsNodeUIContextAction

getKeyboardShortcut() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.SelectAllNodeUIContextAction

getKeyboardShortcut() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.SelectAndMoveNodeHereNodeUIContextAction

getKeyboardShortcut() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.UpdateCacheNodeUIContextAction

getKeyClass() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.Pair

getLabel() - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestbenchSnapshot

getLabel() - Method in enum org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.Measurement

getLabel(Object) - Method in class org.hkijena.jipipe.extensions.parameters.colors.ColorMapEnumItemInfo

getLabel(Object) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DefaultEnumItemInfo

getLabel(Object) - Method in interface org.hkijena.jipipe.extensions.parameters.primitives.EnumItemInfo

Extracts a custom label for the enum value

getLabel() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.DoubleArrayTableColumn

getLabel() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.RowIndexTableColumn

getLabel() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.StringArrayTableColumn

getLabel() - Method in interface org.hkijena.jipipe.extensions.tables.datatypes.TableColumn

Label of this column

getLabel() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ZeroTableColumn

getLabel() - Method in class org.hkijena.jipipe.extensions.tables.TableColumnReference

getLanguage() - Method in class org.hkijena.jipipe.extensions.clij2.parameters.OpenCLKernelScript

getLanguage() - Method in class org.hkijena.jipipe.extensions.parameters.scripts.ImageJMacro

getLanguage() - Method in class org.hkijena.jipipe.extensions.parameters.scripts.PythonScript

getLanguage() - Method in class org.hkijena.jipipe.extensions.parameters.scripts.ScriptParameter

The language info.

getLanguageName() - Method in class org.hkijena.jipipe.extensions.clij2.parameters.OpenCLKernelScript

getLanguageName() - Method in class org.hkijena.jipipe.extensions.parameters.scripts.ImageJMacro

getLanguageName() - Method in class org.hkijena.jipipe.extensions.parameters.scripts.PythonScript

getLanguageName() - Method in class org.hkijena.jipipe.extensions.parameters.scripts.ScriptParameter

Returns the human-readable name of the language

getLargerMajor() - Method in class org.hkijena.jipipe.ui.grapheditor.connections.RectangularLine

getLargerMinor() - Method in class org.hkijena.jipipe.ui.grapheditor.connections.RectangularLine

getLastDirectoryBy(String) - Method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings

Gets the last directory by key

getLastIndex() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm

getLastInputSlot() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Returns the last input slot according to the slot order.

getLastName() - Method in class org.hkijena.jipipe.api.JIPipeAuthorMetadata

getLastOutputSlot() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Returns the last output slot according to the slot order.

getLastParametersDirectory() - Method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings

getLastProjectsDirectory() - Method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings

getLastSegment() - Method in class org.hkijena.jipipe.ui.grapheditor.connections.NonCollidingRectangularLineDrawer

getLastSegment() - Method in class org.hkijena.jipipe.ui.grapheditor.connections.RectangularLineDrawer

getLatestBackup() - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBench

getLeft() - Method in class org.hkijena.jipipe.extensions.parameters.roi.Margin

getLegendItem(int, int) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer

Returns a legend item for a series.

getLicense() - Method in class org.hkijena.jipipe.api.JIPipeMetadata

getLicense() - Method in class org.hkijena.jipipe.extensions.JIPipePrepackagedDefaultJavaExtension

getLicense() - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension

getLineColor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesAlgorithm

getLineMeasurement() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ColorRoiByStatisticsAlgorithm

getLineThickness() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToMaskAlgorithm

getLineThickness() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToMaskAlgorithm

getLineWidth() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesAlgorithm

getListCellRendererComponent(JList<? extends DocumentTabPane.DocumentTab>, DocumentTabPane.DocumentTab, int, boolean, boolean) - Method in class org.hkijena.jipipe.ui.components.DocumentTabListCellRenderer

getListCellRendererComponent(JList<? extends String>, String, int, boolean, boolean) - Method in class org.hkijena.jipipe.ui.components.InheritedSlotListCellRenderer

getListCellRendererComponent(JList<? extends JIPipeGraphNode>, JIPipeGraphNode, int, boolean, boolean) - Method in class org.hkijena.jipipe.ui.components.JIPipeAlgorithmListCellRenderer

getListCellRendererComponent(JList<? extends JIPipeDataInfo>, JIPipeDataInfo, int, boolean, boolean) - Method in class org.hkijena.jipipe.ui.components.JIPipeDataInfoListCellRenderer

getListCellRendererComponent(JList<? extends JIPipeDataInfoRef>, JIPipeDataInfoRef, int, boolean, boolean) - Method in class org.hkijena.jipipe.ui.components.JIPipeDataInfoRefListCellRenderer

getListCellRendererComponent(JList<? extends JIPipeDataInfo>, JIPipeDataInfo, int, boolean, boolean) - Method in class org.hkijena.jipipe.ui.components.JIPipeDataTypePicker.Renderer

getListCellRendererComponent(JList<? extends Map.Entry<JIPipeDataInfo, JIPipeDataInfo>>, Map.Entry<JIPipeDataInfo, JIPipeDataInfo>, int, boolean, boolean) - Method in class org.hkijena.jipipe.ui.components.JIPipeInheritanceConversionListCellRenderer

getListCellRendererComponent(JList<? extends JIPipeNodeInfo>, JIPipeNodeInfo, int, boolean, boolean) - Method in class org.hkijena.jipipe.ui.components.JIPipeNodeInfoListCellRenderer

getListCellRendererComponent(JList<? extends JIPipeNodeInfo>, JIPipeNodeInfo, int, boolean, boolean) - Method in class org.hkijena.jipipe.ui.components.JIPipeNodeInfoPicker.Renderer

getListCellRendererComponent(JList<? extends JIPipeParameterTypeInfo>, JIPipeParameterTypeInfo, int, boolean, boolean) - Method in class org.hkijena.jipipe.ui.components.JIPipeParameterTypeInfoListCellRenderer

getListCellRendererComponent(JList<? extends Path>, Path, int, boolean, boolean) - Method in class org.hkijena.jipipe.ui.components.PathListCellRenderer

getListCellRendererComponent(JList<? extends String>, String, int, boolean, boolean) - Method in class org.hkijena.jipipe.ui.components.PrefixedIconListCellRenderer

getListCellRendererComponent(JList<? extends Path>, Path, int, boolean, boolean) - Method in class org.hkijena.jipipe.ui.components.RecentProjectListCellRenderer

getListCellRendererComponent(JList<? extends ResultsTableData>, ResultsTableData, int, boolean, boolean) - Method in class org.hkijena.jipipe.ui.components.ResultsTableDataListCellRenderer

getListCellRendererComponent(JList<? extends JIPipeProjectTemplate>, JIPipeProjectTemplate, int, boolean, boolean) - Method in class org.hkijena.jipipe.ui.components.TemplateProjectListCellRenderer

getListCellRendererComponent(JList<?>, Object, int, boolean, boolean) - Method in class org.hkijena.jipipe.ui.extensionbuilder.JsonExtensionContentListCellRenderer

getListCellRendererComponent(JList<? extends JIPipeDependency>, JIPipeDependency, int, boolean, boolean) - Method in class org.hkijena.jipipe.ui.extensions.JIPipeDependencyListCellRenderer

getListCellRendererComponent(JList<?>, Object, int, boolean, boolean) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI.NavigationRenderer

getListCellRendererComponent(JList<? extends JIPipeDataSlot>, JIPipeDataSlot, int, boolean, boolean) - Method in class org.hkijena.jipipe.ui.grapheditor.settings.JIPipeDataSlotListCellRenderer

getListCellRendererComponent(JList<? extends TableColumn>, TableColumn, int, boolean, boolean) - Method in class org.hkijena.jipipe.ui.plotbuilder.PlotDataSeriesColumnListCellRenderer

getListCellRendererComponent(JList<? extends JIPipeTestbenchSnapshot>, JIPipeTestbenchSnapshot, int, boolean, boolean) - Method in class org.hkijena.jipipe.ui.testbench.JIPipeDataSlotBackupListCellRenderer

getLocalRadius() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm

getLocation() - Method in class org.hkijena.jipipe.api.JIPipeProjectTemplate

getLocations() - Method in class org.hkijena.jipipe.api.history.MoveNodesGraphHistorySnapshot

getLocations() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

getLocationWithin(String, String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Returns the location within the specified compartment or null if none is set

getLog() - Method in class org.hkijena.jipipe.api.JIPipeRun

getLogo() - Method in class org.hkijena.jipipe.extensions.JIPipePrepackagedDefaultJavaExtension

getLogo() - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension

getLogService() - Method in class org.hkijena.jipipe.JIPipeDefaultRegistry

getMacroParameters() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.MacroWrapperAlgorithm

getMaintainer() - Method in class org.hkijena.jipipe.JIPipeImageJUpdateSiteDependency

getManifestAttributes() - Static method in class org.hkijena.jipipe.utils.ReflectionUtils

getMapFillColor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ColorRoiByStatisticsAlgorithm

getMapFillColor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SortAndExtractRoiByStatisticsAlgorithm

getMapImage() - Method in enum org.hkijena.jipipe.extensions.parameters.colors.ColorMap

getMapLineColor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ColorRoiByStatisticsAlgorithm

getMapLineColor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SortAndExtractRoiByStatisticsAlgorithm

getMarkdown() - Method in class org.hkijena.jipipe.ui.components.MarkdownDocument

getMatrix() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convolve.Convolve2DAlgorithm

getMax() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsWithValuesOutOfRange

getMax() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsWithValuesWithinRange

getMax() - Method in enum org.hkijena.jipipe.extensions.imagejdatatypes.util.CalibrationMode

getMax_display_intensity() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DepthColorProjection

getMax_z() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumZProjectionBounded

getMax_z() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanZProjectionBounded

getMax_z() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumZProjectionBounded

getMax_z() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumZProjectionThresholdedBounded

getMaximumBarWidth() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer

Returns the maximum bar width as a percentage of the available drawing space.

getMaximumGreyValue() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AutomaticThreshold

getMaximumScale() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.FrangiVesselnessFeatures

getMaxInputSlots() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

getMaxIntensity() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2EntropyBox

getMaxNumCircles() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm

getMaxOutputSlots() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

getMaxParticleCircularity() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D

getMaxParticleSize() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D

getMaxProgress() - Method in class org.hkijena.jipipe.api.JIPipeRunnerStatus

getMaxRadius() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.FastHoughSegmentation2DAlgorithm

getMaxRadius() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm

getMaxSlope() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast.CLAHEContrastEnhancer

getMaxThreads() - Method in class org.hkijena.jipipe.api.JIPipeFixedThreadPool

getMeasurementFilters() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterRoiByStatisticsAlgorithm

getMeasurements() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiStatisticsAlgorithm

getMenuBar() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

getMenuDisabledForeground() - Method in class org.hkijena.jipipe.utils.ModernMetalTheme

Returns the menu disabled foreground color.

getMenuExtensionsTargeting(MenuTarget, JIPipeWorkbench) - Method in class org.hkijena.jipipe.ui.registries.JIPipeUIMenuServiceRegistry

Gets all extensions for a specific menu

getMenuPath() - Method in class org.hkijena.jipipe.api.data.JIPipeDataInfo

getMenuPath() - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

getMenuPath() - Method in class org.hkijena.jipipe.api.nodes.JIPipeEmptyNodeInfo

getMenuPath() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMutableNodeInfo

getMenuPath() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeInfo

Gets the menu path of this algorithm

getMenuPath() - Method in class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterNodeInfo

getMenuPath() - Method in class org.hkijena.jipipe.ui.extension.MenuExtension

getMenuPathList() - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

getMenuPathOf(Class<? extends JIPipeData>) - Static method in interface org.hkijena.jipipe.api.data.JIPipeData

Returns the menu path of the data type

getMergedColumn(Set<String>, String, String) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Returns a column that contains all values of the selected columns

getMessage() - Method in class org.hkijena.jipipe.api.JIPipeRunnerStatus

getMessages() - Method in class org.hkijena.jipipe.api.JIPipeValidityReport

getMetadata() - Method in class org.hkijena.jipipe.api.compartments.JIPipeExportedCompartment

getMetadata() - Method in class org.hkijena.jipipe.api.JIPipeProject

getMetadata() - Method in class org.hkijena.jipipe.api.JIPipeProjectTemplate

getMetadata() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.OMEImageData

getMetadata() - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension

getMetadata() - Method in interface org.hkijena.jipipe.JIPipeDependency

getMetadata() - Method in class org.hkijena.jipipe.JIPipeJsonExtension

getMetadata() - Method in class org.hkijena.jipipe.JIPipeMutableDependency

getMetadataColumns() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.AnnotationTableData

Returns all columns that do not identify as annotation (via 'annotation:' prefix)

getMethod() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background.RollingBallBackgroundEstimator2DAlgorithm

getMethod() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.ZProjectorAlgorithm

getMethod() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.AutoThreshold2DAlgorithm

getMimeType() - Method in class org.hkijena.jipipe.extensions.clij2.parameters.OpenCLKernelScript

getMimeType() - Method in class org.hkijena.jipipe.extensions.parameters.scripts.ImageJMacro

getMimeType() - Method in class org.hkijena.jipipe.extensions.parameters.scripts.PythonScript

getMimeType() - Method in class org.hkijena.jipipe.extensions.parameters.scripts.ScriptParameter

Returns the MIME type of this script

getMimeType() - Method in class org.hkijena.jipipe.extensions.strings.JsonData

getMimeType() - Method in class org.hkijena.jipipe.extensions.strings.StringData

Returns the MIME type of the string

getMimeType() - Method in class org.hkijena.jipipe.extensions.strings.XMLData

getMimeType() - Method in class org.hkijena.jipipe.ui.texteditor.JIPipeTextEditor

getMin() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsWithValuesOutOfRange

getMin() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsWithValuesWithinRange

getMin() - Method in enum org.hkijena.jipipe.extensions.imagejdatatypes.util.CalibrationMode

getMin_display_intensity() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DepthColorProjection

getMin_z() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumZProjectionBounded

getMin_z() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanZProjectionBounded

getMin_z() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumZProjectionBounded

getMin_z() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumZProjectionThresholdedBounded

getMinimumGreyValue() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AutomaticThreshold

getMinimumScale() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.FrangiVesselnessFeatures

getMinIntensity() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2EntropyBox

getMinNumCircles() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm

getMinParticleCircularity() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D

getMinParticleSize() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D

getMinRadius() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.FastHoughSegmentation2DAlgorithm

getMinRadius() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm

getMinScore() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.FastHoughSegmentation2DAlgorithm

getMissingImageJSites() - Method in class org.hkijena.jipipe.JIPipeRegistryIssues

getMissingString() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ExportDataByParameter

getMode() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.RemoveOutliersFilter2DAlgorithm

getMode() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm

getMode() - Method in class org.hkijena.jipipe.extensions.parameters.patterns.StringPatternExtraction

getMode() - Method in class org.hkijena.jipipe.extensions.parameters.predicates.DoublePredicate

getMode() - Method in class org.hkijena.jipipe.extensions.parameters.predicates.PathPredicate

getMode() - Method in class org.hkijena.jipipe.extensions.parameters.predicates.StringPredicate

getMode() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.StringOrDouble

getMode() - Method in class org.hkijena.jipipe.extensions.tables.parameters.TableColumnSourceParameter

getMode() - Method in class org.hkijena.jipipe.ui.components.JIPipeDataTypePicker

getMode() - Method in class org.hkijena.jipipe.ui.components.JIPipeNodeInfoPicker

getModel() - Method in class org.hkijena.jipipe.ui.components.SearchBox

getMultiChannelMode() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics.HistogramGenerator

getMultiLineStringByDialog(Component, String, String, String) - Static method in class org.hkijena.jipipe.utils.UIUtils

Gets a multiline string by dialog

getMultiObjectMaximumBoundingBoxOverlap() - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm

getMultiObjectScoreThreshold() - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm

getName() - Method in class org.hkijena.jipipe.api.compartments.algorithms.CompartmentNodeTypeCategory

getName() - Method in class org.hkijena.jipipe.api.compartments.JIPipeCompartmentsExtension

getName() - Method in class org.hkijena.jipipe.api.data.JIPipeAnnotation

getName() - Method in class org.hkijena.jipipe.api.data.JIPipeDataInfo

getName() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

getName() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo

getName() - Method in class org.hkijena.jipipe.api.grouping.GroupingExtension

getName() - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

getName(JIPipeParameterTree) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReference

Gets the name or custom name

getName() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccess

getName() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceGroup

getName() - Method in class org.hkijena.jipipe.api.history.AddCompartmentGraphHistorySnapshot

getName() - Method in class org.hkijena.jipipe.api.history.AddNodeGraphHistorySnapshot

getName() - Method in class org.hkijena.jipipe.api.history.CompoundGraphHistorySnapshot

getName() - Method in class org.hkijena.jipipe.api.history.CutCompartmentGraphHistorySnapshot

getName() - Method in class org.hkijena.jipipe.api.history.CutNodeGraphHistorySnapshot

getName() - Method in class org.hkijena.jipipe.api.history.DeleteCompartmentGraphHistorySnapshot

getName() - Method in class org.hkijena.jipipe.api.history.EdgeConnectGraphHistorySnapshot

getName() - Method in class org.hkijena.jipipe.api.history.EdgeDisconnectAllTargetsGraphHistorySnapshot

getName() - Method in class org.hkijena.jipipe.api.history.EdgeDisconnectGraphHistorySnapshot

getName() - Method in class org.hkijena.jipipe.api.history.GraphChangedHistorySnapshot

getName() - Method in class org.hkijena.jipipe.api.history.ImportCompartmentGraphHistorySnapshot

getName() - Method in interface org.hkijena.jipipe.api.history.JIPipeAlgorithmGraphHistorySnapshot

getName() - Method in class org.hkijena.jipipe.api.history.MoveNodesGraphHistorySnapshot

getName() - Method in class org.hkijena.jipipe.api.history.PasteCompartmentGraphHistorySnapshot

getName() - Method in class org.hkijena.jipipe.api.history.PasteNodeGraphHistorySnapshot

getName() - Method in class org.hkijena.jipipe.api.history.RemoveNodeGraphHistorySnapshot

getName() - Method in class org.hkijena.jipipe.api.history.SlotConfigurationHistorySnapshot

getName() - Method in class org.hkijena.jipipe.api.JIPipeMetadata

getName() - Method in class org.hkijena.jipipe.api.nodes.categories.AnnotationsNodeTypeCategory

getName() - Method in class org.hkijena.jipipe.api.nodes.categories.DataSourceNodeTypeCategory

getName() - Method in class org.hkijena.jipipe.api.nodes.categories.FileSystemNodeTypeCategory

getName() - Method in class org.hkijena.jipipe.api.nodes.categories.ImagesNodeTypeCategory

getName() - Method in class org.hkijena.jipipe.api.nodes.categories.InternalNodeTypeCategory

getName() - Method in class org.hkijena.jipipe.api.nodes.categories.MiscellaneousNodeTypeCategory

getName() - Method in class org.hkijena.jipipe.api.nodes.categories.RoiNodeTypeCategory

getName() - Method in class org.hkijena.jipipe.api.nodes.categories.TableNodeTypeCategory

getName() - Method in class org.hkijena.jipipe.api.nodes.JIPipeEmptyNodeInfo

getName() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Returns the algorithm name

getName() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMutableNodeInfo

getName() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeInfo

Returns the algorithm name

getName() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeTypeCategory

The name displayed in menus and other UI

getName() - Method in class org.hkijena.jipipe.api.parameters.JIPipeDefaultParameterTypeInfo

getName() - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection.UserParameterDefinition

getName() - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess

getName() - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess

getName() - Method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterAccess

Returns the parameter name that is displayed to the user

getName() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node

getName() - Method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterTypeInfo

getName() - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess

getName() - Method in class org.hkijena.jipipe.api.registries.JIPipeSettingsRegistry.Sheet

getName() - Method in class org.hkijena.jipipe.api.registries.JIPipeTableRegistry.ColumnOperationEntry

getName() - Method in class org.hkijena.jipipe.extensions.annotation.AnnotationsExtension

getName() - Method in class org.hkijena.jipipe.extensions.clij2.CLIJExtension

getName() - Method in class org.hkijena.jipipe.extensions.core.CoreExtension

getName() - Method in class org.hkijena.jipipe.extensions.filesystem.FilesystemExtension

getName() - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingExtension

getName() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ImageJAlgorithmsExtension

getName() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesExtension

getName() - Method in class org.hkijena.jipipe.extensions.jsonextensionloader.JsonExtensionLoaderExtension

getName() - Method in class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterNodeInfo

getName() - Method in class org.hkijena.jipipe.extensions.multiparameters.MultiParameterAlgorithmsExtension

getName() - Method in class org.hkijena.jipipe.extensions.multiparameters.MultiParametersExtension

getName() - Method in class org.hkijena.jipipe.extensions.parameters.collections.ListParameterItemParameterAccess

getName() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterInputAccess

getName() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterOutputAccess

getName() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterParameterAccess

getName() - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameterContentAccess

getName() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterKeyAccess

getName() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterValueAccess

getName() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.BooleanParameterTypeInfo

getName() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.BooleanPrimitiveParameterTypeInfo

getName() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.ByteParameterTypeInfo

getName() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.BytePrimitiveParameterTypeInfo

getName() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DoubleParameterTypeInfo

getName() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DoublePrimitiveParameterTypeInfo

getName() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.EnumParameterTypeInfo

getName() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.FloatParameterTypeInfo

getName() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.FloatPrimitiveParameterTypeInfo

getName() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.IntParameterTypeInfo

getName() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.IntPrimitiveParameterTypeInfo

getName() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.LongParameterTypeInfo

getName() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.LongPrimitiveParameterTypeInfo

getName() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.ShortParameterTypeInfo

getName() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.ShortPrimitiveParameterTypeInfo

getName() - Method in class org.hkijena.jipipe.extensions.parameters.StandardParametersExtension

getName() - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable.ParameterColumn

getName() - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTableCellAccess

getName() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotDataSeries

getName() - Method in class org.hkijena.jipipe.extensions.plots.PlotsExtension

getName() - Method in class org.hkijena.jipipe.extensions.python.PythonExtension

getName() - Method in class org.hkijena.jipipe.extensions.settings.StandardSettingsExtension

getName() - Method in class org.hkijena.jipipe.extensions.strings.StringsExtension

getName() - Method in class org.hkijena.jipipe.extensions.tables.TablesExtension

getName() - Method in class org.hkijena.jipipe.extensions.tools.ToolsExtension

getName() - Method in class org.hkijena.jipipe.extensions.utils.UtilitiesExtension

getName() - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension

getName() - Method in class org.hkijena.jipipe.JIPipeImageJUpdateSiteDependency

getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.AlgorithmGraphCopyNodeUIContextAction

getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.AlgorithmGraphCutNodeUIContextAction

getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.AlgorithmGraphPasteNodeUIContextAction

getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.GraphCompartmentCopyNodeUIContextAction

getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.GraphCompartmentCutNodeUIContextAction

getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.GraphCompartmentPasteNodeUIContextAction

getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.CollapseIOInterfaceNodeUIContextAction

getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DeleteCompartmentUIContextAction

getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DeleteNodeUIContextAction

getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisableNodeUIContextAction

getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisablePassThroughNodeUIContextAction

getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisableSaveOutputsNodeUIContextAction

getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnableNodeUIContextAction

getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnablePassThroughNodeUIContextAction

getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnableSaveOutputsNodeUIContextAction

getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportCompartmentAsJsonNodeUIContextAction

getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportCompartmentToNodeUIContextAction

getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportNodeUIContextAction

getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.GroupNodeUIContextAction

getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.InvertSelectionNodeUIContextAction

getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.IsolateNodesUIContextAction

getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.JsonAlgorithmToGroupNodeUIContextAction

getName() - Method in interface org.hkijena.jipipe.ui.grapheditor.contextmenu.NodeUIContextAction

getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.RunAndShowResultsNodeUIContextAction

getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.SelectAllNodeUIContextAction

getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.SelectAndMoveNodeHereNodeUIContextAction

getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.UpdateCacheNodeUIContextAction

getName() - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotSeriesBuilder

getName() - Method in class org.hkijena.jipipe.utils.ModernMetalTheme

Return the name of this theme, "Ocean".

getNameOf(Class<? extends JIPipeData>) - Static method in interface org.hkijena.jipipe.api.data.JIPipeData

Returns the name of a data type

getNameOf(Class<? extends JIPipeGraphNode>) - Static method in class org.hkijena.jipipe.api.nodes.JIPipeJavaNodeInfo

Returns the name of an algorithm

getNativeMeasurementEnumValue() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.MeasurementColumnSortOrder.List

Returns the integer value that describes which measurements to extract

getNativeMeasurementEnumValue() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.MeasurementFilter.List

Returns the integer value that describes which measurements to extract

getNativeValue() - Method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.InterpolationMethod

getNativeValue() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.ImageStatisticsSetParameter

getNativeValue() - Method in enum org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.Measurement

getNativeValue() - Method in enum org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.MeasurementColumn

getNewInstanceGenerator() - Method in class org.hkijena.jipipe.extensions.parameters.collections.SlotMapParameterCollection

getNode() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

getNode() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI

getNodeCount() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

getNodeGroup() - Method in class org.hkijena.jipipe.ui.grouping.JIPipeNodeGroupUI

getNodeInfo() - Method in class org.hkijena.jipipe.api.events.NodeInfoRegisteredEvent

getNodeInfo() - Method in class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterAlgorithm

getNodeInfo() - Method in class org.hkijena.jipipe.ui.extensionbuilder.JIPipeJsonExporter

getNodeInfos() - Method in class org.hkijena.jipipe.JIPipeJsonExtension

getNodeRegistry() - Method in class org.hkijena.jipipe.JIPipeDefaultRegistry

getNodeRegistry() - Method in interface org.hkijena.jipipe.JIPipeRegistry

getNodes() - Method in class org.hkijena.jipipe.api.history.AddNodeGraphHistorySnapshot

getNodes() - Method in class org.hkijena.jipipe.api.history.RemoveNodeGraphHistorySnapshot

getNodes() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Returns all algorithms

getNodesAfter(int, int) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

getNodesOfCategory(JIPipeNodeTypeCategory) - Method in class org.hkijena.jipipe.api.registries.JIPipeNodeRegistry

Gets all algorithms of specified category

getNodeUI() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeDataSlotUI

getNodeUIs() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

getNodeUIsFor(Set<T>) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

getNPoints() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AverageDistanceOfNClosestPoints

getNPoints() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AverageDistanceOfNFarOffPoints

getNumberOfBins() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AutomaticThreshold

getNumScales() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.FrangiVesselnessFeatures

getNumSlices() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ImageToStack

getNumThreads() - Method in class org.hkijena.jipipe.api.JIPipeRunSettings

getNumThreads() - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBenchSettings

getNumThreads() - Method in class org.hkijena.jipipe.ui.compat.RunSingleAlgorithmDialog

getObjectMapper() - Static method in class org.hkijena.jipipe.utils.JsonUtils

getOffset() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ReduceStack

getOpenInputSlots() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Returns all input slots that do not have data set.

getOpenTabs() - Method in class org.hkijena.jipipe.ui.project.JIPipeProjectTabMetadata

getOpenWindows() - Static method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWindow

getOpenWindows() - Static method in class org.hkijena.jipipe.ui.JIPipeProjectWindow

getOperands() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ImageCalculator2DAlgorithm

getOperation() - Method in class org.hkijena.jipipe.api.registries.JIPipeTableRegistry.ColumnOperationEntry

getOperation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ImageCalculator2DAlgorithm

getOperation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.Morphology2DAlgorithm

getOperation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyBinary2DAlgorithm

getOperation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiCalculatorAlgorithm

getOperation() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData.IntegratingColumnOperationEntry

getOperations() - Method in class org.hkijena.jipipe.api.history.CompoundGraphHistorySnapshot

getOperationsOfType(Class<? extends ColumnOperation>) - Method in class org.hkijena.jipipe.api.registries.JIPipeTableRegistry

Returns all operations that are assignable to the filter class

getOptionalParameter() - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameterContentAccess

getOrCreateColumnIndex(String) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Returns the index of an existing column or creates a new column if it does not exist

getOrder() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node

getOrder() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ExtractParent

getOriginalBorderSize() - Method in class org.hkijena.jipipe.ui.components.ZoomFlatIconButton

getOriginalName(JIPipeParameterTree) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReference

Gets the name in the original graph Returns null if resolve() is unsuccessful

getOriginalSize() - Method in class org.hkijena.jipipe.ui.components.ZoomFlatIconButton

getOut() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ReplaceIntensity

getOutline() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.OutlineRoiAlgorithm

getOutline() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RemoveBorderRoisAlgorithm

getOutput() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameter

getOutputClass() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameter

getOutputDirectory() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ExportDataByParameter

getOutputExtension() - Method in class org.hkijena.jipipe.extensions.strings.JsonData

getOutputExtension() - Method in class org.hkijena.jipipe.extensions.strings.StringData

The extension that is generated by the output function

getOutputExtension() - Method in class org.hkijena.jipipe.extensions.strings.XMLData

getOutputNode() - Method in class org.hkijena.jipipe.api.compartments.algorithms.JIPipeProjectCompartment

getOutputPath() - Method in class org.hkijena.jipipe.api.JIPipeRunSettings

getOutputPath() - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBenchSettings

getOutputSlot(String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Returns the output slot with the specified name.

getOutputSlot() - Method in class org.hkijena.jipipe.ui.events.AlgorithmFinderSuccessEvent

getOutputSlotMap() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Gets all output slot instances

getOutputSlotOrder() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

getOutputSlotOrder() - Method in interface org.hkijena.jipipe.api.data.JIPipeSlotConfiguration

getOutputSlots() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

getOutputSlots() - Method in interface org.hkijena.jipipe.api.data.JIPipeSlotConfiguration

getOutputSlots() - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

getOutputSlots() - Method in class org.hkijena.jipipe.api.nodes.JIPipeEmptyNodeInfo

getOutputSlots() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Returns all output slots ordered by the slot order

getOutputSlots() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMutableNodeInfo

getOutputSlots() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeInfo

Returns general output data.

getOutputSlots() - Method in class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterNodeInfo

getOutputSlotUIs() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeHorizontalNodeUI

getOutputSlotUIs() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI

getOutputSlotUIs() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeVerticalNodeUI

getOutputTableModel() - Method in class org.hkijena.jipipe.ui.tableanalyzer.JIPipeIntegrateTableColumnsDialogUI

getOutputType() - Method in interface org.hkijena.jipipe.api.data.JIPipeDataConverter

getOutputType() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.ImplicitResultsTableDataConverter

getOutputType() - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageToImagePlusDataConverter

getOutputType() - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.ImagePlusDataToCLIJImageDataConverter

getOutputType() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ImplicitPathTypeConverter

getOutputType() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.LocalMaxima2DAlgorithm

getOutputType() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePlusToOMEImageTypeConverter

getOutputType() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImplicitImageTypeConverter

getOutputType() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.OMEImageToImagePlusTypeConverter

getOutputType() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.OmeImageToOMEXMLTypeConverter

getOutputType() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.OMEImageToROITypeConverter

getOutputType() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.PlotToImageTypeConverter

getOutputType() - Method in class org.hkijena.jipipe.extensions.strings.StringDataConverter

getOutputType() - Method in class org.hkijena.jipipe.extensions.tables.DoubleArrayColumnToTableConverter

getOutputType() - Method in class org.hkijena.jipipe.extensions.tables.StringArrayColumnToTableConverter

getOverrideFillColor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToRGBAlgorithm

getOverrideFillColor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToRGBAlgorithm

getOverrideLineColor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToRGBAlgorithm

getOverrideLineColor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToRGBAlgorithm

getOverrideLineWidth() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToRGBAlgorithm

getOverrideLineWidth() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToRGBAlgorithm

getPair() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterKeyAccess

getPair() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterValueAccess

getParallelizationBatchSize() - Method in class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm

getParallelizationBatchSize() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm

getParallelizationBatchSize() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeParallelizedAlgorithm

Returns how many threads the actual algorithm requires.

getParallelizationBatchSize() - Method in class org.hkijena.jipipe.api.nodes.JIPipeSimpleIteratingAlgorithm

getParallelizationBatchSize() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.FrangiVesselnessFeatures

getParallelizationBatchSize() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm

getParameter(String) - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection

Gets a parameter by its key

getParameter() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameter

getParameter(Class<T>) - Method in class org.hkijena.jipipe.ui.parameters.JIPipeParameterEditorUI

Gets or creates a parameter instance.

getParameterAccess() - Method in class org.hkijena.jipipe.ui.parameters.JIPipeParameterEditorUI

Gets the parameter accessor

getParameterAnnotationsPrefix() - Method in class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm.ParameterSlotAlgorithmSettings

getParameterClass() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameter

getParameterCollection() - Method in class org.hkijena.jipipe.api.registries.JIPipeSettingsRegistry.Sheet

getParameterData() - Method in class org.hkijena.jipipe.extensions.multiparameters.datatypes.ParametersData

getParameterHelp() - Method in class org.hkijena.jipipe.ui.components.FormPanel

getParameterHolder() - Method in class org.hkijena.jipipe.ui.parameters.JIPipeParameterEditorUI

Gets the object that holds the parameter

getParameterReferenceGroups() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameters

getParameters() - Method in class org.hkijena.jipipe.api.compat.ImageJDatatypeImporter

getParameters() - Method in class org.hkijena.jipipe.api.grouping.JsonAlgorithm

getParameters() - Method in class org.hkijena.jipipe.api.grouping.NodeGroup

getParameters() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccessGroup

getParameters() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccessGroupList

getParameters() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParametersUI

getParameters() - Method in interface org.hkijena.jipipe.api.parameters.JIPipeCustomParameterCollection

Returns all parameters Please note that those parameters must be sourced in this collection.

getParameters() - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection

getParameters() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree

getParameters(JIPipeParameterCollection) - Static method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree

Accesses the parameters of a collection

getParameters() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node

getParameters() - Method in class org.hkijena.jipipe.api.registries.JIPipeSettingsRegistry

getParameters() - Method in class org.hkijena.jipipe.extensions.multiparameters.datasources.ParametersDataDefinition

getParameters() - Method in class org.hkijena.jipipe.extensions.multiparameters.datasources.ParametersDataTableDefinition

getParameters() - Method in class org.hkijena.jipipe.ui.settings.JIPipeProjectInfoParameters

getParametersByPriority() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree

getParameterSlot() - Method in class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

Returns the parameter slot if enabled

getParameterSlotAlgorithmSettings() - Method in class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

getParametersUI() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceGroupUI

getParameterTable() - Method in class org.hkijena.jipipe.extensions.multiparameters.datasources.ParametersDataTableDefinition

getParameterTree() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Extracts all parameters as tree

getParameterTypeRegistry() - Method in class org.hkijena.jipipe.JIPipeDefaultRegistry

getParameterTypeRegistry() - Method in interface org.hkijena.jipipe.JIPipeRegistry

getParent() - Method in class org.hkijena.jipipe.api.grouping.parameters.NodeGroupContents

getParent() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node

getParent() - Method in class org.hkijena.jipipe.extensions.multiparameters.datasources.GeneratedParameters

getParent() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterInputAccess

getParent() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterOutputAccess

getParent() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterParameterAccess

getParent() - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameterContentAccess

getParent() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterKeyAccess

getParent() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterValueAccess

getParentPath() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.RelativizeByParameter

getPath() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReference

getPath() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node

getPath() - Method in class org.hkijena.jipipe.extensions.filesystem.dataypes.PathData

getPath() - Method in class org.hkijena.jipipe.ui.components.PathEditor

getPathMode() - Method in class org.hkijena.jipipe.ui.components.PathEditor

getPathName() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.RenameByString

getPersistence() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccess

getPersistence() - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess

getPersistence() - Method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterAccess

Controls the persistence of the parameter

getPersistence() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node

getPersistence() - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess

getPicker() - Method in class org.hkijena.jipipe.ui.components.JIPipeNodeInfoPicker.AlgorithmDeselectedEvent

getPicker() - Method in class org.hkijena.jipipe.ui.components.JIPipeNodeInfoPicker.NodeSelectedEvent

getPicker() - Method in class org.hkijena.jipipe.ui.components.JIPipeNodeInfoPicker.SelectedTraitsChangedEvent

getPlaneIndex() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CopySlice

getPlaneNumberAnnotation() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePropertiesToAnnotationAlgorithm

getPlotBuilderUI() - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotSeriesBuilder

getPlotType() - Method in class org.hkijena.jipipe.extensions.plots.PlotGeneratorAlgorithm

getPlotType() - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotBuilderUI

getPlotType() - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotSeriesBuilder

getPlotTypeParameters() - Method in class org.hkijena.jipipe.extensions.plots.PlotGeneratorAlgorithm

getPluginDirectory() - Static method in class org.hkijena.jipipe.extensions.jsonextensionloader.JsonExtensionLoaderExtension

getPluginManager() - Method in class org.hkijena.jipipe.ui.ijupdater.UpdateSiteListUI

getPluginResource(String) - Static method in class org.hkijena.jipipe.utils.ResourceUtils

Gets a plugin-internal resource as URL

getPluginResourceAsStream(String) - Static method in class org.hkijena.jipipe.utils.ResourceUtils

Gets a plugin-internal resource as Stream

getPluginResourceAsString(String) - Static method in class org.hkijena.jipipe.utils.ResourceUtils

Gets a plugin resource as string

getPluginService() - Method in class org.hkijena.jipipe.JIPipeDefaultRegistry

getPositionC() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesAlgorithm

getPositionT() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesAlgorithm

getPositionX() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesAlgorithm

getPositionY() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesAlgorithm

getPositionZ() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesAlgorithm

getPredecessorAlgorithms(JIPipeGraphNode, List<JIPipeGraphNode>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Returns all predecessor algorithms of an algorithm.

getPreferredSize() - Method in class org.hkijena.jipipe.ui.components.SearchBox

getPreferredSize() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

getPrefix() - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.TemporaryFileDataSource

getPreprocessingScript() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelIterating

getPreprocessingScript() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelSimpleIterating

getPreviewHeight() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.misc.DataToPreviewAlgorithm

getPreviewHeight() - Method in class org.hkijena.jipipe.extensions.settings.GeneralUISettings

getPreviewWidth() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.misc.DataToPreviewAlgorithm

getPreviewWidth() - Method in class org.hkijena.jipipe.extensions.settings.GeneralUISettings

getPrimary1() - Method in class org.hkijena.jipipe.utils.ModernMetalTheme

Returns the primary 1 color.

getPrimary2() - Method in class org.hkijena.jipipe.utils.ModernMetalTheme

Returns the primary 2 color.

getPrimary3() - Method in class org.hkijena.jipipe.utils.ModernMetalTheme

Returns the primary 3 color.

getPriority() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccess

getPriority() - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess

getPriority() - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess

getPriority() - Method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterAccess

Returns the priority for (de)serializing this parameter.

getPriority() - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess

getPriority() - Method in class org.hkijena.jipipe.extensions.parameters.collections.ListParameterItemParameterAccess

getPriority() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterInputAccess

getPriority() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterOutputAccess

getPriority() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterParameterAccess

getPriority() - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameterContentAccess

getPriority() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterKeyAccess

getPriority() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterValueAccess

getPriority() - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTableCellAccess

getProcessorParameters() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ConvertColumnsAlgorithm

getProcessorParameters() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.IntegrateColumnsAlgorithm

getProgress() - Method in class org.hkijena.jipipe.api.JIPipeRunnerStatus

getProject() - Method in class org.hkijena.jipipe.api.compartments.algorithms.JIPipeProjectCompartment

getProject() - Method in class org.hkijena.jipipe.api.history.AddCompartmentGraphHistorySnapshot

getProject() - Method in class org.hkijena.jipipe.api.history.DeleteCompartmentGraphHistorySnapshot

getProject() - Method in class org.hkijena.jipipe.api.history.ImportCompartmentGraphHistorySnapshot

getProject() - Method in class org.hkijena.jipipe.api.JIPipeProjectCache

getProject() - Method in class org.hkijena.jipipe.api.JIPipeRun

getProject() - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBench

getProject() - Method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWindow

getProject() - Method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWorkbench

getProject() - Method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWorkbenchPanel

getProject() - Method in class org.hkijena.jipipe.ui.JIPipeProjectWindow

getProject() - Method in class org.hkijena.jipipe.ui.JIPipeProjectWorkbench

getProject() - Method in class org.hkijena.jipipe.ui.JIPipeProjectWorkbenchPanel

getProject() - Method in class org.hkijena.jipipe.ui.settings.JIPipeProjectInfoParameters

getProjectAlgorithm() - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBench

getProjectCompartmentId() - Method in class org.hkijena.jipipe.api.compartments.algorithms.JIPipeProjectCompartment

getProjectCompartmentTooltip(JIPipeProjectCompartment, JIPipeGraph) - Static method in class org.hkijena.jipipe.utils.TooltipUtils

Creates a tooltip for a project compartment

getProjectSavePath() - Method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWindow

getProjectSavePath() - Method in class org.hkijena.jipipe.ui.JIPipeProjectWindow

getProjectTemplate() - Method in class org.hkijena.jipipe.extensions.settings.ProjectsSettings

getProjectType() - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

getProjectType() - Method in class org.hkijena.jipipe.JIPipeJsonExtension

getProjectUI() - Method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWindow

getProjectUI() - Method in class org.hkijena.jipipe.ui.JIPipeProjectWindow

getProjectWorkbench() - Method in class org.hkijena.jipipe.ui.JIPipeProjectWorkbenchPanel

getPropertyFile() - Static method in class org.hkijena.jipipe.api.registries.JIPipeSettingsRegistry

getPropertyPanel() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

getRadius() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ClosingBox

getRadius() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ClosingDiamond

getRadius() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2OpeningBox

getRadius() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2OpeningDiamond

getRadius() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background.RollingBallBackgroundEstimator2DAlgorithm

getRadius() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurFilter2DAlgorithm

getRadius() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.generate.GenerateStructureElementAlgorithm

getRadius() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMaximumFilter2DAlgorithm

getRadius() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMinimumFilter2DAlgorithm

getRadius() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalVarianceFilter2DAlgorithm

getRadius() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.RemoveNaNFilter2DAlgorithm

getRadius() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.Morphology2DAlgorithm

getRadius() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyInternalGradient2DAlgorithm

getRadius() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.RemoveOutliersFilter2DAlgorithm

getRadiusIncrement() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm

getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BottomHatBox

getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BottomHatSphere

getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountNonZeroPixels2dSphere

getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountNonZeroPixelsSliceBySliceSphere

getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountNonZeroVoxels3dSphere

getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DetectMaximaSliceBySliceBox

getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DetectMinimaSliceBySliceBox

getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2EntropyBox

getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum2dBox

getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum2dSphere

getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum3dBox

getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum3dSphere

getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumSliceBySliceSphere

getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean2dBox

getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean2dSphere

getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean3dBox

getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean3dSphere

getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanSliceBySliceSphere

getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median2dBox

getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median2dSphere

getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median3dBox

getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median3dSphere

getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MedianSliceBySliceBox

getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MedianSliceBySliceSphere

getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum2dBox

getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum2dSphere

getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum3dBox

getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum3dSphere

getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumSliceBySliceSphere

getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TopHatBox

getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TopHatSphere

getRadiusX() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.BoxFilter3DAlgorithm

getRadiusX() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurFilter3DAlgorithm

getRadiusX() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMaximumFilter3DAlgorithm

getRadiusX() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMinimumFilter3DAlgorithm

getRadiusX() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalVarianceFilter3DAlgorithm

getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BottomHatBox

getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BottomHatSphere

getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountNonZeroPixels2dSphere

getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountNonZeroPixelsSliceBySliceSphere

getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountNonZeroVoxels3dSphere

getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DetectMaximaSliceBySliceBox

getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DetectMinimaSliceBySliceBox

getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2EntropyBox

getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum2dBox

getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum2dSphere

getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum3dBox

getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum3dSphere

getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumSliceBySliceSphere

getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean2dBox

getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean2dSphere

getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean3dBox

getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean3dSphere

getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanSliceBySliceSphere

getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median2dBox

getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median2dSphere

getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median3dBox

getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median3dSphere

getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MedianSliceBySliceBox

getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MedianSliceBySliceSphere

getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum2dBox

getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum2dSphere

getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum3dBox

getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum3dSphere

getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumSliceBySliceSphere

getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TopHatBox

getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TopHatSphere

getRadiusY() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.BoxFilter3DAlgorithm

getRadiusY() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurFilter3DAlgorithm

getRadiusY() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMaximumFilter3DAlgorithm

getRadiusY() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMinimumFilter3DAlgorithm

getRadiusY() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalVarianceFilter3DAlgorithm

getRadiusZ() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BottomHatBox

getRadiusZ() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BottomHatSphere

getRadiusZ() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountNonZeroVoxels3dSphere

getRadiusZ() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2EntropyBox

getRadiusZ() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum3dBox

getRadiusZ() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum3dSphere

getRadiusZ() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean3dBox

getRadiusZ() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean3dSphere

getRadiusZ() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median3dBox

getRadiusZ() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median3dSphere

getRadiusZ() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum3dBox

getRadiusZ() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum3dSphere

getRadiusZ() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TopHatBox

getRadiusZ() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TopHatSphere

getRadiusZ() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.BoxFilter3DAlgorithm

getRadiusZ() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurFilter3DAlgorithm

getRadiusZ() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMaximumFilter3DAlgorithm

getRadiusZ() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMinimumFilter3DAlgorithm

getRadiusZ() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalVarianceFilter3DAlgorithm

getRankAt(int) - Method in class org.hkijena.jipipe.utils.RankedData

getRankingFunction() - Method in class org.hkijena.jipipe.ui.components.SearchBox

getRatio() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm

getRawNode() - Static method in class org.hkijena.jipipe.api.registries.JIPipeSettingsRegistry

Gets the raw property files Json node

getRecentJsonExtensionProjects() - Method in class org.hkijena.jipipe.extensions.settings.ProjectsSettings

getRecentProjects() - Method in class org.hkijena.jipipe.extensions.settings.ProjectsSettings

getRectangles() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.AppendRectangularRoiAlgorithm

getRectangles() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.DefineRectangularRoiAlgorithm

getRectangles() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ReferencedAppendRectangularRoiAlgorithm

getRectangles() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ReferencedDefineRectangularRoiAlgorithm

getRedoLocation() - Method in class org.hkijena.jipipe.api.history.MoveNodesGraphHistorySnapshot

getReference() - Method in class org.hkijena.jipipe.extensions.parameters.predicates.DoublePredicate

getReferenceImage(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ImageRoiProcessorAlgorithm

Extracts or generates the reference image.

getReferenceSlice() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2EqualizeMeanIntensitiesOfSlices

getRegexString() - Method in class org.hkijena.jipipe.extensions.parameters.patterns.StringPatternExtraction

getRegisteredAdapters() - Method in class org.hkijena.jipipe.api.registries.JIPipeImageJAdapterRegistry

getRegisteredCategories() - Method in class org.hkijena.jipipe.api.registries.JIPipeNodeRegistry

getRegisteredColumnOperations() - Method in class org.hkijena.jipipe.api.registries.JIPipeTableRegistry

getRegisteredDataTypes() - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry

Gets all registered data types

getRegisteredExtensionIds() - Method in class org.hkijena.jipipe.JIPipeDefaultRegistry

getRegisteredExtensionIds() - Method in interface org.hkijena.jipipe.JIPipeRegistry

getRegisteredExtensions() - Method in class org.hkijena.jipipe.JIPipeDefaultRegistry

getRegisteredExtensions() - Method in interface org.hkijena.jipipe.JIPipeRegistry

getRegisteredExtensions() - Method in class org.hkijena.jipipe.ui.registries.JIPipeUIMenuServiceRegistry

getRegisteredImporters() - Method in class org.hkijena.jipipe.ui.registries.JIPipeUIImageJDatatypeAdapterRegistry

getRegisteredNodeInfos() - Method in class org.hkijena.jipipe.api.registries.JIPipeNodeRegistry

Gets the set of all known algorithms

getRegisteredParameters() - Method in class org.hkijena.jipipe.api.registries.JIPipeParameterTypeRegistry

getRegisteredSheets() - Method in class org.hkijena.jipipe.api.registries.JIPipeSettingsRegistry

getRegisteredSources() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree

getRegistry() - Method in class org.hkijena.jipipe.api.events.ExtensionDiscoveredEvent

getRegistry() - Method in class org.hkijena.jipipe.api.events.ExtensionRegisteredEvent

getRegistry() - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension

getRegistry() - Method in interface org.hkijena.jipipe.JIPipeJavaExtension

Returns the registry

getRegistry() - Method in class org.hkijena.jipipe.JIPipeJsonExtension

getRegistry() - Method in class org.hkijena.jipipe.ui.components.SplashScreen

getRelativeLocation() - Method in class org.hkijena.jipipe.api.JIPipeProjectTemplate

getRelevantParameterKeys() - Method in class org.hkijena.jipipe.extensions.parameters.roi.Margin

Finds the parameter keys that are relevant according to the current anchor setting The anchor key 'anchor' is not part of the result.

getRelevantParameters() - Method in enum org.hkijena.jipipe.extensions.parameters.roi.Anchor

getRenamingEntries() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.RenameColumnsAlgorithm

getRenamingEntries() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.RenameTableColumnsAlgorithm

getRenderedHTML() - Method in class org.hkijena.jipipe.ui.components.MarkdownDocument

getReport() - Method in class org.hkijena.jipipe.ui.components.ReloadableValidityChecker

getResolution() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm

getResourceBasePath() - Static method in class org.hkijena.jipipe.utils.ResourceUtils

getResourcePath() - Method in class org.hkijena.jipipe.api.JIPipeProjectTemplate

getResourcePath(String) - Static method in class org.hkijena.jipipe.utils.ResourceUtils

Gets an internal resource.

getRight() - Method in class org.hkijena.jipipe.extensions.parameters.roi.Margin

getRightX() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI

getRoi() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformCrop2DAlgorithm

GetRoiImageAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

Wrapper around RoiManager

GetRoiImageAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.GetRoiImageAlgorithm

Instantiates a new node type.

GetRoiImageAlgorithm(GetRoiImageAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.GetRoiImageAlgorithm

Instantiates a new node type.

getRoiName() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesAlgorithm

getRois() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.OMEImageData

getRollingBallRadius() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.BrightSpotsSegmentation2DAlgorithm

getRoot() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree

getRotateTemplate() - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm

getRotationDirection() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformRotate2DAlgorithm

getRotations() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformRotate2DAlgorithm

getRow(int) - Method in class org.hkijena.jipipe.api.data.JIPipeMergedDataSlotTable

Returns the location

getRow() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData.Index

getRow() - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultDataSlotRowUI

Returns the data row that is displayed

getRowAsDouble(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.DoubleArrayTableColumn

getRowAsDouble(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.RowIndexTableColumn

getRowAsDouble(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.StringArrayTableColumn

getRowAsDouble(int) - Method in interface org.hkijena.jipipe.extensions.tables.datatypes.TableColumn

Returns the data entry as string

getRowAsDouble(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ZeroTableColumn

getRowAsDouble(int) - Method in class org.hkijena.jipipe.extensions.tables.TableColumnReference

getRowAsString(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.DoubleArrayTableColumn

getRowAsString(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.RowIndexTableColumn

getRowAsString(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.StringArrayTableColumn

getRowAsString(int) - Method in interface org.hkijena.jipipe.extensions.tables.datatypes.TableColumn

Returns the data entry as string

getRowAsString(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ZeroTableColumn

getRowAsString(int) - Method in class org.hkijena.jipipe.extensions.tables.TableColumnReference

getRowComparator(ResultsTableData) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.MeasurementColumnSortOrder

Creates a comparator for ResultsTableData rows that is equivalent to the column order in this object

getRowCount() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

getRowCount() - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable

getRowCount() - Method in class org.hkijena.jipipe.api.data.JIPipeMergedDataSlotTable

getRowCount() - Method in class org.hkijena.jipipe.api.data.JIPipeMergedExportedDataTable

getRowCount() - Method in class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2D

getRowCount() - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable

getRowCount() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

getRowCount() - Method in class org.hkijena.jipipe.ui.batchassistant.DataSlotTableUI.WrapperTableModel

getRowCount() - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheDataSlotTableUI.WrapperTableModel

getRowCount() - Method in class org.hkijena.jipipe.ui.ijupdater.FileTableModel

getRowGenerator() - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable

getRowList() - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable

getRowList() - Method in class org.hkijena.jipipe.api.data.JIPipeMergedDataSlotTable

getRowList() - Method in class org.hkijena.jipipe.api.data.JIPipeMergedExportedDataTable

getRows() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.MontageToStackAlgorithm

getRows() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm

getRows() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.DoubleArrayTableColumn

getRows(Collection<Integer>) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Returns a new table that only contains the selected rows.

getRows() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.RowIndexTableColumn

getRows() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.StringArrayTableColumn

getRows() - Method in interface org.hkijena.jipipe.extensions.tables.datatypes.TableColumn

Returns the number of rows that are existing (not generated)

getRows() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ZeroTableColumn

getRows() - Method in class org.hkijena.jipipe.extensions.tables.TableColumnReference

getRowStorageFolder(JIPipeDataSlot, JIPipeExportedDataTable.Row) - Static method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultDataSlotPreviewUI

Returns the folder where the data is stored

getRowStorageFolder() - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultDataSlotRowUI

Returns the folder where the data is stored

getRun() - Method in class org.hkijena.jipipe.ui.events.RunUIWorkerFinishedEvent

getRun() - Method in class org.hkijena.jipipe.ui.events.RunUIWorkerInterruptedEvent

getRun() - Method in class org.hkijena.jipipe.ui.events.RunUIWorkerProgressEvent

getRun() - Method in class org.hkijena.jipipe.ui.events.RunUIWorkerStartedEvent

getRun() - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultUI

getRun() - Method in class org.hkijena.jipipe.ui.running.JIPipeRunWorker

getRunSettings() - Method in class org.hkijena.jipipe.ui.compat.RunSingleAlgorithmDialog

getSameColumnOperation() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.FilterTableAlgorithm

getSameMeasurementOperation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterRoiByStatisticsAlgorithm

getScalar() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AddImageAndScalar

getScalar() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2EqualConstant

getScalar() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GreaterConstant

getScalar() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GreaterOrEqualConstant

getScalar() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MultiplyImageAndScalar

getScalar() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NotEqualConstant

getScalar() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SmallerConstant

getScalar() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SmallerOrEqualConstant

getScalar() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SubtractImageFromScalar

getScale() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm

getScaleFactorX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceRadial

getScaleFactorY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceRadial

getScales() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.MeijeringVesselness2DFeatures

getScheduledRegistrationTasks() - Method in class org.hkijena.jipipe.api.registries.JIPipeNodeRegistry

getScriptParameters() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.ModifyAnnotationScript

getScriptParameters() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.SplitByAnnotationScript

getScriptParameters() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelIterating

getScriptParameters() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelSimpleIterating

getScriptParameters() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterAndMergeRoiByStatisticsScriptAlgorithm

getScriptParameters() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterRoiByStatisticsScriptAlgorithm

getScriptParameters() - Method in class org.hkijena.jipipe.extensions.python.IteratingPythonScriptAlgorithm

getScriptParameters() - Method in class org.hkijena.jipipe.extensions.python.MergingPythonScriptAlgorithm

getScriptParameters() - Method in class org.hkijena.jipipe.extensions.python.ParameterSlotPythonScriptAlgorithm

getScriptParameters() - Method in class org.hkijena.jipipe.extensions.python.PythonScriptAlgorithm

getScriptParameters() - Method in class org.hkijena.jipipe.extensions.python.SimpleIteratingPythonScriptAlgorithm

getScriptParameters() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ModifyAndMergeTablesScript

getScriptParameters() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ModifyTablesScript

getScriptParameters() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.TablesFromScript

getScrollPane() - Method in class org.hkijena.jipipe.ui.components.FormPanel

getScrollPane() - Method in class org.hkijena.jipipe.ui.components.MarkdownReader

getScrollPane() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

getSearchField() - Method in class org.hkijena.jipipe.ui.compendium.JIPipeCompendiumUI

getSearchStrings() - Method in class org.hkijena.jipipe.ui.components.SearchTextField

Returns the search strings according to the current text

getSecondary1() - Method in class org.hkijena.jipipe.utils.ModernMetalTheme

Returns the secondary 1 color.

getSecondary2() - Method in class org.hkijena.jipipe.utils.ModernMetalTheme

Returns the secondary 2 color.

getSecondary3() - Method in class org.hkijena.jipipe.utils.ModernMetalTheme

Returns the secondary 3 color.

getSecondColor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.SetLUTFromColorAlgorithm

getSelectedDataTypes() - Method in class org.hkijena.jipipe.ui.components.JIPipeDataTypePicker

getSelectedIcon() - Method in class org.hkijena.jipipe.ui.components.JIPipeIconPickerDialog

getSelectedInfo() - Method in class org.hkijena.jipipe.ui.components.AddAlgorithmSlotPanel

getSelectedInfo() - Method in class org.hkijena.jipipe.ui.components.AddDynamicParameterPanel

getSelectedInfo() - Method in class org.hkijena.jipipe.ui.components.EditAlgorithmSlotPanel

getSelectedInfos() - Method in class org.hkijena.jipipe.ui.components.JIPipeNodeInfoPicker

getSelectedItem() - Method in class org.hkijena.jipipe.ui.components.SearchBox

getSelectedNode() - Method in class org.hkijena.jipipe.ui.components.PickNodeDialog

getSelectedNodes() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

getSelectedSlot() - Method in class org.hkijena.jipipe.ui.grapheditor.settings.JIPipeSlotEditorUI

getSelectedSources() - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotSeriesBuilder

Returns the currently selected sources.

getSelectedTab() - Method in class org.hkijena.jipipe.ui.project.JIPipeProjectTabMetadata

getSelectedTemplate() - Method in class org.hkijena.jipipe.ui.project.JIPipeTemplateSelectionDialog

getSelection() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SortAndExtractRoiByStatisticsAlgorithm

getSelection() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

getSelection() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

getSeparatorString() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ExportDataByParameter

getSeries() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData

getSeriesBuilders() - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotBuilderUI

getSettings(String, Class<T>) - Method in class org.hkijena.jipipe.api.registries.JIPipeSettingsRegistry

Gets the settings instance with given ID

getSettings() - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBench

getSettingsRegistry() - Method in class org.hkijena.jipipe.JIPipeDefaultRegistry

getSettingsRegistry() - Method in interface org.hkijena.jipipe.JIPipeRegistry

getShortKey() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccess

getShortKey() - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess

getShortKey() - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess

getShortKey() - Method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterAccess

Returns a short form of the ID used, for example to generate a parameter string.

getShortKey() - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess

getShortKey() - Method in class org.hkijena.jipipe.extensions.parameters.collections.ListParameterItemParameterAccess

getShortKey() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterInputAccess

getShortKey() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterOutputAccess

getShortKey() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterParameterAccess

getShortKey() - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameterContentAccess

getShortKey() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterKeyAccess

getShortKey() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterValueAccess

getShortKey() - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTableCellAccess

getShortName() - Method in class org.hkijena.jipipe.api.registries.JIPipeTableRegistry.ColumnOperationEntry

getSigma() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.AddNoise2DAlgorithm

getSigma1x() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian2d

getSigma1x() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian3d

getSigma1y() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian2d

getSigma1y() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian3d

getSigma1z() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian3d

getSigma2x() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian2d

getSigma2x() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian3d

getSigma2y() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian2d

getSigma2y() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian3d

getSigma2z() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian3d

getSigmaX() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.GaussianBlur2DAlgorithm

getSigmaX() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.GaussianBlur3DAlgorithm

getSigmaY() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.GaussianBlur2DAlgorithm

getSigmaY() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.GaussianBlur3DAlgorithm

getSigmaZ() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.GaussianBlur3DAlgorithm

getSingletonTabs() - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane

getSlice(TableColumn, List<Integer>) - Static method in interface org.hkijena.jipipe.extensions.tables.datatypes.TableColumn

Returns a new table column that contains the selected rows in the provided order

getSliceAnnotation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics.GreyscalePixelsGenerator

getSliceAnnotation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics.HistogramGenerator

getSlicingMode() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.FrangiVesselnessFeatures

getSlot(int) - Method in class org.hkijena.jipipe.api.data.JIPipeMergedDataSlotTable

Gets the slot that defined the specified row

getSlot(int) - Method in class org.hkijena.jipipe.api.data.JIPipeMergedExportedDataTable

Gets the slot that defined the specified row

getSlot() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeDataSlotUI

getSlot() - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultDataSlotRowUI

Returns the data slot

getSlotConfiguration() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Gets the slot configuration

getSlotCount() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

getSlotDataType() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeDataSlotUI

getSlotEdges() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Returns all edges as set of edges

getSlotInstanceTooltip(JIPipeDataSlot) - Static method in class org.hkijena.jipipe.utils.TooltipUtils

Creates a tooltip for an JIPipeDataSlot

getSlotLocation(JIPipeDataSlot) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

Returns the UI location of a data slot that is located in the graph

getSlotLocation(JIPipeDataSlot) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeHorizontalNodeUI

getSlotLocation(JIPipeDataSlot) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI

Returns the location of a slot in relative coordinates

getSlotLocation(JIPipeDataSlot) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeVerticalNodeUI

getSlotName() - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable

getSlotNodes() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

getSlotTable(Collection<JIPipeDataSlotInfo>) - Static method in class org.hkijena.jipipe.utils.TooltipUtils

Creates a slot definition table.

getSlotType() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

getSlotType() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo

getSmallerMajor() - Method in class org.hkijena.jipipe.ui.grapheditor.connections.RectangularLine

getSmallerMinor() - Method in class org.hkijena.jipipe.ui.grapheditor.connections.RectangularLine

getSmoothing() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.Hessian2DAlgorithm

getSmoothing() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HessianSegmentation2DAlgorithm

getSortedAndFilteredData(Collection<T>, RankingFunction<T>, String[]) - Static method in class org.hkijena.jipipe.utils.RankedData

Creates a list of sorted ranked data

getSortedList(Collection<Class<? extends JIPipeData>>) - Static method in interface org.hkijena.jipipe.api.data.JIPipeData

Gets name sorted list of data classes

getSortedList(Set<JIPipeNodeInfo>) - Static method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeInfo

Gets a sorted list of algorithms

getSortOrderList() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SortAndExtractRoiByStatisticsAlgorithm

getSortOrderList() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.SortTableAlgorithm

getSource() - Method in class org.hkijena.jipipe.api.events.NodeConnectedEvent

getSource() - Method in class org.hkijena.jipipe.api.events.NodeDisconnectedEvent

getSource() - Method in class org.hkijena.jipipe.api.events.ParameterChangedEvent

getSource() - Method in class org.hkijena.jipipe.api.events.ParameterStructureChangedEvent

getSource() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccess

getSource() - Method in class org.hkijena.jipipe.api.history.EdgeConnectGraphHistorySnapshot

getSource() - Method in class org.hkijena.jipipe.api.history.EdgeDisconnectAllTargetsGraphHistorySnapshot

getSource() - Method in class org.hkijena.jipipe.api.history.EdgeDisconnectGraphHistorySnapshot

getSource() - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection.UserParameterDefinition

getSource() - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess

getSource() - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess

getSource() - Method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterAccess

Gets the object that holds the parameter

getSource() - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess

getSource() - Method in class org.hkijena.jipipe.extensions.parameters.collections.ListParameterItemParameterAccess

getSource() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterInputAccess

getSource() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterOutputAccess

getSource() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterParameterAccess

getSource() - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameterContentAccess

getSource() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterKeyAccess

getSource() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterValueAccess

getSource() - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTableCellAccess

getSource() - Method in class org.hkijena.jipipe.ui.components.SearchBox.SelectedEvent

getSourceColumnName() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData.IntegratingColumnOperationEntry

getSourceDocumentation(JIPipeParameterCollection) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree

Gets source documentation

getSourceDocumentationName(JIPipeParameterCollection) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree

Gets source name

getSourceKey(JIPipeParameterCollection) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree

Gets unique source key

getSourceNode(JIPipeParameterCollection) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree

Returns the node of a collection

getSourceOf(String) - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry

Returns the source that registered that data type

getSourceOf(Class<? extends JIPipeData>) - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry

Returns the source that registered that data type

getSourceOf(String) - Method in class org.hkijena.jipipe.api.registries.JIPipeNodeRegistry

Returns the source of a registered algorithm

getSourceSlot(JIPipeDataSlot) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

If exists, returns the output slot that provides data for the input slot Returns null if target is an output or no slot exists

getSourceUIOrder(JIPipeParameterCollection) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree

Gets source UI order

getSourceVisibility(JIPipeParameterCollection) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree

Gets source visibility

getSplashIcons() - Method in class org.hkijena.jipipe.extensions.clij2.CLIJExtension

getSplashIcons() - Method in class org.hkijena.jipipe.extensions.core.CoreExtension

getSplashIcons() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesExtension

getSplashIcons() - Method in class org.hkijena.jipipe.extensions.python.PythonExtension

getSplashIcons() - Method in interface org.hkijena.jipipe.JIPipeJavaExtension

Returns icons that will be displayed in the splash screen.

getSplitCharacter() - Method in class org.hkijena.jipipe.extensions.parameters.patterns.StringPatternExtraction

getSplitPickedIndex() - Method in class org.hkijena.jipipe.extensions.parameters.patterns.StringPatternExtraction

getStackAssignments() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackSplitterAlgorithm

getStackOrder() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter

getStackSizeAnnotation() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePropertiesToAnnotationAlgorithm

getStartAngleDegrees() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceRadial

getStartSlice() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.ZProjectorAlgorithm

getStartX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Crop2d

getStartX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Crop3d

getStartY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Crop2d

getStartY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Crop3d

getStartZ() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Crop3d

getStateId() - Method in class org.hkijena.jipipe.api.JIPipeProjectCache.State

getStateId() - Method in class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

Returns a unique identifier that represents the state of the algorithm.

getStateIdOf(JIPipeAlgorithm, List<JIPipeGraphNode>) - Method in class org.hkijena.jipipe.api.JIPipeProject

Returns the state ID of a graph node The state ID is a unique representation of how the algorithm's output was generated.

getStatistics(List<ResultsTableData.IntegratingColumnOperationEntry>, Set<String>) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Generates a new table that contains statistics.

getStatisticsParameters() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D

getStatus() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.utils.Hough_Circle

getStatus() - Method in class org.hkijena.jipipe.ui.events.RunUIWorkerProgressEvent

getStopSlice() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.ZProjectorAlgorithm

getStoragePath() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

Gets the storage path that is used during running the algorithm for saving the results This is not used during project creation

getStoragePath() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

The storage path is used in JIPipeRun to indicate where output data is written This is only used internally

getStringFromClipboard() - Static method in class org.hkijena.jipipe.utils.UIUtils

Returns a string from clipboard or an empty string

getStringPredicate() - Method in class org.hkijena.jipipe.extensions.parameters.predicates.StringOrDoublePredicate

getStringRepresentation() - Method in enum org.hkijena.jipipe.extensions.parameters.predicates.DoublePredicate.Mode

getStringValue() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.StringOrDouble

getSubFolder() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ListFiles

getSubFolder() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ListSubfolders

getSubPath() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ConcatenateByParameter

getSuffix() - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.TemporaryFileDataSource

getSuggestedName() - Method in class org.hkijena.jipipe.api.compartments.JIPipeExportedCompartment

getSupportedImageJDataTypes() - Method in class org.hkijena.jipipe.api.registries.JIPipeImageJAdapterRegistry

Returns all supported ImageJ data types

getSupportedJIPipeDataTypes() - Method in class org.hkijena.jipipe.api.registries.JIPipeImageJAdapterRegistry

Returns all supported JIPipe data types

getT() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.SliceIndex

getTabbedPane() - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane

getTabComponent() - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane.DocumentTab

getTabContaining(Component) - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane

Returns the tab that contains the specified content

getTabCount() - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane

getTabLabelShiftX(int, int, boolean) - Method in class org.hkijena.jipipe.utils.CustomTabbedPaneUI

Overridden to do nothing for the Java L&F.

getTabLabelShiftY(int, int, boolean) - Method in class org.hkijena.jipipe.utils.CustomTabbedPaneUI

Overridden to do nothing for the Java L&F.

getTable() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

getTable() - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultDataSlotPreviewUI

getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class org.hkijena.jipipe.ui.batchassistant.DataSlotTableUI.WrapperColumnHeaderRenderer

getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheDataSlotTableUI.WrapperColumnHeaderRenderer

getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheMultiDataSlotTableUI.MultiDataSlotTableColumnRenderer

getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class org.hkijena.jipipe.ui.cache.JIPipeDataCellRenderer

getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class org.hkijena.jipipe.ui.cache.JIPipeDataInfoCellRenderer

getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class org.hkijena.jipipe.ui.components.JIPipeComponentCellRenderer

getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeDataSlotTableColumnHeaderRenderer

getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeMergedDataSlotTableColumnHeaderRenderer

getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeNodeTableCellRenderer

getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeProjectCompartmentTableCellRenderer

getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeRowDataMergedTableCellRenderer

getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeRowDataTableCellRenderer

getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeRowIndexTableCellRenderer

getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeTraitTableCellRenderer

getTableModel() - Method in class org.hkijena.jipipe.ui.tableanalyzer.JIPipeTableEditor

getTableRegistry() - Method in class org.hkijena.jipipe.JIPipeDefaultRegistry

getTableRegistry() - Method in interface org.hkijena.jipipe.JIPipeRegistry

getTables() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.DefineTablesAlgorithm

getTabRunOverlay(int) - Method in class org.hkijena.jipipe.utils.CustomTabbedPaneUI

getTabs() - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane

getTabsContaining(Class<? extends Component>) - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane

Returns all tabs that contain components of provided type or components that inherit from it

getTarget() - Method in class org.hkijena.jipipe.api.events.NodeConnectedEvent

getTarget() - Method in class org.hkijena.jipipe.api.events.NodeDisconnectedEvent

getTarget() - Method in class org.hkijena.jipipe.api.history.EdgeConnectGraphHistorySnapshot

getTarget() - Method in class org.hkijena.jipipe.api.history.EdgeDisconnectGraphHistorySnapshot

getTarget() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.ContextAction

getTargetColumnName() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData.IntegratingColumnOperationEntry

getTargetGraph() - Method in class org.hkijena.jipipe.api.history.GraphChangedHistorySnapshot

getTargetSlots(JIPipeDataSlot) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Returns the list of input slots that are provided by the source slot Returns an empty set if the target is an input or no slot exists

getTargetSlots() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.SplitByAnnotation

getTempDirectory() - Method in class org.hkijena.jipipe.extensions.settings.RuntimeSettings

getTemplateDescription() - Method in class org.hkijena.jipipe.api.JIPipeProjectMetadata

getTemplateMatchingMethod() - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm

getTemporaryDocument() - Method in class org.hkijena.jipipe.ui.components.MarkdownReader

getTestBenchRun() - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBench

getText() - Method in class org.hkijena.jipipe.ui.components.FancyTextField

getText() - Method in class org.hkijena.jipipe.ui.components.SearchTextField

getTextField() - Method in class org.hkijena.jipipe.ui.components.FancyTextField

getTextField() - Method in class org.hkijena.jipipe.ui.components.SearchTextField

getThreadPool() - Method in class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

getThreshold() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Threshold

getThreshold() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.LocalMaxima2DAlgorithm

getThreshold() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.RemoveOutliersFilter2DAlgorithm

getThreshold() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm

getThreshold() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.ManualThreshold16U2DAlgorithm

getThreshold() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.ManualThreshold8U2DAlgorithm

getThreshold_intensity() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumZProjectionThresholdedBounded

getTightenedTo(PointRange, Point) - Static method in class org.hkijena.jipipe.utils.PointRange

Gets a point within the range that is closest to the target point

getTightenedTo(PointRange, PointRange) - Static method in class org.hkijena.jipipe.utils.PointRange

Gets a point within the range that is closest to the target point range

getTimestamp() - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestbenchSnapshot

getTitle() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData

getTitle() - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane.DocumentTab

getTitleAnnotation() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePropertiesToAnnotationAlgorithm

getTitleAnnotation() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter

getTitleAnnotation() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.ImagePlusFromFile

getTitleFilters() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ResultsTableFromGUI

getTitleFiltersOperation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ResultsTableFromGUI

getTitleLabel() - Method in class org.hkijena.jipipe.ui.components.FormPanel.GroupHeaderPanel

getToMaskAlgorithm() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ImageRoiProcessorAlgorithm

getToolBar() - Method in class org.hkijena.jipipe.ui.components.PlotReader

getTooltip(Object) - Method in class org.hkijena.jipipe.extensions.parameters.colors.ColorMapEnumItemInfo

getTooltip(Object) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DefaultEnumItemInfo

getTooltip(Object) - Method in interface org.hkijena.jipipe.extensions.parameters.primitives.EnumItemInfo

Extracts a custom tooltip for the enum value

getTop() - Method in class org.hkijena.jipipe.extensions.parameters.roi.Margin

getTrack() - Method in class org.hkijena.jipipe.ui.grapheditor.layout.MSTGraphAutoLayoutMethod.Node

getTraitColumns() - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable

getTraitColumns() - Method in class org.hkijena.jipipe.api.data.JIPipeMergedDataSlotTable

getTraitColumns() - Method in class org.hkijena.jipipe.api.data.JIPipeMergedExportedDataTable

getTraits() - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable.Row

getTransform() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AffineTransform2d

getTransform() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AffineTransform3d

getTransformation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyMath2DAlgorithm

getTransformation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyTransform2DAlgorithm

getTranslateX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Translate2d

getTranslateX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Translate3d

getTranslateY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Translate2d

getTranslateY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Translate3d

getTranslateZ() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Translate3d

getTree() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParametersUI

getTree() - Method in class org.hkijena.jipipe.ui.cache.JIPipeAlgorithmCacheBrowserUI

getTree() - Method in class org.hkijena.jipipe.ui.cache.JIPipeAlgorithmCacheTree

getTree() - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheBrowserUI

getTree() - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheTree

getTree() - Method in class org.hkijena.jipipe.ui.components.ParameterTreeUI

getTree() - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultAlgorithmTree

getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheStateTreeCellRenderer

getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class org.hkijena.jipipe.ui.components.ParameterTreeUI.Renderer

getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class org.hkijena.jipipe.ui.grapheditor.settings.JIPipeDataSlotTreeCellRenderer

getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultTreeCellRenderer

getUi() - Method in class org.hkijena.jipipe.ui.events.AlgorithmEvent

getUi() - Method in class org.hkijena.jipipe.ui.events.AlgorithmUIActionRequestedEvent

getUi() - Method in class org.hkijena.jipipe.ui.events.DefaultAlgorithmUIActionRequestedEvent

getUi() - Method in class org.hkijena.jipipe.ui.grapheditor.layout.MSTGraphAutoLayoutMethod.Node

getUIAlgorithmRegistry() - Method in class org.hkijena.jipipe.JIPipeDefaultRegistry

getUIAlgorithmRegistry() - Method in interface org.hkijena.jipipe.JIPipeRegistry

getUIDatatypeRegistry() - Method in class org.hkijena.jipipe.JIPipeDefaultRegistry

getUIDatatypeRegistry() - Method in interface org.hkijena.jipipe.JIPipeRegistry

getUiExcludedSubParameters() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node

getUIFor(ImageJDatatypeImporter) - Method in class org.hkijena.jipipe.ui.registries.JIPipeUIImageJDatatypeAdapterRegistry

Generates a UI for the importer

getUIForResultSlot(JIPipeProjectWorkbench, JIPipeDataSlot, JIPipeExportedDataTable.Row) - Method in class org.hkijena.jipipe.ui.registries.JIPipeUIDatatypeRegistry

Generates a UI for a result data slot

getUIImageJDatatypeAdapterRegistry() - Method in class org.hkijena.jipipe.JIPipeDefaultRegistry

getUIImageJDatatypeAdapterRegistry() - Method in interface org.hkijena.jipipe.JIPipeRegistry

getUIMenuServiceRegistry() - Method in class org.hkijena.jipipe.JIPipeDefaultRegistry

getUIMenuServiceRegistry() - Method in interface org.hkijena.jipipe.JIPipeRegistry

getUIOrder() - Method in class org.hkijena.jipipe.api.compartments.algorithms.CompartmentNodeTypeCategory

getUIOrder() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccess

getUIOrder() - Method in class org.hkijena.jipipe.api.nodes.categories.AnnotationsNodeTypeCategory

getUIOrder() - Method in class org.hkijena.jipipe.api.nodes.categories.DataSourceNodeTypeCategory

getUIOrder() - Method in class org.hkijena.jipipe.api.nodes.categories.FileSystemNodeTypeCategory

getUIOrder() - Method in class org.hkijena.jipipe.api.nodes.categories.ImagesNodeTypeCategory

getUIOrder() - Method in class org.hkijena.jipipe.api.nodes.categories.InternalNodeTypeCategory

getUIOrder() - Method in class org.hkijena.jipipe.api.nodes.categories.MiscellaneousNodeTypeCategory

getUIOrder() - Method in class org.hkijena.jipipe.api.nodes.categories.RoiNodeTypeCategory

getUIOrder() - Method in class org.hkijena.jipipe.api.nodes.categories.TableNodeTypeCategory

getUIOrder() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeTypeCategory

Categories are sorted by this value (lower value = first)

getUIOrder() - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess

getUIOrder() - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess

getUIOrder() - Method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterAccess

Controls how the parameter is ordered within the user interface

getUiOrder() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node

getUIOrder() - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess

getUIOrder() - Method in class org.hkijena.jipipe.extensions.parameters.collections.ListParameterItemParameterAccess

getUIOrder() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterInputAccess

getUIOrder() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterOutputAccess

getUIOrder() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterParameterAccess

getUIOrder() - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameterContentAccess

getUIOrder() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterKeyAccess

getUIOrder() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterValueAccess

getUIOrder() - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTableCellAccess

getUIParameterTypeRegistry() - Method in class org.hkijena.jipipe.JIPipeDefaultRegistry

getUIParameterTypeRegistry() - Method in interface org.hkijena.jipipe.JIPipeRegistry

getUISourceOrder(JIPipeParameterCollection) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree

Gets source UI order

getUnconnectedSlots() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

getUnhiddenRegisteredDataTypes() - Static method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

Returns a collection of all unhidden slot data types

getUnhiddenRegisteredDataTypes() - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry

Gets all data types that are not hidden

getUniqueKey(JIPipeParameterAccess) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree

Gets the unique key of an parameter access

getUniqueStringByDialog(Component, String, String, Predicate<String>) - Static method in class org.hkijena.jipipe.utils.UIUtils

Continuously asks for an unique string

getUpdateSiteDependencies() - Method in class org.hkijena.jipipe.api.JIPipeProjectMetadata

getUpdateSiteDependenciesParameter() - Method in class org.hkijena.jipipe.JIPipeJsonExtension

getUpdateSitesToAddAndActivate() - Method in class org.hkijena.jipipe.ui.ijupdater.JIPipeImageJPluginManager

getUrl() - Method in class org.hkijena.jipipe.JIPipeImageJUpdateSiteDependency

getUrls() - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.DownloadFilesDataSource

getUseOutlinePaintForWhiskers() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer

Returns the flag that, if true, causes the whiskers to be drawn using the series outline paint.

getUserHow() - Method in interface org.hkijena.jipipe.api.exceptions.UserFriendlyException

getUserHow() - Method in exception org.hkijena.jipipe.api.exceptions.UserFriendlyNullPointerException

getUserHow() - Method in exception org.hkijena.jipipe.api.exceptions.UserFriendlyRuntimeException

getUserHow() - Method in class org.hkijena.jipipe.api.JIPipeValidityReport.Message

getUserHow() - Method in class org.hkijena.jipipe.ui.components.UserFriendlyErrorUI.Entry

getUserSelectedMethod() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AutomaticThreshold

getUserWhat() - Method in interface org.hkijena.jipipe.api.exceptions.UserFriendlyException

getUserWhat() - Method in exception org.hkijena.jipipe.api.exceptions.UserFriendlyNullPointerException

getUserWhat() - Method in exception org.hkijena.jipipe.api.exceptions.UserFriendlyRuntimeException

getUserWhat() - Method in class org.hkijena.jipipe.api.JIPipeValidityReport.Message

getUserWhat() - Method in class org.hkijena.jipipe.ui.components.UserFriendlyErrorUI.Entry

getUserWhere() - Method in interface org.hkijena.jipipe.api.exceptions.UserFriendlyException

getUserWhere() - Method in exception org.hkijena.jipipe.api.exceptions.UserFriendlyNullPointerException

getUserWhere() - Method in exception org.hkijena.jipipe.api.exceptions.UserFriendlyRuntimeException

getUserWhere() - Method in class org.hkijena.jipipe.ui.components.UserFriendlyErrorUI.Entry

getUserWhy() - Method in interface org.hkijena.jipipe.api.exceptions.UserFriendlyException

getUserWhy() - Method in exception org.hkijena.jipipe.api.exceptions.UserFriendlyNullPointerException

getUserWhy() - Method in exception org.hkijena.jipipe.api.exceptions.UserFriendlyRuntimeException

getUserWhy() - Method in class org.hkijena.jipipe.api.JIPipeValidityReport.Message

getUserWhy() - Method in class org.hkijena.jipipe.ui.components.UserFriendlyErrorUI.Entry

getValue() - Method in class org.hkijena.jipipe.api.data.JIPipeAnnotation

getValue(String, Class<T>) - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection

Gets a parameter value

getValue() - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess

getValue() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyMath2DAlgorithm

getValue() - Method in class org.hkijena.jipipe.extensions.parameters.generators.IntegerRange

getValue() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.Pair

getValue() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DynamicEnumParameter

getValue() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.StringOrDouble

Returns the current value

getValue() - Method in class org.hkijena.jipipe.ui.components.SearchBox.SelectedEvent

getValue() - Method in class org.hkijena.jipipe.utils.MacroSetting

getValueAsDouble(int, int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Returns a table value as double

getValueAsDouble(int, String) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Returns a table value as double

getValueAsString(int, int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Returns a table value as string

getValueAsString(int, String) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Returns a table value as string

getValueAt(int, int) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

getValueAt(int, int) - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable

getValueAt(int, int) - Method in class org.hkijena.jipipe.api.data.JIPipeMergedDataSlotTable

getValueAt(int, int) - Method in class org.hkijena.jipipe.api.data.JIPipeMergedExportedDataTable

getValueAt(int, int) - Method in class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2D

getValueAt(int, int) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable

getValueAt(int, int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

getValueAt(int, int) - Method in class org.hkijena.jipipe.ui.batchassistant.DataSlotTableUI.WrapperTableModel

getValueAt(int, int) - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheDataSlotTableUI.WrapperTableModel

getValueAt(int, int) - Method in class org.hkijena.jipipe.ui.ijupdater.FileTableModel

getValueAxisLabel() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CategoryPlotData

getValueAxisLabel() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.HistogramPlotData

getValueB() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumImageAndScalar

getValueB() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumImageAndScalar

getValueClass() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.Pair

getValueReplacement() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2FloodFillDiamond

getValues() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DynamicSetParameter

getValueToReplace() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2FloodFillDiamond

getViewMode() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

getViewPort() - Method in class org.hkijena.jipipe.ui.components.ZoomFlatIconButton

getViewPort() - Method in class org.hkijena.jipipe.ui.components.ZoomIcon

getViewPort() - Method in class org.hkijena.jipipe.ui.components.ZoomLabel

getViewPort() - Method in class org.hkijena.jipipe.ui.events.ZoomChangedEvent

getVisibility() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccess

getVisibility() - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess

getVisibility() - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess

getVisibility() - Method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterAccess

Returns if the parameter should be visible to users or only stored to JSON

getVisibility() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node

getVisibility() - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess

getVisibility() - Method in class org.hkijena.jipipe.extensions.parameters.collections.ListParameterItemParameterAccess

getVisibility() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterInputAccess

getVisibility() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterOutputAccess

getVisibility() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterParameterAccess

getVisibility() - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameterContentAccess

getVisibility() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterKeyAccess

getVisibility() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterValueAccess

getVisibility() - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTableCellAccess

getVisibleCompartments() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Returns the list of additional compartments this algorithm is visible in.

getVisibleParameters() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterCollectionVisibilities

getWebsite() - Method in class org.hkijena.jipipe.api.JIPipeMetadata

getWebsite() - Method in class org.hkijena.jipipe.extensions.JIPipePrepackagedDefaultJavaExtension

getWebsite() - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension

getWeight() - Method in class org.hkijena.jipipe.ui.grapheditor.layout.MSTGraphAutoLayoutMethod.Edge

getWhiskerWidth() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer

Returns the width of the whiskers as fraction of the bar width.

getWidth() - Method in class org.hkijena.jipipe.extensions.parameters.roi.Margin

getWidthAnnotation() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePropertiesToAnnotationAlgorithm

getWindow() - Method in class org.hkijena.jipipe.ui.compat.RunSingleAlgorithmDialog

getWindow() - Method in class org.hkijena.jipipe.ui.events.WindowClosedEvent

getWindow() - Method in class org.hkijena.jipipe.ui.events.WindowOpenedEvent

getWindow() - Method in class org.hkijena.jipipe.ui.ijupdater.MissingUpdateSiteResolver

getWindow() - Method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWorkbench

getWindow() - Method in class org.hkijena.jipipe.ui.JIPipeProjectWorkbench

getWindow() - Method in interface org.hkijena.jipipe.ui.JIPipeWorkbench

Returns the window

getWindowsEvents() - Static method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWindow

getWindowsEvents() - Static method in class org.hkijena.jipipe.ui.JIPipeProjectWindow

getWorkbench() - Method in class org.hkijena.jipipe.ui.extension.MenuExtension

getWorkbench() - Method in class org.hkijena.jipipe.ui.JIPipeWorkbenchPanel

getWorkDirectory() - Method in class org.hkijena.jipipe.api.events.WorkDirectoryChangedEvent

getWorkDirectory() - Method in class org.hkijena.jipipe.api.JIPipeProject

Gets the folder where the project is currently working in

getWorkDirectory() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Returns the current work directory of this algorithm.

getWorker() - Method in class org.hkijena.jipipe.ui.events.RunUIWorkerFinishedEvent

getWorker() - Method in class org.hkijena.jipipe.ui.events.RunUIWorkerInterruptedEvent

getWorker() - Method in class org.hkijena.jipipe.ui.events.RunUIWorkerProgressEvent

getWorker() - Method in class org.hkijena.jipipe.ui.events.RunUIWorkerStartedEvent

getWrappedGraph() - Method in class org.hkijena.jipipe.api.grouping.GraphWrapperAlgorithm

getWrappedGraph() - Method in class org.hkijena.jipipe.api.grouping.parameters.NodeGroupContents

getxAxis() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformEqualCanvasSize2DAlgorithm

getxAxis() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformExpandCanvas2DAlgorithm

getxAxis() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale2DAlgorithm

getxAxis() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale3DAlgorithm

getxAxisLabel() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.XYPlotData

getyAxis() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformEqualCanvasSize2DAlgorithm

getyAxis() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformExpandCanvas2DAlgorithm

getyAxis() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale2DAlgorithm

getyAxis() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale3DAlgorithm

getyAxisLabel() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.XYPlotData

getZ() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.SliceIndex

getzAxis() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale3DAlgorithm

getZoom() - Method in interface org.hkijena.jipipe.ui.components.ZoomViewPort

getZoom() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

GraphAutoLayout - Enum in org.hkijena.jipipe.ui.grapheditor.layout

GraphAutoLayoutMethod - Interface in org.hkijena.jipipe.ui.grapheditor.layout

GraphCanvasUpdatedEvent - Class in org.hkijena.jipipe.ui.events

Triggered when a graph canvas was updated

GraphCanvasUpdatedEvent(JIPipeGraphCanvasUI) - Constructor for class org.hkijena.jipipe.ui.events.GraphCanvasUpdatedEvent

GraphChangedEvent - Class in org.hkijena.jipipe.api.events

Event is triggered when algorithm graph is changed

GraphChangedEvent(JIPipeGraph) - Constructor for class org.hkijena.jipipe.api.events.GraphChangedEvent

GraphChangedHistorySnapshot - Class in org.hkijena.jipipe.api.history

GraphChangedHistorySnapshot(JIPipeGraph, String) - Constructor for class org.hkijena.jipipe.api.history.GraphChangedHistorySnapshot

GraphCompartmentCopyNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard

GraphCompartmentCopyNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.GraphCompartmentCopyNodeUIContextAction

GraphCompartmentCutNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard

GraphCompartmentCutNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.GraphCompartmentCutNodeUIContextAction

GraphCompartmentPasteNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard

GraphCompartmentPasteNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.GraphCompartmentPasteNodeUIContextAction

GraphEditorUISettings - Class in org.hkijena.jipipe.extensions.settings

All settings for JIPipeGraphEditorUI

GraphEditorUISettings() - Constructor for class org.hkijena.jipipe.extensions.settings.GraphEditorUISettings

GraphHistoryChangedEvent - Class in org.hkijena.jipipe.api.events

Triggered when an JIPipeGraphHistory was changed

GraphHistoryChangedEvent(JIPipeGraphHistory) - Constructor for class org.hkijena.jipipe.api.events.GraphHistoryChangedEvent

GraphNodeParameterCollectionReference - Class in org.hkijena.jipipe.api.grouping.parameters

GraphNodeParameterCollectionReference() - Constructor for class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterCollectionReference

GraphNodeParameterEditorUI - Class in org.hkijena.jipipe.api.grouping.parameters

Editor for GraphNodeParameters

GraphNodeParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterEditorUI

Creates new instance

GraphNodeParameterReference - Class in org.hkijena.jipipe.api.grouping.parameters

References a parameter in a graph

GraphNodeParameterReference() - Constructor for class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReference

Creates a new empty instance

GraphNodeParameterReference(GraphNodeParameterReference) - Constructor for class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReference

Creates a copy

GraphNodeParameterReference(JIPipeParameterAccess, JIPipeParameterTree) - Constructor for class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReference

Instantiates with an existing access within a tree

GraphNodeParameterReferenceAccess - Class in org.hkijena.jipipe.api.grouping.parameters

A parameter access that references to another one, but hides the source

GraphNodeParameterReferenceAccess(GraphNodeParameterReference, JIPipeParameterTree, JIPipeParameterCollection, boolean) - Constructor for class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccess

Creates a new instance

GraphNodeParameterReferenceAccessGroup - Class in org.hkijena.jipipe.api.grouping.parameters

Contains GraphNodeParameterReferenceAccess

GraphNodeParameterReferenceAccessGroup(GraphNodeParameterReferenceGroup) - Constructor for class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccessGroup

Creates a new instance

GraphNodeParameterReferenceAccessGroupList - Class in org.hkijena.jipipe.api.grouping.parameters

Contains GraphNodeParameterReferenceAccess

GraphNodeParameterReferenceAccessGroupList(GraphNodeParameters, JIPipeParameterTree, boolean) - Constructor for class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccessGroupList

Creates a new instance

GraphNodeParameterReferenceGroup - Class in org.hkijena.jipipe.api.grouping.parameters

A list of GraphNodeParameterReference.

GraphNodeParameterReferenceGroup() - Constructor for class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceGroup

Creates a new instance

GraphNodeParameterReferenceGroup(GraphNodeParameterReferenceGroup) - Constructor for class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceGroup

Creates a copy

GraphNodeParameterReferenceGroupUI - Class in org.hkijena.jipipe.api.grouping.parameters

UI for GraphNodeParameterReferenceGroup

GraphNodeParameterReferenceGroupUI(GraphNodeParametersUI, GraphNodeParameterReferenceGroup) - Constructor for class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceGroupUI

GraphNodeParameterReferenceGroupUI.GroupMetadataEditor - Class in org.hkijena.jipipe.api.grouping.parameters

Edits name and description of a GraphNodeParameterReferenceGroup

GraphNodeParameterReferenceUI - Class in org.hkijena.jipipe.api.grouping.parameters

Editor for GraphNodeParameterReference

GraphNodeParameterReferenceUI(GraphNodeParameterReferenceGroupUI, GraphNodeParameterReference) - Constructor for class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceUI

Creates a new instance

GraphNodeParameters - Class in org.hkijena.jipipe.api.grouping.parameters

Contains a list of GraphNodeParameterReferenceGroup and GraphNodeParameterCollectionReference Stores references to parameters within an JIPipeGraph

GraphNodeParameters() - Constructor for class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameters

Creates a new instance

GraphNodeParameters(GraphNodeParameters) - Constructor for class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameters

Makes a copy

GraphNodeParametersUI - Class in org.hkijena.jipipe.api.grouping.parameters

Editor component for GraphNodeParameters

GraphNodeParametersUI(JIPipeWorkbench, GraphNodeParameters) - Constructor for class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParametersUI

GraphUtils - Class in org.hkijena.jipipe.utils

Helper class for graph

GraphWrapperAlgorithm - Class in org.hkijena.jipipe.api.grouping

An algorithm that wraps another algorithm graph

GraphWrapperAlgorithm(JIPipeNodeInfo, JIPipeGraph) - Constructor for class org.hkijena.jipipe.api.grouping.GraphWrapperAlgorithm

GraphWrapperAlgorithm(GraphWrapperAlgorithm) - Constructor for class org.hkijena.jipipe.api.grouping.GraphWrapperAlgorithm

Copies the algorithm

GraphWrapperAlgorithmInput - Class in org.hkijena.jipipe.api.grouping

GraphWrapperAlgorithmInput(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.api.grouping.GraphWrapperAlgorithmInput

GraphWrapperAlgorithmInput(GraphWrapperAlgorithmInput) - Constructor for class org.hkijena.jipipe.api.grouping.GraphWrapperAlgorithmInput

GraphWrapperAlgorithmOutput - Class in org.hkijena.jipipe.api.grouping

GraphWrapperAlgorithmOutput(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.api.grouping.GraphWrapperAlgorithmOutput

GraphWrapperAlgorithmOutput(GraphWrapperAlgorithmOutput) - Constructor for class org.hkijena.jipipe.api.grouping.GraphWrapperAlgorithmOutput

GRAY - Static variable in class org.hkijena.jipipe.utils.ModernMetalTheme

GreyscalePixelsGenerator - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics

Algorithm that generates ResultsTableData as histogram

GreyscalePixelsGenerator(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics.GreyscalePixelsGenerator

Creates a new instance

GreyscalePixelsGenerator(GreyscalePixelsGenerator) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics.GreyscalePixelsGenerator

Creates a copy

gridToRealLocation(Point, double) - Method in enum org.hkijena.jipipe.ui.grapheditor.JIPipeGraphViewMode

gridToRealSize(Dimension, double) - Method in enum org.hkijena.jipipe.ui.grapheditor.JIPipeGraphViewMode

groupByMenuPath(Collection<Class<? extends JIPipeData>>) - Static method in interface org.hkijena.jipipe.api.data.JIPipeData

Groups the data types by their menu path

groupByMenuPaths(Set<JIPipeNodeInfo>) - Static method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeInfo

Gets the registered algorithms, grouped by their menu paths

groupByPosition(boolean, boolean, boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData

Groups the ROI by their image positions

groupByReferenceImage() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData

Groups the ROI by their reference image

groupDataByMetadata(Map<String, JIPipeDataSlot>) - Method in interface org.hkijena.jipipe.api.nodes.JIPipeDataBatchAlgorithm

Generate the initial data batches based on the slot map

groupDataByMetadata(Map<String, JIPipeDataSlot>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm

groupDataByMetadata(Map<String, JIPipeDataSlot>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm

GroupHeaderPanel(String, Icon) - Constructor for class org.hkijena.jipipe.ui.components.FormPanel.GroupHeaderPanel

GroupingExtension - Class in org.hkijena.jipipe.api.grouping

Extension for anything that is related to GraphWrapperAlgorithm

GroupingExtension() - Constructor for class org.hkijena.jipipe.api.grouping.GroupingExtension

GroupMetadataEditor(GraphNodeParameterReferenceGroupUI, GraphNodeParameterReferenceGroup) - Constructor for class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceGroupUI.GroupMetadataEditor

GroupNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu

GroupNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.GroupNodeUIContextAction

H

handleDefaultAction() - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeDefaultResultDataSlotRowUI

handleDefaultAction() - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultDataSlotRowUI

Action that is triggered when the user double-clicks on the entry in the table

hasDataType(Class<? extends JIPipeData>) - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry

Returns true if the specified data type class is registered

hasDatatypeWithId(String) - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry

Returns true if there is a data type with given ID

hasDefaultConstructor(Class<?>) - Static method in class org.hkijena.jipipe.utils.ReflectionUtils

Returns true if the class has a default constructor

hasEditorFor(Class<?>) - Method in class org.hkijena.jipipe.ui.registries.JIPipeUIParameterTypeRegistry

Returns true if there is an editor for the parameter

hashCode() - Method in class org.hkijena.jipipe.api.data.JIPipeAnnotation

hashCode() - Method in class org.hkijena.jipipe.api.data.JIPipeDataInfo

hashCode() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo

hashCode() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReference

hashCode() - Method in class org.hkijena.jipipe.api.JIPipeProjectCache.State

hashCode() - Method in class org.hkijena.jipipe.api.JIPipeProjectTemplate

hashCode() - Method in class org.hkijena.jipipe.api.nodes.JIPipeDataBatchKey

hashCode() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.SliceIndex

hashCode() - Method in class org.hkijena.jipipe.extensions.parameters.predicates.DoublePredicate

hashCode() - Method in class org.hkijena.jipipe.extensions.parameters.predicates.PathPredicate

hashCode() - Method in class org.hkijena.jipipe.extensions.parameters.predicates.StringPredicate

hashCode() - Method in class org.hkijena.jipipe.extensions.parameters.references.JIPipeDataInfoRef

hashCode() - Method in class org.hkijena.jipipe.extensions.parameters.scripts.ScriptParameter

hasInputSlot(String) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

Returns true if there is an input slot with name

hasInputSlot(String) - Method in interface org.hkijena.jipipe.api.data.JIPipeSlotConfiguration

Return true if there is an input slot with given name

hasInputSlot(String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Returns true if the algorithm contains an input slot with given name.

hasNodeInfoWithId(String) - Method in class org.hkijena.jipipe.api.registries.JIPipeNodeRegistry

Returns true if the algorithm ID already exists

hasOutputSlot(String) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

Returns true if there is an output slot with name

hasOutputSlot(String) - Method in interface org.hkijena.jipipe.api.data.JIPipeSlotConfiguration

Return true if there is an output slot with given name

hasOutputSlot(String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Returns true if the algorithm contains an output slot with given name.

Hessian2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math

Wrapper around EDM

Hessian2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.Hessian2DAlgorithm

Instantiates a new node type.

Hessian2DAlgorithm(Hessian2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.Hessian2DAlgorithm

Instantiates a new node type.

HessianSegmentation2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold

Segments using a Hessian

HessianSegmentation2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HessianSegmentation2DAlgorithm

HessianSegmentation2DAlgorithm(HessianSegmentation2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HessianSegmentation2DAlgorithm

Copies the algorithm

hexStringToColor(String) - Static method in class org.hkijena.jipipe.utils.StringUtils

Converts a hex color string #RRGGBB or #RRGGBBAA to a color

hideSplash() - Method in class org.hkijena.jipipe.ui.components.SplashScreen

HistogramGenerator - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics

Algorithm that generates ResultsTableData as histogram

HistogramGenerator(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics.HistogramGenerator

Creates a new instance

HistogramGenerator(HistogramGenerator) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics.HistogramGenerator

Creates a copy

HistogramGenerator.MultiChannelMode - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics

Available modes that determine which greyscale value is generated if a multi-channel image is provided

HistogramPlotData - Class in org.hkijena.jipipe.extensions.plots.datatypes

Contains data to generate a histogram plot

HistogramPlotData() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.HistogramPlotData

Creates a new instance

HistogramPlotData(HistogramPlotData) - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.HistogramPlotData

Creates a copy

HistogramPlotData.HistogramType_ - Enum in org.hkijena.jipipe.extensions.plots.datatypes

Available histogram types

Hough_Circle - Class in org.hkijena.jipipe.extensions.imagejalgorithms.utils

Hough_Circle() - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.utils.Hough_Circle

HoughSegmentation2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold

Segments using a Hough circle transform

HoughSegmentation2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm

HoughSegmentation2DAlgorithm(HoughSegmentation2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm

Copies the algorithm

HoverHelpEvent(MarkdownDocument) - Constructor for class org.hkijena.jipipe.ui.components.FormPanel.HoverHelpEvent

Creates a new instance

HyperstackDimension - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.ij1

HyperstackDimensionPair - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1

HyperstackDimensionPair() - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.HyperstackDimensionPair

HyperstackDimensionPair(HyperstackDimension, HyperstackDimension) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.HyperstackDimensionPair

HyperstackDimensionPair(Pair<HyperstackDimension, HyperstackDimension>) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.HyperstackDimensionPair

HyperstackDimensionPair.List - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1

I

ICON_FROM_RESOURCES_CACHE - Static variable in class org.hkijena.jipipe.utils.UIUtils

ID - Static variable in class org.hkijena.jipipe.extensions.clij2.CLIJSettings

ID - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesSettings

ID - Static variable in class org.hkijena.jipipe.extensions.settings.ExtensionSettings

ID - Static variable in class org.hkijena.jipipe.extensions.settings.FileChooserSettings

ID - Static variable in class org.hkijena.jipipe.extensions.settings.GeneralUISettings

ID - Static variable in class org.hkijena.jipipe.extensions.settings.GraphEditorUISettings

ID - Static variable in class org.hkijena.jipipe.extensions.settings.ProjectsSettings

ID - Static variable in class org.hkijena.jipipe.extensions.settings.RuntimeSettings

IGNORE_CUSTOM - Static variable in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree

Whether to ignore all custom parameters

IGNORE_REFLECTION - Static variable in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree

Whether to ignore all reflection parameters

IJProgressAdapter - Class in org.hkijena.jipipe.ui.ijupdater

Adapter between JIPipe and ImageJ progress implementations

IJProgressAdapter() - Constructor for class org.hkijena.jipipe.ui.ijupdater.IJProgressAdapter

IlluminationCorrection2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast

Applies illumination correction

IlluminationCorrection2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast.IlluminationCorrection2DAlgorithm

IlluminationCorrection2DAlgorithm(IlluminationCorrection2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast.IlluminationCorrection2DAlgorithm

Copies the algorithm

IMAGE_TYPES - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesExtension

IMAGE_TYPES_COLOR - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesExtension

IMAGE_TYPES_COLOR_8U - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesExtension

IMAGE_TYPES_COLOR_RGB - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesExtension

IMAGE_TYPES_GREYSCALE - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesExtension

IMAGE_TYPES_GREYSCALE_16U - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesExtension

IMAGE_TYPES_GREYSCALE_32F - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesExtension

IMAGE_TYPES_GREYSCALE_8U - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesExtension

IMAGE_TYPES_GREYSCALE_MASK - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesExtension

ImageCalculator2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math

Wrapper around ImageProcessor

ImageCalculator2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ImageCalculator2DAlgorithm

Instantiates a new node type.

ImageCalculator2DAlgorithm(ImageCalculator2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ImageCalculator2DAlgorithm

Instantiates a new node type.

ImageCalculator2DAlgorithm.Operand - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math

Determines the order of input images

ImageCalculator2DAlgorithm.Operation - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math

Available math operations

ImageDataPreviewUI - Class in org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis

ImageDataPreviewUI(JTable) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImageDataPreviewUI

Creates a new renderer

ImageDataSlotRowUI - Class in org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis

Result UI for ImagePlus data

ImageDataSlotRowUI(JIPipeProjectWorkbench, JIPipeDataSlot, JIPipeExportedDataTable.Row) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImageDataSlotRowUI

ImageJAlgorithmsExtension - Class in org.hkijena.jipipe.extensions.imagejalgorithms

Extension that adds ImageJ2 algorithms

ImageJAlgorithmsExtension() - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ImageJAlgorithmsExtension

ImageJDatatypeAdapter - Interface in org.hkijena.jipipe.api.compat

Interface that contains functions that allow conversion between JIPipe and ImageJ data type

ImageJDatatypeImporter - Class in org.hkijena.jipipe.api.compat

Runs a ImageJDatatypeAdapter import operation.

ImageJDatatypeImporter(ImageJDatatypeAdapter) - Constructor for class org.hkijena.jipipe.api.compat.ImageJDatatypeImporter

ImageJDatatypeImporterUI - Class in org.hkijena.jipipe.ui.compat

User interface around an ImageJDatatypeAdapter that

ImageJDatatypeImporterUI(ImageJDatatypeImporter) - Constructor for class org.hkijena.jipipe.ui.compat.ImageJDatatypeImporterUI

ImageJDataTypesExtension - Class in org.hkijena.jipipe.extensions.imagejdatatypes

Provides ImageJ data types

ImageJDataTypesExtension() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesExtension

ImageJDataTypesSettings - Class in org.hkijena.jipipe.extensions.imagejdatatypes

ImageJDataTypesSettings() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesSettings

ImageJMacro - Class in org.hkijena.jipipe.extensions.parameters.scripts

Encapsulates ImageJ macro code to be detected by the parameter system

ImageJMacro() - Constructor for class org.hkijena.jipipe.extensions.parameters.scripts.ImageJMacro

ImageJMacro(ImageJMacro) - Constructor for class org.hkijena.jipipe.extensions.parameters.scripts.ImageJMacro

ImageJUtils - Class in org.hkijena.jipipe.extensions.imagejalgorithms.utils

Utility functions for ImageJ

ImagePlus2DColor8UData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.color

8-bit color 2D image

ImagePlus2DColor8UData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.color.ImagePlus2DColor8UData

ImagePlus2DColorData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.color

Colored 2D image

ImagePlus2DColorData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.color.ImagePlus2DColorData

ImagePlus2DColorRGBData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.color

RGB colored 2D image

ImagePlus2DColorRGBData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.color.ImagePlus2DColorRGBData

ImagePlus2DData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2

2D image

ImagePlus2DData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.ImagePlus2DData

ImagePlus2DGreyscale16UData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale

16-bit greyscale 2D image

ImagePlus2DGreyscale16UData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale.ImagePlus2DGreyscale16UData

ImagePlus2DGreyscale32FData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale

32 bit float greyscale 2D image

ImagePlus2DGreyscale32FData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale.ImagePlus2DGreyscale32FData

ImagePlus2DGreyscale8UData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale

8-bit greyscale 2D image

ImagePlus2DGreyscale8UData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale.ImagePlus2DGreyscale8UData

ImagePlus2DGreyscaleData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale

Greyscale 2D image

ImagePlus2DGreyscaleData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale.ImagePlus2DGreyscaleData

ImagePlus2DGreyscaleMaskData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale

8-bit mask 2D image

ImagePlus2DGreyscaleMaskData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale.ImagePlus2DGreyscaleMaskData

ImagePlus3DColor8UData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.color

8-bit color 3D image

ImagePlus3DColor8UData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.color.ImagePlus3DColor8UData

ImagePlus3DColorData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.color

Color 3D image

ImagePlus3DColorData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.color.ImagePlus3DColorData

ImagePlus3DColorRGBData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.color

RGB color 3D image

ImagePlus3DColorRGBData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.color.ImagePlus3DColorRGBData

ImagePlus3DData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3

3D image

ImagePlus3DData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.ImagePlus3DData

ImagePlus3DGreyscale16UData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale

16-bit greyscale 3D image

ImagePlus3DGreyscale16UData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale.ImagePlus3DGreyscale16UData

ImagePlus3DGreyscale32FData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale

32-bit floating point greyscale 3D image

ImagePlus3DGreyscale32FData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale.ImagePlus3DGreyscale32FData

ImagePlus3DGreyscale8UData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale

8-bit greyscale 3D image

ImagePlus3DGreyscale8UData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale.ImagePlus3DGreyscale8UData

ImagePlus3DGreyscaleData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale

Greyscale 3D image

ImagePlus3DGreyscaleData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale.ImagePlus3DGreyscaleData

ImagePlus3DGreyscaleMaskData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale

8-bit mask 3D image

ImagePlus3DGreyscaleMaskData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale.ImagePlus3DGreyscaleMaskData

ImagePlus4DColor8UData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.color

8-bit color 4D image

ImagePlus4DColor8UData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.color.ImagePlus4DColor8UData

ImagePlus4DColorData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.color

Color 4D image

ImagePlus4DColorData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.color.ImagePlus4DColorData

ImagePlus4DColorRGBData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.color

RGB color 4D image

ImagePlus4DColorRGBData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.color.ImagePlus4DColorRGBData

ImagePlus4DData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4

4D image

ImagePlus4DData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.ImagePlus4DData

ImagePlus4DGreyscale16UData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale

16-bit greyscale 4D image

ImagePlus4DGreyscale16UData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale.ImagePlus4DGreyscale16UData

ImagePlus4DGreyscale32FData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale

32-bit floating point greyscale 4D image

ImagePlus4DGreyscale32FData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale.ImagePlus4DGreyscale32FData

ImagePlus4DGreyscale8UData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale

8-bit greyscale 4D image

ImagePlus4DGreyscale8UData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale.ImagePlus4DGreyscale8UData

ImagePlus4DGreyscaleData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale

Greyscale 4D image

ImagePlus4DGreyscaleData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale.ImagePlus4DGreyscaleData

ImagePlus4DGreyscaleMaskData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale

Mask 4D image

ImagePlus4DGreyscaleMaskData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale.ImagePlus4DGreyscaleMaskData

ImagePlus5DColor8UData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.color

8-bit color 5D image

ImagePlus5DColor8UData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.color.ImagePlus5DColor8UData

ImagePlus5DColorData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.color

Color 5D image

ImagePlus5DColorData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.color.ImagePlus5DColorData

ImagePlus5DColorRGBData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.color

RGB color 5D image

ImagePlus5DColorRGBData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.color.ImagePlus5DColorRGBData

ImagePlus5DData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5

5D image

ImagePlus5DData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.ImagePlus5DData

ImagePlus5DGreyscale16UData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale

16-bit greyscale 5D image

ImagePlus5DGreyscale16UData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale.ImagePlus5DGreyscale16UData

ImagePlus5DGreyscale32FData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale

32-bit floating point greyscale image

ImagePlus5DGreyscale32FData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale.ImagePlus5DGreyscale32FData

ImagePlus5DGreyscale8UData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale

8-bit greyscale 5D image

ImagePlus5DGreyscale8UData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale.ImagePlus5DGreyscale8UData

ImagePlus5DGreyscaleData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale

Greyscale 5D image

ImagePlus5DGreyscaleData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale.ImagePlus5DGreyscaleData

ImagePlus5DGreyscaleMaskData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale

Mask 5D image

ImagePlus5DGreyscaleMaskData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale.ImagePlus5DGreyscaleMaskData

ImagePlusColor8UData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.color

8-bit color image without dimension.

ImagePlusColor8UData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.color.ImagePlusColor8UData

ImagePlusColorData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.color

Colored image without dimension.

ImagePlusColorData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.color.ImagePlusColorData

ImagePlusColorRGBData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.color

RGB colored image without dimension.

ImagePlusColorRGBData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.color.ImagePlusColorRGBData

ImagePlusData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes

ImageJ image

ImagePlusData(Path) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ImagePlusData

Initializes the data from a folder containing a TIFF file

ImagePlusData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ImagePlusData

ImagePlusDataImporterUI - Class in org.hkijena.jipipe.extensions.imagejdatatypes.compat

Imports an ImagePlus

ImagePlusDataImporterUI(ImageJDatatypeImporter) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ImagePlusDataImporterUI

ImagePlusDataToCLIJImageDataConverter - Class in org.hkijena.jipipe.extensions.clij2.datatypes

Converter from ImagePlusData to CLIJImageData

ImagePlusDataToCLIJImageDataConverter() - Constructor for class org.hkijena.jipipe.extensions.clij2.datatypes.ImagePlusDataToCLIJImageDataConverter

ImagePlusFFT2DData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft

2D image in frequency space

ImagePlusFFT2DData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft.ImagePlusFFT2DData

Creates a new instance

ImagePlusFFT3DData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft

3D image in frequency space

ImagePlusFFT3DData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft.ImagePlusFFT3DData

Creates a new instance

ImagePlusFFT4DData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft

4D image in frequency space

ImagePlusFFT4DData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft.ImagePlusFFT4DData

Creates a new instance

ImagePlusFFT5DData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft

5D image in frequency space

ImagePlusFFT5DData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft.ImagePlusFFT5DData

Creates a new instance

ImagePlusFFTData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft

Image in frequency space

ImagePlusFFTData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft.ImagePlusFFTData

Creates a new instance

ImagePlusFromFile - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datasources

Loads an image data from a file via IJ.openFile()

ImagePlusFromFile(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.ImagePlusFromFile

ImagePlusFromFile(ImagePlusFromFile) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.ImagePlusFromFile

Copies the algorithm

ImagePlusFromGUI - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io

Imports ImagePlusData from the GUI

ImagePlusFromGUI(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ImagePlusFromGUI

ImagePlusFromGUI(ImagePlusFromGUI) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ImagePlusFromGUI

ImagePlusGreyscale16UData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale

16-bit greyscale image without dimension.

ImagePlusGreyscale16UData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale.ImagePlusGreyscale16UData

ImagePlusGreyscale32FData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale

32 bit float greyscale image without dimension.

ImagePlusGreyscale32FData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale.ImagePlusGreyscale32FData

ImagePlusGreyscale8UData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale

8-bit greyscale image without dimension.

ImagePlusGreyscale8UData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale.ImagePlusGreyscale8UData

ImagePlusGreyscaleData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale

Greyscale image without dimension.

ImagePlusGreyscaleData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale.ImagePlusGreyscaleData

ImagePlusGreyscaleMaskData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale

8-bit mask without dimension.

ImagePlusGreyscaleMaskData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale.ImagePlusGreyscaleMaskData

ImagePlusToGUI - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io

Imports ImagePlusData from the GUI

ImagePlusToGUI(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ImagePlusToGUI

ImagePlusToGUI(ImagePlusToGUI) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ImagePlusToGUI

ImagePlusToOMEImageTypeConverter - Class in org.hkijena.jipipe.extensions.imagejdatatypes.algorithms

ImagePlusToOMEImageTypeConverter() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePlusToOMEImageTypeConverter

ImagePropertiesToAnnotationAlgorithm - Class in org.hkijena.jipipe.extensions.imagejdatatypes.algorithms

Adds data annotations that contain the image properties

ImagePropertiesToAnnotationAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePropertiesToAnnotationAlgorithm

Creates a new instance

ImagePropertiesToAnnotationAlgorithm(ImagePropertiesToAnnotationAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePropertiesToAnnotationAlgorithm

Creates a copy

ImageRoiProcessorAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

An algorithm that processes ROIListData to or ROIListData and ImagePlusData to the output data

ImageRoiProcessorAlgorithm(JIPipeNodeInfo, Class<? extends JIPipeData>, String) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ImageRoiProcessorAlgorithm

Creates a new instance

ImageRoiProcessorAlgorithm(ImageRoiProcessorAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ImageRoiProcessorAlgorithm

Creates a copy

ImagesNodeTypeCategory - Class in org.hkijena.jipipe.api.nodes.categories

ImagesNodeTypeCategory() - Constructor for class org.hkijena.jipipe.api.nodes.categories.ImagesNodeTypeCategory

ImageStatisticsSetParameter - Class in org.hkijena.jipipe.extensions.imagejdatatypes.util.measure

A DynamicSetParameter that contains image statistics measurements.

ImageStatisticsSetParameter() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.ImageStatisticsSetParameter

ImageStatisticsSetParameter(ImageStatisticsSetParameter) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.ImageStatisticsSetParameter

ImageStatisticsSetParameter(Set<Measurement>) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.ImageStatisticsSetParameter

ImageTypeConverter - Class in org.hkijena.jipipe.extensions.imagejdatatypes.algorithms

Converts ImageJ data type into each other

ImageTypeConverter(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImageTypeConverter

Creates a new instance

ImageTypeConverter(ImageTypeConverter) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImageTypeConverter

Copies the algorithm

ImgPlusDataImageJAdapter - Class in org.hkijena.jipipe.extensions.imagejdatatypes.compat

Adapter between ImagePlus and ImagePlusData

ImgPlusDataImageJAdapter(Class<? extends ImagePlusData>) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ImgPlusDataImageJAdapter

ImplicitImageTypeConverter - Class in org.hkijena.jipipe.extensions.imagejdatatypes.algorithms

An implicit converter between ImagePlusData types

ImplicitImageTypeConverter(Class<? extends JIPipeData>, Class<? extends JIPipeData>) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImplicitImageTypeConverter

ImplicitPathTypeConverter - Class in org.hkijena.jipipe.extensions.filesystem.algorithms

Converts between the PathData types (non-trivial conversions)

ImplicitPathTypeConverter(Class<? extends JIPipeData>, Class<? extends JIPipeData>) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ImplicitPathTypeConverter

ImplicitResultsTableDataConverter - Class in org.hkijena.jipipe.extensions.annotation.algorithms

Converts ResultsTableData to AnnotationTableData

ImplicitResultsTableDataConverter() - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.ImplicitResultsTableDataConverter

ImportCompartmentGraphHistorySnapshot - Class in org.hkijena.jipipe.api.history

ImportCompartmentGraphHistorySnapshot(JIPipeProject, JIPipeProjectCompartment) - Constructor for class org.hkijena.jipipe.api.history.ImportCompartmentGraphHistorySnapshot

importData(PlotDataSeries) - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotBuilderUI

Adds data into the data storage

importData(TableModel, String) - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotBuilderUI

Imports data from a table model

importExistingPlot(PlotData) - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotBuilderUI

Imports an existing plot data into this builder.

importFromImageJ(String) - Method in interface org.hkijena.jipipe.api.compat.ImageJDatatypeAdapter

Imports JIPipe data from an ImageJ window

importFromImageJ(String) - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageDataImageJAdapter

importFromImageJ(String) - Method in class org.hkijena.jipipe.extensions.filesystem.compat.PathDataImageJAdapter

importFromImageJ(String) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ImgPlusDataImageJAdapter

importFromImageJ(String) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.OMEImageDataImageJAdapter

importFromImageJ(String) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ResultsTableDataImageJAdapter

importFromImageJ(String) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ROIDataImageJAdapter

importROI(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ROIDataSlotRowUI

Imports and displays a ROI on the current image

importTableFromCSV(Path, JIPipeProjectWorkbench) - Static method in class org.hkijena.jipipe.ui.tableanalyzer.JIPipeTableEditor

Imports a table from CSV and creates a new JIPipeTableEditor tab

INACTIVE_CONTROL_TEXT_COLOR - Static variable in class org.hkijena.jipipe.utils.ModernMetalTheme

include(RowFilter.Entry<? extends TableModel, ? extends Integer>) - Method in class org.hkijena.jipipe.ui.components.SearchTextFieldTableRowFilter

include(RowFilter.Entry<? extends TableModel, ? extends Integer>) - Method in class org.hkijena.jipipe.ui.ijupdater.FileTableModelFilter

indented - Variable in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog

Index() - Constructor for class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData.Index

Creates a new instance.

Index(int, int) - Constructor for class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData.Index

Creates a new instance and initializes it

InheritanceConversionEditorUI - Class in org.hkijena.jipipe.ui.components

Editor for an inheritance conversion stored in an JIPipeDataSlotInfo

InheritanceConversionEditorUI(Map<JIPipeDataInfo, JIPipeDataInfo>) - Constructor for class org.hkijena.jipipe.ui.components.InheritanceConversionEditorUI

inheritedSlot() - Method in class org.hkijena.jipipe.api.nodes.DefaultJIPipeOutputSlot

InheritedSlotListCellRenderer - Class in org.hkijena.jipipe.ui.components

Renders an available entry for inherited slot in JIPipeDataSlotInfo

InheritedSlotListCellRenderer(JIPipeGraphNode) - Constructor for class org.hkijena.jipipe.ui.components.InheritedSlotListCellRenderer

initialise(Graphics2D, Rectangle2D, CategoryPlot, int, PlotRenderingInfo) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer

Initialises the renderer.

initialize() - Method in class org.hkijena.jipipe.JIPipeRunAlgorithmCommand

initializeAddDataSourceMenu(JIPipeGraphEditorUI, JMenu, Set<JIPipeNodeInfo>) - Static method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCompartmentUI

Initializes a menu that adds data sources

initializeAddNodesMenus() - Method in class org.hkijena.jipipe.ui.compartments.JIPipeCompartmentGraphUI

Initializes the "Add nodes" area

initializeAddNodesMenus(JIPipeGraphEditorUI, JMenuBar, Set<JIPipeNodeInfo>) - Static method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCompartmentUI

Initializes the "Add nodes" menus

initializeCLIJ(Context, boolean) - Static method in class org.hkijena.jipipe.extensions.clij2.CLIJSettings

Initializes CLIJ based on the settings

initializeCommonActions() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

Initializes the tool bar

initializeMenuForCategory(JIPipeGraphEditorUI, JMenu, JIPipeNodeTypeCategory, Set<JIPipeNodeInfo>) - Static method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCompartmentUI

Initializes a menu for one algorithm category

InputSlotMapParameterCollection - Class in org.hkijena.jipipe.extensions.parameters.collections

Parameter that holds a value for each data slot

InputSlotMapParameterCollection(Class<?>, JIPipeGraphNode, Supplier<Object>, boolean) - Constructor for class org.hkijena.jipipe.extensions.parameters.collections.InputSlotMapParameterCollection

Creates a new instance

insertNode(String, JIPipeGraphNode, String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Inserts an algorithm into the graph

insertNode(JIPipeGraphNode, String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Inserts an algorithm into the graph.

insertUpdate(DocumentEvent) - Method in class org.hkijena.jipipe.ui.components.DocumentChangeListener

installContextActionsInto(JToolBar, Set<JIPipeNodeUI>, List<NodeUIContextAction>, JIPipeGraphCanvasUI) - Static method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

installCustomTheme() - Static method in class org.hkijena.jipipe.utils.UIUtils

Installs modifications to the Metal look & feel used by JIPipe

installDefaults() - Method in class org.hkijena.jipipe.utils.CustomTabbedPaneUI

installEvents() - Method in class org.hkijena.jipipe.api.registries.JIPipeNodeRegistry

Install registration events.

installExtension(JIPipeWorkbench, JIPipeJsonExtension, boolean, boolean) - Static method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWindow

Installs a loaded project

installExtensionFromFile(JIPipeWorkbench, Path, boolean, boolean) - Static method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWindow

Loads a project and installs it

installExtensions(JIPipeWorkbench) - Static method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWindow

Allows the user to select files to install

installMenuExtension(JIPipeWorkbench, JMenu, MenuTarget, boolean) - Static method in class org.hkijena.jipipe.utils.UIUtils

Installs an extension menu

InstantFuture<T> - Class in org.hkijena.jipipe.utils

A dummy Future

InstantFuture(T) - Constructor for class org.hkijena.jipipe.utils.InstantFuture

Initializes a new instance

IntegerAndIntegerPair - Class in org.hkijena.jipipe.extensions.parameters.pairs

A parameter that renames an integer into another integer

IntegerAndIntegerPair() - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.IntegerAndIntegerPair

Creates a new instance

IntegerAndIntegerPair(IntegerAndIntegerPair) - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.IntegerAndIntegerPair

Creates a copy

IntegerAndIntegerPair.List - Class in org.hkijena.jipipe.extensions.parameters.pairs

A collection of multiple IntegerAndIntegerPair

IntegerList - Class in org.hkijena.jipipe.extensions.parameters.primitives

A list of Integer

IntegerList() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.IntegerList

Creates a new empty list

IntegerList(IntegerList) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.IntegerList

Creates a copy

IntegerRange - Class in org.hkijena.jipipe.extensions.parameters.generators

Parameter that contains an integer range as string.

IntegerRange() - Constructor for class org.hkijena.jipipe.extensions.parameters.generators.IntegerRange

Creates a new instance with a null value

IntegerRange(String) - Constructor for class org.hkijena.jipipe.extensions.parameters.generators.IntegerRange

Creates a new instance and initializes it

IntegerRange(IntegerRange) - Constructor for class org.hkijena.jipipe.extensions.parameters.generators.IntegerRange

Creates a copy

IntegerRange.Deserializer - Class in org.hkijena.jipipe.extensions.parameters.generators

Deserializes the reference from a string

IntegerRange.Serializer - Class in org.hkijena.jipipe.extensions.parameters.generators

Serializes the reference as ID

IntegerRangeParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.generators

Editor for IntegerRange

IntegerRangeParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.generators.IntegerRangeParameterEditorUI

IntegerRangeParameterGenerator - Class in org.hkijena.jipipe.extensions.parameters.generators

Generates Integer

IntegerRangeParameterGenerator(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.extensions.parameters.generators.IntegerRangeParameterGenerator

Creates a new instance

IntegrateColumnsAlgorithm - Class in org.hkijena.jipipe.extensions.tables.algorithms

Algorithm that integrates columns

IntegrateColumnsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.IntegrateColumnsAlgorithm

Creates a new instance

IntegrateColumnsAlgorithm(IntegrateColumnsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.IntegrateColumnsAlgorithm

Creates a copy

IntegratingColumnOperation - Interface in org.hkijena.jipipe.extensions.tables

A ColumnOperation that creates an integrated output (meaning that the output only contains one entry)

IntegratingColumnOperationEntry(String, String, IntegratingColumnOperation) - Constructor for class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData.IntegratingColumnOperationEntry

Creates a new entry

IntegratingTableColumnProcessorParameter - Class in org.hkijena.jipipe.extensions.tables.parameters.processors

A parameter that models processing an input column via an integration function and generating an output column

IntegratingTableColumnProcessorParameter() - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.processors.IntegratingTableColumnProcessorParameter

IntegratingTableColumnProcessorParameter(IntegratingTableColumnProcessorParameter) - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.processors.IntegratingTableColumnProcessorParameter

IntegratingTableColumnProcessorParameterList - Class in org.hkijena.jipipe.extensions.tables.parameters.collections

IntegratingTableColumnProcessorParameterList() - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.collections.IntegratingTableColumnProcessorParameterList

Creates a new instance

IntegratingTableColumnProcessorParameterList(IntegratingTableColumnProcessorParameterList) - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.collections.IntegratingTableColumnProcessorParameterList

Creates a copy

InternalGradientSegmentation2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold

Internal gradient segmenter

InternalGradientSegmentation2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.InternalGradientSegmentation2DAlgorithm

InternalGradientSegmentation2DAlgorithm(InternalGradientSegmentation2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.InternalGradientSegmentation2DAlgorithm

Copies the algorithm

InternalNodeTypeCategory - Class in org.hkijena.jipipe.api.nodes.categories

InternalNodeTypeCategory() - Constructor for class org.hkijena.jipipe.api.nodes.categories.InternalNodeTypeCategory

InterpolationMethod - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.ij1

Available interpolation methods

interruptThreads(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.utils.Hough_Circle

intersect(RectangularLine) - Method in class org.hkijena.jipipe.ui.grapheditor.connections.RectangularLine

Returns true if this line intersects with the other line

intersectWith(JIPipeParameterVisibility) - Method in enum org.hkijena.jipipe.api.parameters.JIPipeParameterVisibility

Gets the lower visibility of this one one the other one

IntModificationParameter - Class in org.hkijena.jipipe.extensions.parameters.roi

A parameter that is intended to set or scale an integer

IntModificationParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.roi.IntModificationParameter

Creates a new instance with default values

IntModificationParameter(int, double, boolean) - Constructor for class org.hkijena.jipipe.extensions.parameters.roi.IntModificationParameter

IntModificationParameter(IntModificationParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.roi.IntModificationParameter

Creates a copy

IntModificationParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.roi

Editor for IntModificationParameter

IntModificationParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.roi.IntModificationParameterEditorUI

IntParameterTypeInfo - Class in org.hkijena.jipipe.extensions.parameters.primitives

Info for Integer

IntParameterTypeInfo() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.IntParameterTypeInfo

IntPrimitiveParameterTypeInfo - Class in org.hkijena.jipipe.extensions.parameters.primitives

Info for Integer

IntPrimitiveParameterTypeInfo() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.IntPrimitiveParameterTypeInfo

IntRangeAndIntegerPair - Class in org.hkijena.jipipe.extensions.parameters.pairs

A parameter that renames an integer into another integer

IntRangeAndIntegerPair() - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.IntRangeAndIntegerPair

Creates a new instance

IntRangeAndIntegerPair(IntRangeAndIntegerPair) - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.IntRangeAndIntegerPair

Creates a copy

IntRangeAndIntegerPair.List - Class in org.hkijena.jipipe.extensions.parameters.pairs

A collection of multiple IntRangeAndIntegerPair

INVALID_FILESYSTEM_CHARACTERS - Static variable in class org.hkijena.jipipe.utils.StringUtils

INVALID_JSONIFY_CHARACTERS - Static variable in class org.hkijena.jipipe.utils.StringUtils

InvertColorsAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color

Wrapper around ImageProcessor

InvertColorsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.InvertColorsAlgorithm

Instantiates a new node type.

InvertColorsAlgorithm(InvertColorsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.InvertColorsAlgorithm

Instantiates a new node type.

invertSelection() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

InvertSelectionNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu

InvertSelectionNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.InvertSelectionNodeUIContextAction

invokeMethod(Object, String, Object...) - Static method in class org.hkijena.jipipe.utils.ReflectionUtils

Calls a function and returns its output

IOInterfaceAlgorithm - Class in org.hkijena.jipipe.api.compartments.algorithms

Algorithm that passes the input to the output

IOInterfaceAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.api.compartments.algorithms.IOInterfaceAlgorithm

Creates a new instance.

IOInterfaceAlgorithm(IOInterfaceAlgorithm) - Constructor for class org.hkijena.jipipe.api.compartments.algorithms.IOInterfaceAlgorithm

Creates a copy of the other algorithm

isAddFileExtension() - Method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings

isAddToSelection() - Method in class org.hkijena.jipipe.ui.events.AlgorithmSelectedEvent

isAllowCache() - Method in class org.hkijena.jipipe.extensions.settings.RuntimeSettings

isAllowDuplicateDataSets() - Method in class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm.DataBatchGenerationSettings

isAllowInheritedOutputSlots() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

isAllowInheritedOutputSlots() - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration

isAllowSkipAlgorithmsWithoutInput() - Method in class org.hkijena.jipipe.extensions.settings.RuntimeSettings

isAllowUserModification() - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection

isAnnotateSlices() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackTo2DAlgorithm

isAnnotateWithChannelIndex() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SplitChannelsAlgorithm

isAnnotateWithSlotName() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SplitChannelsAlgorithm

isAppend() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ConvertColumnsAlgorithm

isAppendDataTypeAsMetadata() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ExportDataByParameter

isAppendDataTypeUsesRealDataType() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ExportDataByParameter

isAppendDirectoryNameToTarget() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.CopyPath

isApplyDespeckle() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HessianSegmentation2DAlgorithm

isApplyFirstCLAHE() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.InternalGradientSegmentation2DAlgorithm

isApplyGaussian() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.InternalGradientSegmentation2DAlgorithm

isApplyInternalGradient() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HessianSegmentation2DAlgorithm

isApplyPerChannel() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiCalculatorAlgorithm

isApplyPerChannel() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiStatisticsAlgorithm

isApplyPerFrame() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiCalculatorAlgorithm

isApplyPerFrame() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiStatisticsAlgorithm

isApplyPerSlice() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiCalculatorAlgorithm

isApplyPerSlice() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiStatisticsAlgorithm

isApplyPerSlice() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics.GreyscalePixelsGenerator

isApplyPerSlice() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics.HistogramGenerator

isApplySecondCLAHE() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.InternalGradientSegmentation2DAlgorithm

isAskOnDeleteCompartment() - Method in class org.hkijena.jipipe.extensions.settings.GraphEditorUISettings

isAskOnDeleteNode() - Method in class org.hkijena.jipipe.extensions.settings.GraphEditorUISettings

isAskOnDeleteParameter() - Method in class org.hkijena.jipipe.extensions.settings.GraphEditorUISettings

isAssignableTo(Class<?>, Class<?>) - Static method in class org.hkijena.jipipe.utils.ReflectionUtils

More powerful variant of Class.isAssignableFrom that supports primitives.

isAttachOnlyNonDefaultParameterAnnotations() - Method in class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm.ParameterSlotAlgorithmSettings

isAttachParameterAnnotations() - Method in class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm.ParameterSlotAlgorithmSettings

isAutoCalibrateAfterPulling() - Method in class org.hkijena.jipipe.extensions.clij2.CLIJSettings

isAutoClamp() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SortAndExtractRoiByStatisticsAlgorithm

isAutoScale() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter

isBlackBackground() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D

isCanceled() - Method in class org.hkijena.jipipe.ui.compat.RunSingleAlgorithmDialog

isCancelled() - Method in class org.hkijena.jipipe.utils.InstantFuture

isCellEditable(int, int) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

isCellEditable(int, int) - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable

isCellEditable(int, int) - Method in class org.hkijena.jipipe.api.data.JIPipeMergedDataSlotTable

isCellEditable(int, int) - Method in class org.hkijena.jipipe.api.data.JIPipeMergedExportedDataTable

isCellEditable(int, int) - Method in class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2D

isCellEditable(int, int) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable

isCellEditable(int, int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

isCellEditable(int, int) - Method in class org.hkijena.jipipe.ui.batchassistant.DataSlotTableUI.WrapperTableModel

isCellEditable(int, int) - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheDataSlotTableUI.WrapperTableModel

isCellEditable(int, int) - Method in class org.hkijena.jipipe.ui.ijupdater.FileTableModel

isCollapsed() - Method in class org.hkijena.jipipe.extensions.parameters.scripts.ScriptParameter

isCompareAbsolute() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.Hessian2DAlgorithm

isCompareAbsolute() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HessianSegmentation2DAlgorithm

isCompatible(JIPipeNodeInfo) - Static method in class org.hkijena.jipipe.api.compat.SingleImageJAlgorithmRun

Returns true if an algorithm can be run in a single ImageJ algorithm run

isConcatenate() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter

isContinueLoading() - Method in class org.hkijena.jipipe.ui.project.UnsatisfiedDependenciesDialog

isConvertible(Class<? extends JIPipeData>, Class<? extends JIPipeData>) - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry

Returns true if the input data type can be converted into the output data type.

isCorrectCorners() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background.RollingBallBackgroundEstimator2DAlgorithm

isCrop() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter

isCropC() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.CropToRoiAlgorithm

isCropT() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.CropToRoiAlgorithm

isCropXY() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.CropToRoiAlgorithm

isCropZ() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.CropToRoiAlgorithm

isCurrentlyRunning() - Method in class org.hkijena.jipipe.ui.ijupdater.JIPipeImageJPluginManager

isDarkBackground() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.AutoThreshold2DAlgorithm

isDataUnique() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

Returns true if all rows are unique according to their traits

isDiscardExistingAnnotations() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateWithAnnotationTable

isDone() - Method in class org.hkijena.jipipe.utils.InstantFuture

isDrawFilledOutline() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToMaskAlgorithm

isDrawFilledOutline() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToRGBAlgorithm

isDrawFilledOutline() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToMaskAlgorithm

isDrawFilledOutline() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToRGBAlgorithm

isDrawLabel() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToRGBAlgorithm

isDrawLabel() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToRGBAlgorithm

isDrawOutline() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToMaskAlgorithm

isDrawOutline() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToRGBAlgorithm

isDrawOutline() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToMaskAlgorithm

isDrawOutline() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToRGBAlgorithm

isDrawOutsideEdges() - Method in class org.hkijena.jipipe.extensions.settings.GraphEditorUISettings

isDrawOver() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToMaskAlgorithm

isDrawOver() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToRGBAlgorithm

isDrawOver() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToRGBAlgorithm

isDuplicateImage() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.LUTInverterAlgorithm

isDuplicateImage() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.RemoveLUTAlgorithm

isDuplicateImage() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.SetLUTFromColorAlgorithm

isDuplicateImage() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.DisplayRangeCalibrationAlgorithm

isEmpty() - Method in class org.hkijena.jipipe.api.JIPipeProjectCache

isEmpty() - Method in class org.hkijena.jipipe.ui.running.JIPipeRunnerQueue

isEnabled() - Method in class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

isEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameter

isEnabled() - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotSeriesBuilder

isEnableFallthrough() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.SplitByAnnotation

isEnableLayoutHelper() - Method in class org.hkijena.jipipe.extensions.settings.GraphEditorUISettings

isExcludeEdges() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D

isExcludeOnEdges() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.LocalMaxima2DAlgorithm

isExcludeSelected() - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBenchSettings

isExtractRois() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter

isFastMode() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast.CLAHEContrastEnhancer

isFilesystemCompatible(String) - Static method in class org.hkijena.jipipe.utils.StringUtils

Returns if the string does not contain invalid characters.

isFilterOnlyFileNames() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ListFiles

isFilterOnlyFolderNames() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ListSubfolders

isFilterOnlyNames() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.FilterPaths

isFlipTemplateHorizontally() - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm

isFlipTemplateVertically() - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm

isFloatingPointOutput() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ImageCalculator2DAlgorithm

isForceCrossPlatformLookAndFeel() - Method in class org.hkijena.jipipe.extensions.settings.GeneralUISettings

isForceReflection() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree

isFullPath() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.SimplePathAnnotationGenerator

isGenerateCachePreviews() - Method in class org.hkijena.jipipe.extensions.settings.GeneralUISettings

isGenerateResultPreviews() - Method in class org.hkijena.jipipe.extensions.settings.GeneralUISettings

isGeneratingTableColumn(Class<? extends JIPipeData>) - Static method in interface org.hkijena.jipipe.extensions.tables.datatypes.TableColumn

Returns true if the parameter is a generating table column.

isHasParameterSlot() - Method in class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm.ParameterSlotAlgorithmSettings

isHidden(Class<? extends JIPipeData>) - Static method in interface org.hkijena.jipipe.api.data.JIPipeData

Returns true if this data should be be accessible by the user

isHidden() - Method in class org.hkijena.jipipe.api.data.JIPipeDataInfo

isHidden() - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

isHidden() - Method in class org.hkijena.jipipe.api.nodes.JIPipeEmptyNodeInfo

isHidden() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMutableNodeInfo

isHidden() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeInfo

Returns true if this algorithm should not appear in the list of available algorithms.

isHidden(String) - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry

Returns true if the data type with given ID is hidden

isHidden() - Method in class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterNodeInfo

isIgnoreCustomParameters() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree

isIgnoreMissingChannels() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SplitChannelsAlgorithm

isIgnoreMissingMetadata() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ExportDataByParameter

isIgnoreMissingSlices() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackSplitterAlgorithm

isIgnoreReflectionParameters() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree

isInitialized() - Method in class org.hkijena.jipipe.api.compartments.algorithms.JIPipeProjectCompartment

isInput() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

isInput() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo

isInputIsEDM() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.LocalMaxima2DAlgorithm

isInputSlotsSealed() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

isInputSlotsSealed() - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration

isInstantiated() - Static method in class org.hkijena.jipipe.JIPipeDefaultRegistry

isInvert() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.FilterPaths

isInvert() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.FrangiVesselnessFeatures

isInvert() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.MeijeringVesselness2DFeatures

isInvert() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterRoiByStatisticsAlgorithm

isInvert() - Method in class org.hkijena.jipipe.extensions.parameters.predicates.DoublePredicate

isInvert() - Method in class org.hkijena.jipipe.extensions.parameters.predicates.PathPredicate

isInvert() - Method in class org.hkijena.jipipe.extensions.parameters.predicates.StringPredicate

isInvert() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.FilterTableAlgorithm

isInvertCustomColumns() - Method in class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm.DataBatchGenerationSettings

isInvertCustomColumns() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm.DataBatchGenerationSettings

isKeepAnnotationColumns() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ConvertAnnotationTableToAnnotatedTables

isKeepSameChannelCount() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.ArrangeChannelsAlgorithm

isLabels() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm

isLayoutHelperEnabled() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

isLoadFromCache() - Method in class org.hkijena.jipipe.api.JIPipeRunSettings

isLoadFromCache() - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBenchSettings

isLocal() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm

isMeanVisible() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer

Returns the flag that controls whether or not the mean indicator is draw for each item.

isMedianVisible() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer

Returns the flag that controls whether or not the median indicator is draw for each item.

isModernizeCrossPlatformLookAndFeel() - Method in class org.hkijena.jipipe.extensions.settings.GeneralUISettings

isMutableTableColumn(Class<? extends JIPipeData>) - Static method in interface org.hkijena.jipipe.extensions.tables.datatypes.TableColumn

Returns true if the parameter is a mutable table column.

isNeedsToExist() - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FileDataSource

isNeedsToExist() - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FolderDataSource

isNeverAskOnClosingTabs() - Method in class org.hkijena.jipipe.extensions.settings.GeneralUISettings

isNoLUT() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMEExporterSettings

isNormalize() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics.HistogramGenerator

isNullOrEmpty(String) - Static method in class org.hkijena.jipipe.utils.StringUtils

Returns true if the string is null or empty

isNumeric() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.DoubleArrayTableColumn

isNumeric(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Returns true if a column is numeric

isNumeric() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.RowIndexTableColumn

isNumeric() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.StringArrayTableColumn

isNumeric() - Method in interface org.hkijena.jipipe.extensions.tables.datatypes.TableColumn

Returns true if this column contains double entries.

isNumeric() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ZeroTableColumn

isNumeric() - Method in class org.hkijena.jipipe.extensions.tables.TableColumnReference

IsolateNodesUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu

IsolateNodesUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.IsolateNodesUIContextAction

isOnlyActiveImage() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ImagePlusFromGUI

isOutput() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

isOutput() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo

isOutputFiles() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.FilterPaths

isOutputFolders() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.FilterPaths

isOutputNonExisting() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.FilterPaths

isOutputSlotsSealed() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

isOutputSlotsSealed() - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration

isOverlapping() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI

Returns true if this component overlaps with another component

isOverrideReferenceImage() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ImageRoiProcessorAlgorithm

isPadded() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMEExporterSettings

isParallelizationEnabled() - Method in class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm

isParallelizationEnabled() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm

isParallelizationEnabled() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeParallelizedAlgorithm

isParallelizationEnabled() - Method in class org.hkijena.jipipe.api.nodes.JIPipeSimpleIteratingAlgorithm

isParameterAnnotationsUseInternalNames() - Method in class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm.ParameterSlotAlgorithmSettings

isPassThrough() - Method in class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

isPreferAssociatedImage() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ImageRoiProcessorAlgorithm

isPreferAssociatedImage() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToMaskAlgorithm

isPreferAssociatedImage() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToRGBAlgorithm

isPreSmoothing() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background.RollingBallBackgroundEstimator2DAlgorithm

isPreventUpdateSlots() - Method in class org.hkijena.jipipe.api.grouping.GraphWrapperAlgorithm

isPrimitiveWrapperOf(Class<?>, Class<?>) - Static method in class org.hkijena.jipipe.utils.ReflectionUtils

Returns true if the class is a primitive wrapper

isProjectAllHyperstackTimePoints() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.ZProjectorAlgorithm

isProjectInfoGeneratesPreview() - Method in class org.hkijena.jipipe.extensions.settings.GeneralUISettings

isRecalibrate() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.DivideByMaximumAlgorithm

isRecursive() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ListFiles

isRecursive() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ListSubfolders

isRecursiveFollowsLinks() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ListFiles

isRecursiveFollowsLinks() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ListSubfolders

isRegistered(Class<? extends JIPipeData>) - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry

isRemoveExtensions() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.SimplePathAnnotationGenerator

isRemoveLut() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.ImagePlusFromFile

isRemoveOutputAnnotations() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.ConvertToAnnotationTable

isReplaceIfExists() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.GenerateColumnAlgorithm

isReplaceIfExists() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.SetColumnAlgorithm

isRestoreTabs() - Method in class org.hkijena.jipipe.extensions.settings.ProjectsSettings

isRestrictToROI() - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm

isRunnable() - Method in class org.hkijena.jipipe.api.nodes.categories.InternalNodeTypeCategory

isRunnable() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeTypeCategory

Returns true if nodes of this category can be run in a single run

isRunningOrEnqueued(JIPipeRunnable) - Method in class org.hkijena.jipipe.ui.running.JIPipeRunnerQueue

Determines if a runnable is enqueued or running

isSaveOutputs() - Method in class org.hkijena.jipipe.api.JIPipeRunSettings

isSaveOutputs() - Method in class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

isSaveOutputs() - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBenchSettings

isSaveROI() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMEExporterSettings

isSeparateChannels() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background.RollingBallBackgroundEstimator2DAlgorithm

isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.AlgorithmGraphCopyNodeUIContextAction

isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.AlgorithmGraphCutNodeUIContextAction

isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.AlgorithmGraphPasteNodeUIContextAction

isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.GraphCompartmentCopyNodeUIContextAction

isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.GraphCompartmentCutNodeUIContextAction

isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.GraphCompartmentPasteNodeUIContextAction

isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.CollapseIOInterfaceNodeUIContextAction

isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DeleteCompartmentUIContextAction

isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DeleteNodeUIContextAction

isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisableNodeUIContextAction

isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisablePassThroughNodeUIContextAction

isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisableSaveOutputsNodeUIContextAction

isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnableNodeUIContextAction

isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnablePassThroughNodeUIContextAction

isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnableSaveOutputsNodeUIContextAction

isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportCompartmentAsJsonNodeUIContextAction

isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportCompartmentToNodeUIContextAction

isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportNodeUIContextAction

isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.GroupNodeUIContextAction

isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.InvertSelectionNodeUIContextAction

isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.IsolateNodesUIContextAction

isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.JsonAlgorithmToGroupNodeUIContextAction

isShowingInOverhang() - Method in interface org.hkijena.jipipe.ui.grapheditor.contextmenu.NodeUIContextAction

If true, this item is shown in the toolbar overhang menu instead of the toolbar itself.

isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.RunAndShowResultsNodeUIContextAction

isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.SelectAllNodeUIContextAction

isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.SelectAndMoveNodeHereNodeUIContextAction

isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.UpdateCacheNodeUIContextAction

isShowIntroduction() - Method in class org.hkijena.jipipe.extensions.settings.GeneralUISettings

isShowParameterSearchBar() - Method in class org.hkijena.jipipe.extensions.settings.GeneralUISettings

isShowProjectInfo() - Method in class org.hkijena.jipipe.extensions.settings.GeneralUISettings

isSilent() - Method in class org.hkijena.jipipe.extensions.settings.ExtensionSettings

isSkipExisting() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.CopyPath

isSkipIncompleteDataSets() - Method in class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm.DataBatchGenerationSettings

isSkipIncompleteDataSets() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm.DataBatchGenerationSettings

isSkipInvalid() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.CopyPath

isSortedStackIds() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackSplitterAlgorithm

isSplit() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.DefineRectangularRoiAlgorithm

isSplit() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ReferencedDefineRectangularRoiAlgorithm

isSplitAfterwards() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiCalculatorAlgorithm

isSplitByInputSlots() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ExportDataByParameter

isSplitC() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMEExporterSettings

isSplitChannels() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter

isSplitFocalPlanes() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter

isSplitSlices() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D

isSplitT() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMEExporterSettings

isSplitTimePoints() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter

isSplitZ() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMEExporterSettings

isStitchTiles() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter

isStoredAsResource() - Method in class org.hkijena.jipipe.api.JIPipeProjectTemplate

isStoreToCache() - Method in class org.hkijena.jipipe.api.JIPipeRunSettings

isStoreToCache() - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBenchSettings

isStrict() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.LocalMaxima2DAlgorithm

isStrictMode() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.MacroWrapperAlgorithm

isSubtract() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background.RollingBallBackgroundEstimator2DAlgorithm

isSwapDimensions() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter

isSwitchPanningDirection() - Method in class org.hkijena.jipipe.extensions.settings.GraphEditorUISettings

isTriviallyConvertible(Class<? extends JIPipeData>, Class<? extends JIPipeData>) - Static method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry

Returns true if the input data type can be trivially converted into the output data type.

isUiHidden() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphEdge

Determines if the edge should be shown in UI

isUILabelEnabled() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.api.grouping.parameters.NodeGroupContentsParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.collections.ListParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.colors.ColorParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.editors.JIPipeAlgorithmIconRefParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.editors.JIPipeDataInfoRefParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.editors.JIPipeNodeInfoRefParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.editors.JIPipeParameterCollectionVisibilitiesParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.generators.IntegerRangeParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2DParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.patterns.StringPatternExtractionParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.predicates.DoublePredicateParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.predicates.PathPredicateParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.predicates.StringOrDoublePredicateParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.predicates.StringPredicateParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.BooleanParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DynamicEnumParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DynamicSetParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.EnumParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.FileParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.FilePathParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.NumberParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.PathListParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.StringOrDoubleParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.StringParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.roi.AnchorParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.roi.IntModificationParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.roi.MarginParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.roi.RectangleParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.scripts.LargeScriptParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.scripts.ScriptParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTableEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.util.JIPipeAuthorMetadataParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.util.JIPipeParameterCollectionParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.plots.parameters.UIPlotDataSeriesColumnEnumParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnGeneratorParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.tables.parameters.ResultsTableDataParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.tables.parameters.TableColumnSourceParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.ui.parameters.JIPipeParameterEditorUI

If true, the ParameterPanel will display a label with the parameter name next to this UI.

isUniqueStackIds() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackSplitterAlgorithm

isUseAveraging() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale2DAlgorithm

isUseAveraging() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale3DAlgorithm

isUseBioFormats() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesSettings

isUseExactValue() - Method in class org.hkijena.jipipe.extensions.parameters.roi.IntModificationParameter

isUseNativeChooser() - Method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings

isUserCanDisconnect() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphEdge

isUserRemovable() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.DoubleArrayTableColumn

isUserRemovable() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.RowIndexTableColumn

isUserRemovable() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.StringArrayTableColumn

isUserRemovable() - Method in interface org.hkijena.jipipe.extensions.tables.datatypes.TableColumn

Returns if users can remove this source

isUserRemovable() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ZeroTableColumn

isUserRemovable() - Method in class org.hkijena.jipipe.extensions.tables.TableColumnReference

isValid() - Method in class org.hkijena.jipipe.api.JIPipeValidityReport

isValidateImageJDependencies() - Method in class org.hkijena.jipipe.extensions.settings.ExtensionSettings

isValidateNodeTypes() - Method in class org.hkijena.jipipe.extensions.settings.ExtensionSettings

isValidateOnSave() - Method in class org.hkijena.jipipe.extensions.settings.GeneralUISettings

isValidVariableName(String) - Static method in class org.hkijena.jipipe.utils.MacroUtils

Returns true if the variable name is valid

isVisible(String) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterCollectionVisibilities

Returns if the parameter is visible

isVisible() - Method in class org.hkijena.jipipe.utils.MacroFlag

isVisibleIn(String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Returns true if this algorithm is visible in the specified container compartment

isVisibleIn(JIPipeParameterVisibility) - Method in enum org.hkijena.jipipe.api.parameters.JIPipeParameterVisibility

Returns true if this visibility is visible in a container with a minimum visibility

isVisibleInCompartmentGraph() - Method in class org.hkijena.jipipe.api.compartments.algorithms.CompartmentNodeTypeCategory

isVisibleInCompartmentGraph() - Method in class org.hkijena.jipipe.api.nodes.categories.AnnotationsNodeTypeCategory

isVisibleInCompartmentGraph() - Method in class org.hkijena.jipipe.api.nodes.categories.DataSourceNodeTypeCategory

isVisibleInCompartmentGraph() - Method in class org.hkijena.jipipe.api.nodes.categories.FileSystemNodeTypeCategory

isVisibleInCompartmentGraph() - Method in class org.hkijena.jipipe.api.nodes.categories.ImagesNodeTypeCategory

isVisibleInCompartmentGraph() - Method in class org.hkijena.jipipe.api.nodes.categories.InternalNodeTypeCategory

isVisibleInCompartmentGraph() - Method in class org.hkijena.jipipe.api.nodes.categories.MiscellaneousNodeTypeCategory

isVisibleInCompartmentGraph() - Method in class org.hkijena.jipipe.api.nodes.categories.RoiNodeTypeCategory

isVisibleInCompartmentGraph() - Method in class org.hkijena.jipipe.api.nodes.categories.TableNodeTypeCategory

isVisibleInCompartmentGraph() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeTypeCategory

If the category should be available in the compartment graph editor

isVisibleInGraphCompartment() - Method in class org.hkijena.jipipe.api.compartments.algorithms.CompartmentNodeTypeCategory

isVisibleInGraphCompartment() - Method in class org.hkijena.jipipe.api.nodes.categories.AnnotationsNodeTypeCategory

isVisibleInGraphCompartment() - Method in class org.hkijena.jipipe.api.nodes.categories.DataSourceNodeTypeCategory

isVisibleInGraphCompartment() - Method in class org.hkijena.jipipe.api.nodes.categories.FileSystemNodeTypeCategory

isVisibleInGraphCompartment() - Method in class org.hkijena.jipipe.api.nodes.categories.ImagesNodeTypeCategory

isVisibleInGraphCompartment() - Method in class org.hkijena.jipipe.api.nodes.categories.InternalNodeTypeCategory

isVisibleInGraphCompartment() - Method in class org.hkijena.jipipe.api.nodes.categories.MiscellaneousNodeTypeCategory

isVisibleInGraphCompartment() - Method in class org.hkijena.jipipe.api.nodes.categories.RoiNodeTypeCategory

isVisibleInGraphCompartment() - Method in class org.hkijena.jipipe.api.nodes.categories.TableNodeTypeCategory

isVisibleInGraphCompartment() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeTypeCategory

If the category should be available in the graph compartment editor

isWithMetadataKeys() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ExportDataByParameter

isWithParents() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.CreateDirectory

italic - Variable in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog

itemDone(Object) - Method in class org.hkijena.jipipe.ui.ijupdater.IJProgressAdapter

itemDone(Object) - Method in class org.hkijena.jipipe.ui.ijupdater.ProgressAdapter

ITERATING_ALGORITHM_DESCRIPTION - Static variable in class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm

IteratingPythonScriptAlgorithm - Class in org.hkijena.jipipe.extensions.python

An algorithm that allows to run Python code

IteratingPythonScriptAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.python.IteratingPythonScriptAlgorithm

Creates a new instance

IteratingPythonScriptAlgorithm(IteratingPythonScriptAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.python.IteratingPythonScriptAlgorithm

Creates a copy

J

JIPipeAlgorithm - Class in org.hkijena.jipipe.api.nodes

An JIPipeGraphNode that contains a non-empty workload.

JIPipeAlgorithm(JIPipeNodeInfo, JIPipeSlotConfiguration) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

Initializes a new node type instance and sets a custom slot configuration

JIPipeAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

Initializes a new node type instance

JIPipeAlgorithm(JIPipeAlgorithm) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

Creates a copy

JIPipeAlgorithm.StateSerializer - Class in org.hkijena.jipipe.api.nodes

Serializer used by getStateId() It automatically skips name, compartment, description, slot configuration, and UI parameters that are not relevant to the state

JIPipeAlgorithmCacheBrowserUI - Class in org.hkijena.jipipe.ui.cache

UI around an JIPipeRun result

JIPipeAlgorithmCacheBrowserUI(JIPipeProjectWorkbench, JIPipeGraphNode) - Constructor for class org.hkijena.jipipe.ui.cache.JIPipeAlgorithmCacheBrowserUI

JIPipeAlgorithmCacheTree - Class in org.hkijena.jipipe.ui.cache

Displays a tree that contains all cached items of a state

JIPipeAlgorithmCacheTree(JIPipeProjectWorkbench, JIPipeGraphNode) - Constructor for class org.hkijena.jipipe.ui.cache.JIPipeAlgorithmCacheTree

JIPipeAlgorithmCompendiumUI - Class in org.hkijena.jipipe.ui.compendium

A browsable list of algorithms with full documentation

JIPipeAlgorithmCompendiumUI() - Constructor for class org.hkijena.jipipe.ui.compendium.JIPipeAlgorithmCompendiumUI

Creates a new instance

JIPipeAlgorithmFinderAlgorithmUI - Class in org.hkijena.jipipe.ui.grapheditor.algorithmfinder

UI for finding algorithms

JIPipeAlgorithmFinderAlgorithmUI(JIPipeGraphCanvasUI, JIPipeDataSlot, JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmFinderAlgorithmUI

Creates an algorithm UI for one target algorithm

JIPipeAlgorithmFinderAlgorithmUI(JIPipeGraphCanvasUI, JIPipeDataSlot, JIPipeGraphNode) - Constructor for class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmFinderAlgorithmUI

Creates an algorithm UI for one target algorithm

JIPipeAlgorithmFinderSlotUI - Class in org.hkijena.jipipe.ui.grapheditor.algorithmfinder

UI for one slot in the algorithm finder

JIPipeAlgorithmFinderSlotUI(JIPipeGraphCanvasUI, JIPipeDataSlot, JIPipeDataSlot, boolean) - Constructor for class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmFinderSlotUI

Creates a slot UI

JIPipeAlgorithmFinderUI - Class in org.hkijena.jipipe.ui.grapheditor.algorithmfinder

A user interface to find a matching algorithm for the specified target slot

JIPipeAlgorithmFinderUI(JIPipeGraphCanvasUI, JIPipeDataSlot) - Constructor for class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmFinderUI

Creates a new UI

JIPipeAlgorithmFinderUI.Ranking - Class in org.hkijena.jipipe.ui.grapheditor.algorithmfinder

Ranks JIPipeNodeInfo or JIPipeGraphNode instances It ranks by following values: - search string (node name) - search string (node description) - data type compatibility (0 = not, -1=nontrivial, -2=trivial, -3=exact match) - already occupied or not (no = 0, yes = 1)

JIPipeAlgorithmGraphHistorySnapshot - Interface in org.hkijena.jipipe.api.history

JIPipeAlgorithmIconRef - Class in org.hkijena.jipipe.extensions.parameters.references

Used by JsonNodeInfo to setup icons

JIPipeAlgorithmIconRef() - Constructor for class org.hkijena.jipipe.extensions.parameters.references.JIPipeAlgorithmIconRef

Creates a new instance

JIPipeAlgorithmIconRef(JIPipeAlgorithmIconRef) - Constructor for class org.hkijena.jipipe.extensions.parameters.references.JIPipeAlgorithmIconRef

Copies an instance

JIPipeAlgorithmIconRef.Deserializer - Class in org.hkijena.jipipe.extensions.parameters.references

Deserializes JIPipeAlgorithmIconRef

JIPipeAlgorithmIconRef.Serializer - Class in org.hkijena.jipipe.extensions.parameters.references

Serializes JIPipeAlgorithmIconRef

JIPipeAlgorithmIconRefParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.editors

Editor for JIPipeAlgorithmIconRef

JIPipeAlgorithmIconRefParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.editors.JIPipeAlgorithmIconRefParameterEditorUI

JIPipeAlgorithmListCellRenderer - Class in org.hkijena.jipipe.ui.components

Renders JIPipeGraphNode

JIPipeAlgorithmListCellRenderer() - Constructor for class org.hkijena.jipipe.ui.components.JIPipeAlgorithmListCellRenderer

Creates a new renderer

JIPipeAnnotation - Class in org.hkijena.jipipe.api.data

A single annotation

JIPipeAnnotation() - Constructor for class org.hkijena.jipipe.api.data.JIPipeAnnotation

Creates an empty instance

JIPipeAnnotation(String, String) - Constructor for class org.hkijena.jipipe.api.data.JIPipeAnnotation

Initializes a new instance

JIPipeAnnotationMergeStrategy - Enum in org.hkijena.jipipe.api.data

Determines how annotations are merged

JIPipeApplicationSettingsUI - Class in org.hkijena.jipipe.ui.settings

UI for JIPipeSettingsRegistry

JIPipeApplicationSettingsUI(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.ui.settings.JIPipeApplicationSettingsUI

Creates a new instance

JIPipeAsyncResultDataPlotPreviewUI - Class in org.hkijena.jipipe.ui.resultanalysis

A JIPipeResultDataSlotPreviewUI that uses a SwingWorker to load previews in a separate thread.

JIPipeAsyncResultDataPlotPreviewUI(JTable) - Constructor for class org.hkijena.jipipe.ui.resultanalysis.JIPipeAsyncResultDataPlotPreviewUI

Creates a new renderer

JIPipeAuthorMetadata - Class in org.hkijena.jipipe.api

Models an author with affiliations

JIPipeAuthorMetadata() - Constructor for class org.hkijena.jipipe.api.JIPipeAuthorMetadata

Creates a new instance

JIPipeAuthorMetadata(String, String, String) - Constructor for class org.hkijena.jipipe.api.JIPipeAuthorMetadata

Initializes the instance

JIPipeAuthorMetadata(JIPipeAuthorMetadata) - Constructor for class org.hkijena.jipipe.api.JIPipeAuthorMetadata

Makes a copy

JIPipeAuthorMetadata.List - Class in org.hkijena.jipipe.api

JIPipeAuthorMetadataParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.util

JIPipeAuthorMetadataParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.util.JIPipeAuthorMetadataParameterEditorUI

Creates new instance

JIPipeCacheBrowserUI - Class in org.hkijena.jipipe.ui.cache

UI around an JIPipeRun result

JIPipeCacheBrowserUI(JIPipeProjectWorkbench) - Constructor for class org.hkijena.jipipe.ui.cache.JIPipeCacheBrowserUI

JIPipeCacheDataSlotTableUI - Class in org.hkijena.jipipe.ui.cache

UI that displays a JIPipeDataSlot that is cached

JIPipeCacheDataSlotTableUI(JIPipeProjectWorkbench, JIPipeDataSlot) - Constructor for class org.hkijena.jipipe.ui.cache.JIPipeCacheDataSlotTableUI

JIPipeCacheDataSlotTableUI.WrapperColumnHeaderRenderer - Class in org.hkijena.jipipe.ui.cache

Renders the column header of JIPipeCacheDataSlotTableUI.WrapperTableModel

JIPipeCacheDataSlotTableUI.WrapperTableModel - Class in org.hkijena.jipipe.ui.cache

Wraps around a JIPipeDataSlot to display a "toString" column

JIPipeCachedDataPreview - Class in org.hkijena.jipipe.ui.components

A component that acts as table cell (or other component) that generates a preview of a cached JIPipeData Preview generation is put into its own thread.

JIPipeCachedDataPreview(Component, JIPipeData) - Constructor for class org.hkijena.jipipe.ui.components.JIPipeCachedDataPreview

JIPipeCacheManagerUI - Class in org.hkijena.jipipe.ui.cache

UI that monitors the queue

JIPipeCacheManagerUI(JIPipeProjectWorkbench) - Constructor for class org.hkijena.jipipe.ui.cache.JIPipeCacheManagerUI

Creates new instance

JIPipeCacheMultiDataSlotTableUI - Class in org.hkijena.jipipe.ui.cache

UI that displays a JIPipeDataSlot that is cached

JIPipeCacheMultiDataSlotTableUI(JIPipeProjectWorkbench, List<JIPipeDataSlot>) - Constructor for class org.hkijena.jipipe.ui.cache.JIPipeCacheMultiDataSlotTableUI

JIPipeCacheMultiDataSlotTableUI.MultiDataSlotTableColumnRenderer - Class in org.hkijena.jipipe.ui.cache

Renders the column header

JIPipeCacheStateTreeCellRenderer - Class in org.hkijena.jipipe.ui.cache

Renders the tree in JIPipeResultAlgorithmTree

JIPipeCacheStateTreeCellRenderer() - Constructor for class org.hkijena.jipipe.ui.cache.JIPipeCacheStateTreeCellRenderer

Creates new renderer

JIPipeCacheTree - Class in org.hkijena.jipipe.ui.cache

Displays a tree that contains all cached items of a state

JIPipeCacheTree(JIPipeProjectWorkbench) - Constructor for class org.hkijena.jipipe.ui.cache.JIPipeCacheTree

JIPipeColumnGrouping - Enum in org.hkijena.jipipe.api.nodes

Strategies that determine how to detect the columns that should be used for matching

JIPipeCompartmentGraphUI - Class in org.hkijena.jipipe.ui.compartments

Graph editor UI for a project compartment graph

JIPipeCompartmentGraphUI(JIPipeProjectWorkbench) - Constructor for class org.hkijena.jipipe.ui.compartments.JIPipeCompartmentGraphUI

JIPipeCompartmentOutput - Class in org.hkijena.jipipe.api.compartments.algorithms

A graph compartment output Transfers data 1:1 from input to output

JIPipeCompartmentOutput(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.api.compartments.algorithms.JIPipeCompartmentOutput

Creates a new instance.

JIPipeCompartmentOutput(JIPipeCompartmentOutput) - Constructor for class org.hkijena.jipipe.api.compartments.algorithms.JIPipeCompartmentOutput

Creates a copy of the other algorithm

JIPipeCompartmentOutputData - Class in org.hkijena.jipipe.api.compartments.datatypes

Represents an JIPipeCompartmentOutput in the compartment graph.

JIPipeCompartmentOutputData() - Constructor for class org.hkijena.jipipe.api.compartments.datatypes.JIPipeCompartmentOutputData

JIPipeCompartmentsExtension - Class in org.hkijena.jipipe.api.compartments

Extension that provides compartment management functionality

JIPipeCompartmentsExtension() - Constructor for class org.hkijena.jipipe.api.compartments.JIPipeCompartmentsExtension

JIPipeCompartmentUI - Class in org.hkijena.jipipe.ui.compartments

Editor for one project compartment graph Contains a JIPipeGraphCompartmentUI instance that allows editing the compartment's content

JIPipeCompartmentUI(JIPipeProjectWorkbench, JIPipeProjectCompartment) - Constructor for class org.hkijena.jipipe.ui.compartments.JIPipeCompartmentUI

Creates a new editor

JIPipeCompendiumUI<T> - Class in org.hkijena.jipipe.ui.compendium

A browsable list of help pages

JIPipeCompendiumUI(MarkdownDocument) - Constructor for class org.hkijena.jipipe.ui.compendium.JIPipeCompendiumUI

Creates a new instance

JIPipeComponentCellRenderer - Class in org.hkijena.jipipe.ui.components

JIPipeComponentCellRenderer() - Constructor for class org.hkijena.jipipe.ui.components.JIPipeComponentCellRenderer

JIPipeConnectionDragAndDropBehavior - Class in org.hkijena.jipipe.ui.grapheditor

Adds connection drag & drop behavior to a data slot

JIPipeConnectionDragAndDropBehavior(JIPipeDataSlotUI, JButton) - Constructor for class org.hkijena.jipipe.ui.grapheditor.JIPipeConnectionDragAndDropBehavior

Adds connection drag & drop behavior to a data slot

JIPipeContextAction - Annotation Type in org.hkijena.jipipe.api.parameters

An additional action (usually UI action) that is attached to the ParameterPanel.

JIPipeCustomParameterCollection - Interface in org.hkijena.jipipe.api.parameters

If a class inherits from this interface, reflection-based parameter discovery is replaced by the getCustomParameters() method result.

JIPipeData - Interface in org.hkijena.jipipe.api.data

Base class for any JIPipe data wrapper class Any custom data should have following constructors: 1.

JIPipeDataBatch - Class in org.hkijena.jipipe.api.nodes

Wraps a set of input and output slots that belong together This can be used for convenience

JIPipeDataBatch(JIPipeGraphNode) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeDataBatch

Creates a new interface

JIPipeDataBatch(JIPipeDataBatch) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeDataBatch

Creates a copy

JIPipeDataBatchAlgorithm - Interface in org.hkijena.jipipe.api.nodes

Methods shared across all JIPipeAlgorithm that generate data batches

JIPipeDataBatchKey - Class in org.hkijena.jipipe.api.nodes

Structure that can hold multiple JIPipeAnnotation instances to make a set of traits a key

JIPipeDataBatchKey() - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeDataBatchKey

JIPipeDataCellRenderer - Class in org.hkijena.jipipe.ui.cache

Renders JIPipeData

JIPipeDataCellRenderer() - Constructor for class org.hkijena.jipipe.ui.cache.JIPipeDataCellRenderer

Create new instance

JIPipeDataConverter - Interface in org.hkijena.jipipe.api.data

Interface that converts between JIPipeData instances

JIPipeDataInfo - Class in org.hkijena.jipipe.api.data

Compound type that contains all metadata of an JIPipeData type

JIPipeDataInfo.Deserializer - Class in org.hkijena.jipipe.api.data

Deserializes a info from a data type ID.

JIPipeDataInfo.KeyDeserializer - Class in org.hkijena.jipipe.api.data

Deserializer for a Map key

JIPipeDataInfo.Serializer - Class in org.hkijena.jipipe.api.data

Serializes a info as data type ID

JIPipeDataInfoCellRenderer - Class in org.hkijena.jipipe.ui.cache

Renders JIPipeData

JIPipeDataInfoCellRenderer() - Constructor for class org.hkijena.jipipe.ui.cache.JIPipeDataInfoCellRenderer

Create new instance

JIPipeDataInfoListCellRenderer - Class in org.hkijena.jipipe.ui.components

Renders JIPipeDataInfo

JIPipeDataInfoListCellRenderer() - Constructor for class org.hkijena.jipipe.ui.components.JIPipeDataInfoListCellRenderer

Creates a new renderer

JIPipeDataInfoRef - Class in org.hkijena.jipipe.extensions.parameters.references

Helper to allow easy serialization of JIPipeDataInfo references

JIPipeDataInfoRef(String) - Constructor for class org.hkijena.jipipe.extensions.parameters.references.JIPipeDataInfoRef

Initializes from data ID

JIPipeDataInfoRef(JIPipeDataInfo) - Constructor for class org.hkijena.jipipe.extensions.parameters.references.JIPipeDataInfoRef

JIPipeDataInfoRef() - Constructor for class org.hkijena.jipipe.extensions.parameters.references.JIPipeDataInfoRef

New instance

JIPipeDataInfoRef(JIPipeDataInfoRef) - Constructor for class org.hkijena.jipipe.extensions.parameters.references.JIPipeDataInfoRef

Creates a copy

JIPipeDataInfoRef.Deserializer - Class in org.hkijena.jipipe.extensions.parameters.references

Deserializes the reference from a string

JIPipeDataInfoRef.Serializer - Class in org.hkijena.jipipe.extensions.parameters.references

Serializes the reference as ID

JIPipeDataInfoRefListCellRenderer - Class in org.hkijena.jipipe.ui.components

Renders JIPipeDataInfoRef

JIPipeDataInfoRefListCellRenderer() - Constructor for class org.hkijena.jipipe.ui.components.JIPipeDataInfoRefListCellRenderer

Creates a new renderer

JIPipeDataInfoRefParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.editors

Parameter for JIPipeDataInfoRef

JIPipeDataInfoRefParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.editors.JIPipeDataInfoRefParameterEditorUI

JIPipeDataParameterSettings - Annotation Type in org.hkijena.jipipe.extensions.parameters.editors

Settings for JIPipeData parameters

JIPipeDataSlot - Class in org.hkijena.jipipe.api.data

A data slot holds an JIPipeData instance.

JIPipeDataSlot(JIPipeDataSlotInfo, JIPipeGraphNode) - Constructor for class org.hkijena.jipipe.api.data.JIPipeDataSlot

Creates a new slot

JIPipeDataSlotBackupListCellRenderer - Class in org.hkijena.jipipe.ui.testbench

Renders a JIPipeTestbenchSnapshot

JIPipeDataSlotBackupListCellRenderer() - Constructor for class org.hkijena.jipipe.ui.testbench.JIPipeDataSlotBackupListCellRenderer

Creates a new renderer

JIPipeDataSlotCacheManagerUI - Class in org.hkijena.jipipe.ui.cache

Manages the cache for a specific data slot.

JIPipeDataSlotCacheManagerUI(JIPipeProjectWorkbench, JIPipeDataSlot, JIPipeGraphCanvasUI) - Constructor for class org.hkijena.jipipe.ui.cache.JIPipeDataSlotCacheManagerUI

JIPipeDataSlotInfo - Class in org.hkijena.jipipe.api.data

Defines an JIPipeGraphNode data slot.

JIPipeDataSlotInfo(Class<? extends JIPipeData>, JIPipeSlotType, String, String) - Constructor for class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo

JIPipeDataSlotInfo(Class<? extends JIPipeData>, JIPipeSlotType, String) - Constructor for class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo

Creates an unnamed slot.

JIPipeDataSlotInfo(JIPipeInputSlot) - Constructor for class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo

JIPipeDataSlotInfo(JIPipeOutputSlot) - Constructor for class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo

JIPipeDataSlotInfo(JIPipeDataSlotInfo) - Constructor for class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo

Copies the definition

JIPipeDataSlotInfo(Class<? extends JIPipeData>, JIPipeSlotType) - Constructor for class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo

Creates a new instance.

JIPipeDataSlotInfo.Deserializer - Class in org.hkijena.jipipe.api.data

Deserializes an JIPipeDataSlotInfo

JIPipeDataSlotInfo.Serializer - Class in org.hkijena.jipipe.api.data

Serializes an JIPipeDataSlotInfo

JIPipeDataSlotListCellRenderer - Class in org.hkijena.jipipe.ui.grapheditor.settings

Renders a JIPipeDataSlot

JIPipeDataSlotListCellRenderer() - Constructor for class org.hkijena.jipipe.ui.grapheditor.settings.JIPipeDataSlotListCellRenderer

Creates a new renderer

JIPipeDataSlotRowUI - Class in org.hkijena.jipipe.ui.cache

UI for a row

JIPipeDataSlotRowUI(JIPipeWorkbench, JIPipeDataSlot, int) - Constructor for class org.hkijena.jipipe.ui.cache.JIPipeDataSlotRowUI

Creates a new instance

JIPipeDataSlotTableColumnHeaderRenderer - Class in org.hkijena.jipipe.ui.resultanalysis

Renders additional String columns in a table

JIPipeDataSlotTableColumnHeaderRenderer(JIPipeExportedDataTable) - Constructor for class org.hkijena.jipipe.ui.resultanalysis.JIPipeDataSlotTableColumnHeaderRenderer

Creates a new instance

JIPipeDataSlotTreeCellRenderer - Class in org.hkijena.jipipe.ui.grapheditor.settings

Renders an JIPipeDataSlot in a JTree

JIPipeDataSlotTreeCellRenderer() - Constructor for class org.hkijena.jipipe.ui.grapheditor.settings.JIPipeDataSlotTreeCellRenderer

Creates a new renderer

JIPipeDataSlotUI - Class in org.hkijena.jipipe.ui.grapheditor

UI around an JIPipeDataSlot

JIPipeDataSlotUI(JIPipeWorkbench, JIPipeNodeUI, String, JIPipeDataSlot) - Constructor for class org.hkijena.jipipe.ui.grapheditor.JIPipeDataSlotUI

Creates a new UI

JIPipeDataTypePicker - Class in org.hkijena.jipipe.ui.components

Panel that allows to pick JIPipeDataInfo

JIPipeDataTypePicker(JIPipeDataTypePicker.Mode, Set<JIPipeDataInfo>) - Constructor for class org.hkijena.jipipe.ui.components.JIPipeDataTypePicker

JIPipeDataTypePicker.DataTypeDeselectedEvent - Class in org.hkijena.jipipe.ui.components

Generated when a trait is deselected

JIPipeDataTypePicker.DataTypeSelectedEvent - Class in org.hkijena.jipipe.ui.components

Generated when a trait is selected

JIPipeDataTypePicker.Mode - Enum in org.hkijena.jipipe.ui.components

The mode of the picker

JIPipeDataTypePicker.Renderer - Class in org.hkijena.jipipe.ui.components

Renders an item

JIPipeDataTypePicker.SelectedDataTypesChangedEvent - Class in org.hkijena.jipipe.ui.components

Generated when a trait is selected

JIPipeDatatypeRegistry - Class in org.hkijena.jipipe.api.registries

Contains known JIPipeData types, and associates them to their respective JIPipeDataSlot.

JIPipeDatatypeRegistry() - Constructor for class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry

Creates a new instance

JIPipeDatatypeRegistry.DataConverterEdge - Class in org.hkijena.jipipe.api.registries

Edge between JIPipeDataInfo instances that indicate a conversion

JIPipeDefaultDocumentation - Class in org.hkijena.jipipe.api

Default implementation of JIPipeDocumentation

JIPipeDefaultDocumentation(String, String) - Constructor for class org.hkijena.jipipe.api.JIPipeDefaultDocumentation

Creates a new instance

JIPipeDefaultJavaExtension - Class in org.hkijena.jipipe

Default implementation of JIPipeJavaExtension

JIPipeDefaultJavaExtension() - Constructor for class org.hkijena.jipipe.JIPipeDefaultJavaExtension

Creates a new instance

JIPipeDefaultMutableSlotConfiguration - Class in org.hkijena.jipipe.api.data

A schema for slots

JIPipeDefaultMutableSlotConfiguration() - Constructor for class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

Creates a new instance

JIPipeDefaultMutableSlotConfiguration.Builder - Class in org.hkijena.jipipe.api.data

A builder for creating a configuration

JIPipeDefaultNodeRegistrationTask - Class in org.hkijena.jipipe.api.registries

Mutable implementation of JIPipeNodeRegistrationTask

JIPipeDefaultNodeRegistrationTask() - Constructor for class org.hkijena.jipipe.api.registries.JIPipeDefaultNodeRegistrationTask

Creates a new task

JIPipeDefaultParameterTypeInfo - Class in org.hkijena.jipipe.api.parameters

Standard implementation of JIPipeParameterTypeInfo

JIPipeDefaultParameterTypeInfo(String, Class<?>, Supplier<Object>, Function<Object, Object>, String, String) - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeDefaultParameterTypeInfo

JIPipeDefaultRegistry - Class in org.hkijena.jipipe

A scijava service that discovers JIPipe plugins in the classpath

JIPipeDefaultRegistry() - Constructor for class org.hkijena.jipipe.JIPipeDefaultRegistry

Create a new registry instance

JIPipeDefaultResultDataSlotPreviewUI - Class in org.hkijena.jipipe.ui.resultanalysis

Renders a JIPipeDataSlot row as table cell

JIPipeDefaultResultDataSlotPreviewUI(JTable) - Constructor for class org.hkijena.jipipe.ui.resultanalysis.JIPipeDefaultResultDataSlotPreviewUI

Creates a new renderer

JIPipeDefaultResultDataSlotRowUI - Class in org.hkijena.jipipe.ui.resultanalysis

Provides a standard result slot UI that can be also further extended.

JIPipeDefaultResultDataSlotRowUI(JIPipeProjectWorkbench, JIPipeDataSlot, JIPipeExportedDataTable.Row) - Constructor for class org.hkijena.jipipe.ui.resultanalysis.JIPipeDefaultResultDataSlotRowUI

Creates a new UI

JIPipeDependency - Interface in org.hkijena.jipipe

Encapsulates a dependency such as an extension or JSON extension

JIPipeDependencyListCellRenderer - Class in org.hkijena.jipipe.ui.extensions

Renders an JIPipeDependency

JIPipeDependencyListCellRenderer() - Constructor for class org.hkijena.jipipe.ui.extensions.JIPipeDependencyListCellRenderer

Creates a new renderer

JIPipeDependencyUI - Class in org.hkijena.jipipe.ui.extensions

Displays an JIPipeDependency

JIPipeDependencyUI(JIPipeDependency) - Constructor for class org.hkijena.jipipe.ui.extensions.JIPipeDependencyUI

Creates a new UI

JIPipeDocumentation - Annotation Type in org.hkijena.jipipe.api

Used within JIPipe to annotate types and methods with documentation

JIPipeDummyParameterCollection - Class in org.hkijena.jipipe.api.parameters

An JIPipeParameterCollection that stores exactly one value (an object) This is used in conjunction with JIPipeManualParameterAccess

JIPipeDummyParameterCollection() - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeDummyParameterCollection

JIPipeDynamicParameterCollection - Class in org.hkijena.jipipe.api.parameters

Holds a user-definable set of parameters

JIPipeDynamicParameterCollection(Class<?>...) - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection

Creates a new instance with user modification enabled

JIPipeDynamicParameterCollection(boolean, Class<?>...) - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection

Creates a new instance

JIPipeDynamicParameterCollection(JIPipeDynamicParameterCollection) - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection

Copies the parameters from the original

JIPipeDynamicParameterCollection(boolean, Set<JIPipeParameterTypeInfo>) - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection

Creates a new instance

JIPipeDynamicParameterCollection.UserParameterDefinition - Class in org.hkijena.jipipe.api.parameters

Parameter definition by a user

JIPipeEmptyNodeInfo - Class in org.hkijena.jipipe.api.nodes

An empty algorithm info.

JIPipeEmptyNodeInfo() - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeEmptyNodeInfo

JIPipeEmptyNodeInfo.Serializer - Class in org.hkijena.jipipe.api.nodes

Serializes the empty algorithm info

JIPipeExportedCompartment - Class in org.hkijena.jipipe.api.compartments

Exported JIPipeProjectCompartment

JIPipeExportedCompartment() - Constructor for class org.hkijena.jipipe.api.compartments.JIPipeExportedCompartment

Creates a new instance

JIPipeExportedCompartment(JIPipeProjectCompartment) - Constructor for class org.hkijena.jipipe.api.compartments.JIPipeExportedCompartment

Initializes the instance from a compartment

JIPipeExportedCompartment.Deserializer - Class in org.hkijena.jipipe.api.compartments

Deserializes the compartment

JIPipeExportedCompartment.Serializer - Class in org.hkijena.jipipe.api.compartments

Serializes the compartment

JIPipeExportedDataTable - Class in org.hkijena.jipipe.api.data

Contains all metadata exported from an JIPipeDataSlot

JIPipeExportedDataTable(JIPipeDataSlot, Path, List<Integer>) - Constructor for class org.hkijena.jipipe.api.data.JIPipeExportedDataTable

Initializes a new table from a slot

JIPipeExportedDataTable() - Constructor for class org.hkijena.jipipe.api.data.JIPipeExportedDataTable

JIPipeExportedDataTable.Row - Class in org.hkijena.jipipe.api.data

A row in the table

JIPipeFixedThreadPool - Class in org.hkijena.jipipe.api

Contains a fixed thread pool.

JIPipeFixedThreadPool(int) - Constructor for class org.hkijena.jipipe.api.JIPipeFixedThreadPool

Initializes a pool with the specified amount of threads.

JIPipeGraph - Class in org.hkijena.jipipe.api.nodes

Manages multiple JIPipeGraphNode instances as graph

JIPipeGraph() - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeGraph

Creates a new node type graph

JIPipeGraph(JIPipeGraph) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeGraph

Creates a deep copy of the other algorithm graph

JIPipeGraph.Deserializer - Class in org.hkijena.jipipe.api.nodes

Deserializes an JIPipeGraph

JIPipeGraph.Serializer - Class in org.hkijena.jipipe.api.nodes

Serializes an JIPipeGraph

JIPipeGraphCanvasUI - Class in org.hkijena.jipipe.ui.grapheditor

UI that displays an JIPipeGraph

JIPipeGraphCanvasUI(JIPipeWorkbench, JIPipeGraph, String) - Constructor for class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

Creates a new UI

JIPipeGraphCompartmentUI - Class in org.hkijena.jipipe.ui.grapheditor

Editor for a project graph compartment

JIPipeGraphCompartmentUI(JIPipeWorkbench, JIPipeGraph, String) - Constructor for class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCompartmentUI

Creates a project graph compartment editor

JIPipeGraphDragAndDropBehavior - Interface in org.hkijena.jipipe.ui.grapheditor

Provides Drag & Drop behavior for JIPipeGraphCanvasUI

JIPipeGraphEdge - Class in org.hkijena.jipipe.api.nodes

A custom graph edge

JIPipeGraphEdge() - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeGraphEdge

Initializes a new graph edge that is not user-disconnectable

JIPipeGraphEdge(boolean) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeGraphEdge

Initializes a new graph edge

JIPipeGraphEditorMinimap - Class in org.hkijena.jipipe.ui.grapheditor

Renders a overview of the graph

JIPipeGraphEditorMinimap(JIPipeGraphEditorUI) - Constructor for class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorMinimap

JIPipeGraphEditorUI - Class in org.hkijena.jipipe.ui.grapheditor

A panel around JIPipeGraphCanvasUI that comes with scrolling/panning, properties panel, and a menu bar

JIPipeGraphEditorUI(JIPipeWorkbench, JIPipeGraph, String) - Constructor for class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

JIPipeGraphEditorUI.NavigationRenderer - Class in org.hkijena.jipipe.ui.grapheditor

Renders items in the navigator

JIPipeGraphHistory - Class in org.hkijena.jipipe.api.history

Manages a Undo-history

JIPipeGraphHistory() - Constructor for class org.hkijena.jipipe.api.history.JIPipeGraphHistory

JIPipeGraphNode - Class in org.hkijena.jipipe.api.nodes

An algorithm is is a set of input and output data slots, and a run() function It is part of the JIPipeGraph.

JIPipeGraphNode(JIPipeNodeInfo, JIPipeSlotConfiguration) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Initializes this algorithm with a custom provided slot configuration and trait configuration

JIPipeGraphNode(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Initializes a new node type instance

JIPipeGraphNode(JIPipeGraphNode) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Copies the input algorithm's properties into this algorithm

JIPipeGraphNode.Serializer - Class in org.hkijena.jipipe.api.nodes

Serializes an JIPipeGraphNode instance

JIPipeGraphRunner - Class in org.hkijena.jipipe.api

Executes an JIPipeGraph.

JIPipeGraphRunner(JIPipeGraph) - Constructor for class org.hkijena.jipipe.api.JIPipeGraphRunner

Creates a new instance

JIPipeGraphViewMode - Enum in org.hkijena.jipipe.ui.grapheditor

The direction how a canvas renders the nodes

JIPipeGUICommand - Class in org.hkijena.jipipe

Command that runs the GUI

JIPipeGUICommand() - Constructor for class org.hkijena.jipipe.JIPipeGUICommand

JIPipeHidden - Annotation Type in org.hkijena.jipipe.api

Marks a class as hidden

JIPipeHorizontalDataSlotUI - Class in org.hkijena.jipipe.ui.grapheditor

Slot UI with horizontal direction

JIPipeHorizontalDataSlotUI(JIPipeWorkbench, JIPipeNodeUI, String, JIPipeDataSlot) - Constructor for class org.hkijena.jipipe.ui.grapheditor.JIPipeHorizontalDataSlotUI

Creates a new UI

JIPipeHorizontalNodeUI - Class in org.hkijena.jipipe.ui.grapheditor

An algorithm UI for horizontal display

JIPipeHorizontalNodeUI(JIPipeWorkbench, JIPipeGraphCanvasUI, JIPipeGraphNode) - Constructor for class org.hkijena.jipipe.ui.grapheditor.JIPipeHorizontalNodeUI

Creates a new UI

JIPipeIconPickerDialog - Class in org.hkijena.jipipe.ui.components

Dialog that picks an icon

JIPipeIconPickerDialog(Window, String, Set<String>) - Constructor for class org.hkijena.jipipe.ui.components.JIPipeIconPickerDialog

JIPipeImageJAdapterRegistry - Class in org.hkijena.jipipe.api.registries

Registers all known adapters between ImageJ and JIPipe data types

JIPipeImageJAdapterRegistry() - Constructor for class org.hkijena.jipipe.api.registries.JIPipeImageJAdapterRegistry

JIPipeImageJPluginManager - Class in org.hkijena.jipipe.ui.ijupdater

JIPipe's own implementation of the ImageJ updater ImageJUpdater

JIPipeImageJPluginManager(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.ui.ijupdater.JIPipeImageJPluginManager

JIPipeImageJPluginManager(JIPipeWorkbench, boolean) - Constructor for class org.hkijena.jipipe.ui.ijupdater.JIPipeImageJPluginManager

JIPipeImageJUpdateSiteDependency - Class in org.hkijena.jipipe

A dependency that points to an ImageJ update site.

JIPipeImageJUpdateSiteDependency() - Constructor for class org.hkijena.jipipe.JIPipeImageJUpdateSiteDependency

JIPipeImageJUpdateSiteDependency(String, String) - Constructor for class org.hkijena.jipipe.JIPipeImageJUpdateSiteDependency

JIPipeImageJUpdateSiteDependency(UpdateSite) - Constructor for class org.hkijena.jipipe.JIPipeImageJUpdateSiteDependency

Initializes the dependency from an update site

JIPipeImageJUpdateSiteDependency(JIPipeImageJUpdateSiteDependency) - Constructor for class org.hkijena.jipipe.JIPipeImageJUpdateSiteDependency

JIPipeImageJUpdateSiteDependency.List - Class in org.hkijena.jipipe

the List class

JIPipeInfoUI - Class in org.hkijena.jipipe.ui

UI that shows some introduction

JIPipeInfoUI(JIPipeProjectWorkbench) - Constructor for class org.hkijena.jipipe.ui.JIPipeInfoUI

Creates a new instance

JIPipeInheritanceConversionListCellRenderer - Class in org.hkijena.jipipe.ui.components

Renders inheritance conversion entries

JIPipeInheritanceConversionListCellRenderer() - Constructor for class org.hkijena.jipipe.ui.components.JIPipeInheritanceConversionListCellRenderer

Creates a new renderer

JIPipeInputSlot - Annotation Type in org.hkijena.jipipe.api.nodes

Annotates an JIPipeGraphNode with an input slot.

JIPipeInputSlots - Annotation Type in org.hkijena.jipipe.api.nodes

Required to allow multiple JIPipeInputSlot

JIPipeIntegrateTableColumnsDialogUI - Class in org.hkijena.jipipe.ui.tableanalyzer

UI for integrating table columns

JIPipeIntegrateTableColumnsDialogUI(ResultsTableData) - Constructor for class org.hkijena.jipipe.ui.tableanalyzer.JIPipeIntegrateTableColumnsDialogUI

JIPipeIOSlotConfiguration - Class in org.hkijena.jipipe.api.nodes

Slot configuration that always ensures 1:1 relation between input and output slots

JIPipeIOSlotConfiguration() - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeIOSlotConfiguration

Creates a new instance

JIPipeIteratingAlgorithm - Class in org.hkijena.jipipe.api.nodes

An JIPipeAlgorithm that iterates through each data row.

JIPipeIteratingAlgorithm(JIPipeNodeInfo, JIPipeSlotConfiguration) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm

Creates a new instance

JIPipeIteratingAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm

Creates a new instance

JIPipeIteratingAlgorithm(JIPipeIteratingAlgorithm) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm

Copies the algorithm

JIPipeIteratingAlgorithm.DataBatchGenerationSettings - Class in org.hkijena.jipipe.api.nodes

Groups data batch generation settings

JIPipeJavaExtension - Interface in org.hkijena.jipipe

A Java extension

JIPipeJavaNodeInfo - Class in org.hkijena.jipipe.api.nodes

JIPipeNodeInfo for an algorithm that is defined in Java code All necessary properties are extracted from class attributes

JIPipeJavaNodeInfo(String, Class<? extends JIPipeGraphNode>) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeJavaNodeInfo

Creates a new node type info

JIPipeJavaNodeInfo.Serializer - Class in org.hkijena.jipipe.api.nodes

Serializes the info

JIPipeJavaNodeRegistrationTask - Class in org.hkijena.jipipe.api.registries

Registers a Java algorithm

JIPipeJavaNodeRegistrationTask(String, Class<? extends JIPipeGraphNode>, JIPipeDependency, URL) - Constructor for class org.hkijena.jipipe.api.registries.JIPipeJavaNodeRegistrationTask

Creates a new registration task

JIPipeJsonAlgorithmExporterMultiSelectionPanelUI - Class in org.hkijena.jipipe.ui.extensionbuilder

Panel shown when multiple algorithms are selected

JIPipeJsonAlgorithmExporterMultiSelectionPanelUI(JIPipeWorkbench, JIPipeGraphCanvasUI, Set<JIPipeGraphNode>) - Constructor for class org.hkijena.jipipe.ui.extensionbuilder.JIPipeJsonAlgorithmExporterMultiSelectionPanelUI

JIPipeJsonAlgorithmExporterSingleSelectionPanelUI - Class in org.hkijena.jipipe.ui.extensionbuilder

Shown when one algorithm is selected

JIPipeJsonAlgorithmExporterSingleSelectionPanelUI(JIPipeGraphEditorUI, JIPipeGraphNode) - Constructor for class org.hkijena.jipipe.ui.extensionbuilder.JIPipeJsonAlgorithmExporterSingleSelectionPanelUI

JIPipeJsonExporter - Class in org.hkijena.jipipe.ui.extensionbuilder

Exports a JsonNodeInfo

JIPipeJsonExporter(JIPipeProjectWorkbench, NodeGroup) - Constructor for class org.hkijena.jipipe.ui.extensionbuilder.JIPipeJsonExporter

Creates a new UI

JIPipeJsonExtension - Class in org.hkijena.jipipe

A JSON-serializable extension

JIPipeJsonExtension() - Constructor for class org.hkijena.jipipe.JIPipeJsonExtension

Creates a new instance

JIPipeJsonExtension.Deserializer - Class in org.hkijena.jipipe

Deserializer for the JIPipeJsonExtension.

JIPipeJsonExtensionContentListUI - Class in org.hkijena.jipipe.ui.extensionbuilder

Lists the content of an JIPipeJsonExtension

JIPipeJsonExtensionContentListUI(JIPipeJsonExtensionWorkbench) - Constructor for class org.hkijena.jipipe.ui.extensionbuilder.JIPipeJsonExtensionContentListUI

Creates new instance

JIPipeJsonExtensionGraphUI - Class in org.hkijena.jipipe.ui.extensionbuilder

Graph editor UI used within an JIPipeJsonExtension

JIPipeJsonExtensionGraphUI(JIPipeJsonExtensionWorkbench, JIPipeGraph, String) - Constructor for class org.hkijena.jipipe.ui.extensionbuilder.JIPipeJsonExtensionGraphUI

Creates a new instance

JIPipeJsonExtensionInfoUI - Class in org.hkijena.jipipe.ui

UI that shows some introduction

JIPipeJsonExtensionInfoUI(JIPipeJsonExtensionWorkbench) - Constructor for class org.hkijena.jipipe.ui.JIPipeJsonExtensionInfoUI

Creates a new instance

JIPipeJsonExtensionMultiAlgorithmSelectionPanelUI - Class in org.hkijena.jipipe.ui.extensionbuilder

Panel shown when multiple algorithms are selected

JIPipeJsonExtensionMultiAlgorithmSelectionPanelUI(JIPipeJsonExtensionWorkbench, JIPipeGraphCanvasUI, Set<JIPipeGraphNode>) - Constructor for class org.hkijena.jipipe.ui.extensionbuilder.JIPipeJsonExtensionMultiAlgorithmSelectionPanelUI

JIPipeJsonExtensionProjectValidation - Class in org.hkijena.jipipe.ui.extensionbuilder

Supplies additional validation only for projects

JIPipeJsonExtensionProjectValidation(JIPipeJsonExtension) - Constructor for class org.hkijena.jipipe.ui.extensionbuilder.JIPipeJsonExtensionProjectValidation

Creates a new instance

JIPipeJsonExtensionSettingsUI - Class in org.hkijena.jipipe.ui.settings

Panel containing algorithm settings when algorithms are edited in a JIPipeJsonExtension

JIPipeJsonExtensionSettingsUI(JIPipeJsonExtensionWorkbench) - Constructor for class org.hkijena.jipipe.ui.settings.JIPipeJsonExtensionSettingsUI

JIPipeJsonExtensionSingleAlgorithmSelectionPanelUI - Class in org.hkijena.jipipe.ui.extensionbuilder

Shown when one algorithm is selected

JIPipeJsonExtensionSingleAlgorithmSelectionPanelUI(JIPipeGraphEditorUI, JIPipeGraphNode) - Constructor for class org.hkijena.jipipe.ui.extensionbuilder.JIPipeJsonExtensionSingleAlgorithmSelectionPanelUI

JIPipeJsonExtensionWindow - Class in org.hkijena.jipipe.ui

Window that displays JIPipeJsonExtension UIs

JIPipeJsonExtensionWindow(Context, JIPipeJsonExtension, boolean) - Constructor for class org.hkijena.jipipe.ui.JIPipeJsonExtensionWindow

Creates a new instance

JIPipeJsonExtensionWorkbench - Class in org.hkijena.jipipe.ui

UI around a JIPipeJsonExtension

JIPipeJsonExtensionWorkbench(JIPipeJsonExtensionWindow, Context, JIPipeJsonExtension, boolean) - Constructor for class org.hkijena.jipipe.ui.JIPipeJsonExtensionWorkbench

JIPipeJsonExtensionWorkbenchPanel - Class in org.hkijena.jipipe.ui

UI panel that contains references to an JIPipeJsonExtension UI

JIPipeJsonExtensionWorkbenchPanel(JIPipeJsonExtensionWorkbench) - Constructor for class org.hkijena.jipipe.ui.JIPipeJsonExtensionWorkbenchPanel

JIPipeLauncher - Class in org.hkijena.jipipe

JIPipeLauncher() - Constructor for class org.hkijena.jipipe.JIPipeLauncher

JIPipeLauncher.WindowWatcher - Class in org.hkijena.jipipe

JIPipeManualParameterAccess - Class in org.hkijena.jipipe.api.parameters

A custom parameter access

JIPipeManualParameterAccess.Builder - Class in org.hkijena.jipipe.api.parameters

A builder for JIPipeManualParameterAccess

JIPipeMergedDataSlotTable - Class in org.hkijena.jipipe.api.data

Merges multiple JIPipeDataSlot

JIPipeMergedDataSlotTable(JTable) - Constructor for class org.hkijena.jipipe.api.data.JIPipeMergedDataSlotTable

JIPipeMergedDataSlotTableColumnHeaderRenderer - Class in org.hkijena.jipipe.ui.resultanalysis

Renders the column header in merged JIPipeExportedDataTable instances

JIPipeMergedDataSlotTableColumnHeaderRenderer(JIPipeMergedExportedDataTable) - Constructor for class org.hkijena.jipipe.ui.resultanalysis.JIPipeMergedDataSlotTableColumnHeaderRenderer

JIPipeMergedExportedDataTable - Class in org.hkijena.jipipe.api.data

Merges multiple JIPipeExportedDataTable

JIPipeMergedExportedDataTable() - Constructor for class org.hkijena.jipipe.api.data.JIPipeMergedExportedDataTable

JIPipeMergedResultDataSlotTableUI - Class in org.hkijena.jipipe.ui.resultanalysis

Displays the result of multiple JIPipeDataSlot

JIPipeMergedResultDataSlotTableUI(JIPipeProjectWorkbench, JIPipeRun, List<JIPipeDataSlot>) - Constructor for class org.hkijena.jipipe.ui.resultanalysis.JIPipeMergedResultDataSlotTableUI

JIPipeMergeTablesDialogUI - Class in org.hkijena.jipipe.ui.tableanalyzer

UI that merges tables

JIPipeMergeTablesDialogUI(JIPipeTableEditor) - Constructor for class org.hkijena.jipipe.ui.tableanalyzer.JIPipeMergeTablesDialogUI

Creates new instance

JIPipeMergingAlgorithm - Class in org.hkijena.jipipe.api.nodes

An JIPipeAlgorithm that applies a similar algorithm to JIPipeIteratingAlgorithm, but does create JIPipeMergingDataBatch instead.

JIPipeMergingAlgorithm(JIPipeNodeInfo, JIPipeSlotConfiguration) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm

Creates a new instance

JIPipeMergingAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm

Creates a new instance

JIPipeMergingAlgorithm(JIPipeMergingAlgorithm) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm

Copies the algorithm

JIPipeMergingAlgorithm.DataBatchGenerationSettings - Class in org.hkijena.jipipe.api.nodes

JIPipeMergingDataBatch - Class in org.hkijena.jipipe.api.nodes

Wraps a set of input and output slots that belong together.

JIPipeMergingDataBatch(JIPipeGraphNode) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch

Creates a new interface

JIPipeMergingDataBatch(JIPipeMergingDataBatch) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch

Creates a copy

JIPipeMetadata - Class in org.hkijena.jipipe.api

JSON-serializable project metadata

JIPipeMetadata() - Constructor for class org.hkijena.jipipe.api.JIPipeMetadata

Creates new empty instance

JIPipeMetadata(JIPipeMetadata) - Constructor for class org.hkijena.jipipe.api.JIPipeMetadata

Copies metadata

JIPipeMultiAlgorithmSelectionPanelUI - Class in org.hkijena.jipipe.ui.grapheditor.settings

UI when multiple algorithms are selected

JIPipeMultiAlgorithmSelectionPanelUI(JIPipeProjectWorkbench, JIPipeGraphCanvasUI, Set<JIPipeGraphNode>) - Constructor for class org.hkijena.jipipe.ui.grapheditor.settings.JIPipeMultiAlgorithmSelectionPanelUI

JIPipeMultiCompartmentSelectionPanelUI - Class in org.hkijena.jipipe.ui.compartments

UI when multiple JIPipeProjectCompartment instances are selected

JIPipeMultiCompartmentSelectionPanelUI(JIPipeProjectWorkbench, Set<JIPipeProjectCompartment>, JIPipeGraphCanvasUI) - Constructor for class org.hkijena.jipipe.ui.compartments.JIPipeMultiCompartmentSelectionPanelUI

JIPipeMutableDependency - Class in org.hkijena.jipipe

A JSON-serializable JIPipeDependency.

JIPipeMutableDependency() - Constructor for class org.hkijena.jipipe.JIPipeMutableDependency

Creates a new instance

JIPipeMutableDependency(JIPipeDependency) - Constructor for class org.hkijena.jipipe.JIPipeMutableDependency

Copies the dependency

JIPipeMutableNodeInfo - Class in org.hkijena.jipipe.api.nodes

Instantiates JIPipeGraphNode instances

JIPipeMutableNodeInfo() - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeMutableNodeInfo

JIPipeMutableParameterAccess - Class in org.hkijena.jipipe.api.parameters

A mutable implementation of JIPipeParameterAccess

JIPipeMutableParameterAccess() - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess

Creates a new instance

JIPipeMutableParameterAccess(JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess

Creates a new independent parameter from the provided access

JIPipeMutableParameterAccess(JIPipeParameterCollection, String, Class<?>) - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess

Creates a new instance

JIPipeMutableParameterAccess(JIPipeMutableParameterAccess) - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess

Copies the parameter access

JIPipeMutableParameterAccess.Deserializer - Class in org.hkijena.jipipe.api.parameters

Deserializes JIPipeMutableParameterAccess

JIPipeMutableSlotConfiguration - Interface in org.hkijena.jipipe.api.data

A slot configuration that can be changed.

JIPipeNamedParameterCollection - Interface in org.hkijena.jipipe.api.parameters

An JIPipeParameterCollection that comes with a predefined name

JIPipeNodeGroupUI - Class in org.hkijena.jipipe.ui.grouping

Editor for a NodeGroup Contains a JIPipeGraphCompartmentUI instance that allows editing the compartment's content

JIPipeNodeGroupUI(JIPipeWorkbench, NodeGroup) - Constructor for class org.hkijena.jipipe.ui.grouping.JIPipeNodeGroupUI

Creates a new editor

JIPipeNodeInfo - Interface in org.hkijena.jipipe.api.nodes

Describes an JIPipeGraphNode

JIPipeNodeInfoListCellRenderer - Class in org.hkijena.jipipe.ui.components

Renderer for JIPipeNodeInfo

JIPipeNodeInfoListCellRenderer() - Constructor for class org.hkijena.jipipe.ui.components.JIPipeNodeInfoListCellRenderer

Creates a new renderer

JIPipeNodeInfoPicker - Class in org.hkijena.jipipe.ui.components

Panel that allows to pick JIPipeNodeInfo

JIPipeNodeInfoPicker(JIPipeNodeInfoPicker.Mode, Set<JIPipeNodeInfo>) - Constructor for class org.hkijena.jipipe.ui.components.JIPipeNodeInfoPicker

JIPipeNodeInfoPicker.AlgorithmDeselectedEvent - Class in org.hkijena.jipipe.ui.components

Generated when a trait is deselected

JIPipeNodeInfoPicker.Mode - Enum in org.hkijena.jipipe.ui.components

The mode of the picker

JIPipeNodeInfoPicker.NodeSelectedEvent - Class in org.hkijena.jipipe.ui.components

Generated when a trait is selected

JIPipeNodeInfoPicker.Renderer - Class in org.hkijena.jipipe.ui.components

Renders the entries

JIPipeNodeInfoPicker.SelectedTraitsChangedEvent - Class in org.hkijena.jipipe.ui.components

Generated when a trait is selected

JIPipeNodeInfoRef - Class in org.hkijena.jipipe.extensions.parameters.references

A parameter that holds a reference to an JIPipeNodeInfo

JIPipeNodeInfoRef(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.parameters.references.JIPipeNodeInfoRef

JIPipeNodeInfoRef(JIPipeNodeInfoRef) - Constructor for class org.hkijena.jipipe.extensions.parameters.references.JIPipeNodeInfoRef

Creates a copy

JIPipeNodeInfoRef() - Constructor for class org.hkijena.jipipe.extensions.parameters.references.JIPipeNodeInfoRef

New instance

JIPipeNodeInfoRef.Deserializer - Class in org.hkijena.jipipe.extensions.parameters.references

Deserializes the reference from a string

JIPipeNodeInfoRef.Serializer - Class in org.hkijena.jipipe.extensions.parameters.references

Serializes the reference as ID

JIPipeNodeInfoRefParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.editors

Parameter for JIPipeNodeInfoRef

JIPipeNodeInfoRefParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.editors.JIPipeNodeInfoRefParameterEditorUI

JIPipeNodeRegistrationTask - Interface in org.hkijena.jipipe.api.registries

A task for algorithm registration that can handle algorithm dependencies

JIPipeNodeRegistry - Class in org.hkijena.jipipe.api.registries

Manages known algorithms and their annotations

JIPipeNodeRegistry() - Constructor for class org.hkijena.jipipe.api.registries.JIPipeNodeRegistry

Creates a new registry

JIPipeNodeTableCellRenderer - Class in org.hkijena.jipipe.ui.resultanalysis

Renders JIPipeGraphNode instances in a table cell

JIPipeNodeTableCellRenderer() - Constructor for class org.hkijena.jipipe.ui.resultanalysis.JIPipeNodeTableCellRenderer

Creates a new renderer

JIPipeNodeTypeCategory - Interface in org.hkijena.jipipe.api.nodes

Describes a node category

JIPipeNodeUI - Class in org.hkijena.jipipe.ui.grapheditor

UI around an JIPipeGraphNode instance

JIPipeNodeUI(JIPipeWorkbench, JIPipeGraphCanvasUI, JIPipeGraphNode, JIPipeGraphViewMode) - Constructor for class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI

Creates a new UI

JIPipeOpenTableFromImageJDialogUI - Class in org.hkijena.jipipe.ui.tableanalyzer

UI that merges tables

JIPipeOpenTableFromImageJDialogUI(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.ui.tableanalyzer.JIPipeOpenTableFromImageJDialogUI

Creates new instance

JIPipeOrganization - Annotation Type in org.hkijena.jipipe.api

Annotations used for organizing elements

JIPipeOutputSlot - Annotation Type in org.hkijena.jipipe.api.nodes

Annotates an JIPipeGraphNode with an output slot.

JIPipeOutputSlots - Annotation Type in org.hkijena.jipipe.api.nodes

Required to allow multiple JIPipeOutputSlot

JIPipeParallelizedAlgorithm - Interface in org.hkijena.jipipe.api.nodes

Algorithm that supports parallelization

JIPipeParameter - Annotation Type in org.hkijena.jipipe.api.parameters

Annotates a getter or setter function as parameter.

JIPipeParameterAccess - Interface in org.hkijena.jipipe.api.parameters

Interface around accessing a parameter

JIPipeParameterCollection - Interface in org.hkijena.jipipe.api.parameters

Interfaced for a parameterized object

JIPipeParameterCollectionParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.util

JIPipeParameterCollectionParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.util.JIPipeParameterCollectionParameterEditorUI

Creates new instance

JIPipeParameterCollectionVisibilities - Class in org.hkijena.jipipe.api.parameters

Used as parameter to control the visibility of an existing parameter collection

JIPipeParameterCollectionVisibilities() - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeParameterCollectionVisibilities

Creates new instance

JIPipeParameterCollectionVisibilities(JIPipeParameterCollectionVisibilities) - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeParameterCollectionVisibilities

Creates a copy

JIPipeParameterCollectionVisibilitiesParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.editors

UI around JIPipeParameterCollectionVisibilities

JIPipeParameterCollectionVisibilitiesParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.editors.JIPipeParameterCollectionVisibilitiesParameterEditorUI

Creates new instance

JIPipeParameterEditorUI - Class in org.hkijena.jipipe.ui.parameters

A UI for a parameter type

JIPipeParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.ui.parameters.JIPipeParameterEditorUI

Creates new instance

JIPipeParameterGeneratorUI - Class in org.hkijena.jipipe.ui.parameters

UI that generates a set of parameter values

JIPipeParameterGeneratorUI(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.ui.parameters.JIPipeParameterGeneratorUI

Creates a new instance

JIPipeParameterPersistence - Enum in org.hkijena.jipipe.api.parameters

Determines how a parameter is serialized

JIPipeParameterSlotAlgorithm - Class in org.hkijena.jipipe.api.nodes

An JIPipeAlgorithm that has an optional slot that allows to supply parameter data sets.

JIPipeParameterSlotAlgorithm(JIPipeNodeInfo, JIPipeSlotConfiguration) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

JIPipeParameterSlotAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

JIPipeParameterSlotAlgorithm(JIPipeParameterSlotAlgorithm) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

JIPipeParameterSlotAlgorithm.ParameterSlotAlgorithmSettings - Class in org.hkijena.jipipe.api.nodes

Groups parameter slot settings

JIPipeParameterTree - Class in org.hkijena.jipipe.api.parameters

An JIPipeParameterCollection that contains all the parameters of one or multiple JIPipeParameterCollection instances in a traversed form.

JIPipeParameterTree() - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeParameterTree

JIPipeParameterTree(JIPipeParameterCollection) - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeParameterTree

Creates a new instance with a predefined root parameter

JIPipeParameterTree(JIPipeParameterCollection, int) - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeParameterTree

Creates a new instance with a predefined root parameter

JIPipeParameterTree.ContextAction - Class in org.hkijena.jipipe.api.parameters

JIPipeParameterTree.Node - Class in org.hkijena.jipipe.api.parameters

A node

JIPipeParameterTypeInfo - Interface in org.hkijena.jipipe.api.parameters

A type that describes a JIPipe parameter type

JIPipeParameterTypeInfoListCellRenderer - Class in org.hkijena.jipipe.ui.components

JIPipeParameterTypeInfoListCellRenderer() - Constructor for class org.hkijena.jipipe.ui.components.JIPipeParameterTypeInfoListCellRenderer

JIPipeParameterTypeRegistry - Class in org.hkijena.jipipe.api.registries

Registry for all known parameter types

JIPipeParameterTypeRegistry() - Constructor for class org.hkijena.jipipe.api.registries.JIPipeParameterTypeRegistry

JIPipeParameterVisibility - Enum in org.hkijena.jipipe.api.parameters

Defines the visibility of a parameter

JIPipePlotAvailableDataManagerUI - Class in org.hkijena.jipipe.ui.plotbuilder

Manages available data sets of a plot builder

JIPipePlotAvailableDataManagerUI(JIPipeWorkbench, JIPipePlotBuilderUI) - Constructor for class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotAvailableDataManagerUI

JIPipePlotBuilderUI - Class in org.hkijena.jipipe.ui.plotbuilder

User interface for displaying and creating plots

JIPipePlotBuilderUI(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotBuilderUI

JIPipePlotSeriesBuilder - Class in org.hkijena.jipipe.ui.plotbuilder

Constructs a series from a set of columns

JIPipePlotSeriesBuilder(JIPipePlotBuilderUI, JIPipeDataInfo) - Constructor for class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotSeriesBuilder

Creates a new instance

JIPipePlotSeriesBuilderUI - Class in org.hkijena.jipipe.ui.plotbuilder

UI for JIPipePlotSeriesBuilder

JIPipePlotSeriesBuilderUI(JIPipeWorkbench, JIPipePlotSeriesBuilder) - Constructor for class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotSeriesBuilderUI

JIPipePlotSeriesListEditorUI - Class in org.hkijena.jipipe.ui.plotbuilder

Manages the list of series in a JIPipePlotBuilderUI

JIPipePlotSeriesListEditorUI(JIPipeWorkbench, JIPipePlotBuilderUI) - Constructor for class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotSeriesListEditorUI

Creates a new instance

JIPipePluginManagerUIPanel - Class in org.hkijena.jipipe.ui.extensions

UI that lists all plugins

JIPipePluginManagerUIPanel(JIPipeProjectWorkbench) - Constructor for class org.hkijena.jipipe.ui.extensions.JIPipePluginManagerUIPanel

JIPipePluginValidityCheckerButton - Class in org.hkijena.jipipe.ui.extensions

Button that checks the plugin validity and shows the report if clicked

JIPipePluginValidityCheckerButton() - Constructor for class org.hkijena.jipipe.ui.extensions.JIPipePluginValidityCheckerButton

Creates new instance

JIPipePluginValidityCheckerPanel - Class in org.hkijena.jipipe.ui.extensions

Panel that checks plugin validity

JIPipePluginValidityCheckerPanel() - Constructor for class org.hkijena.jipipe.ui.extensions.JIPipePluginValidityCheckerPanel

Creates new instance

JIPipePrepackagedDefaultJavaExtension - Class in org.hkijena.jipipe.extensions

JIPipeDefaultJavaExtension for internal usage

JIPipePrepackagedDefaultJavaExtension() - Constructor for class org.hkijena.jipipe.extensions.JIPipePrepackagedDefaultJavaExtension

JIPipeProject - Class in org.hkijena.jipipe.api

A JIPipe project.

JIPipeProject() - Constructor for class org.hkijena.jipipe.api.JIPipeProject

A JIPipe project

JIPipeProject.Deserializer - Class in org.hkijena.jipipe.api

Deserializes a project

JIPipeProject.Serializer - Class in org.hkijena.jipipe.api

Serializes a project

JIPipeProjectCache - Class in org.hkijena.jipipe.api

A structure that manages cached data

JIPipeProjectCache(JIPipeProject) - Constructor for class org.hkijena.jipipe.api.JIPipeProjectCache

Creates a new instance

JIPipeProjectCache.ModifiedEvent - Class in org.hkijena.jipipe.api

Event that is triggered when the cache was modified (something stored or removed)

JIPipeProjectCache.State - Class in org.hkijena.jipipe.api

Encapsulates a state

JIPipeProjectCompartment - Class in org.hkijena.jipipe.api.compartments.algorithms

A project compartment.

JIPipeProjectCompartment(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.api.compartments.algorithms.JIPipeProjectCompartment

Creates new instance

JIPipeProjectCompartment(JIPipeProjectCompartment) - Constructor for class org.hkijena.jipipe.api.compartments.algorithms.JIPipeProjectCompartment

Copies the compartment

JIPipeProjectCompartmentTableCellRenderer - Class in org.hkijena.jipipe.ui.resultanalysis

Renders an JIPipeProjectCompartment cell

JIPipeProjectCompartmentTableCellRenderer() - Constructor for class org.hkijena.jipipe.ui.resultanalysis.JIPipeProjectCompartmentTableCellRenderer

Creates new instance

JIPipeProjectInfoParameters - Class in org.hkijena.jipipe.ui.settings

Additional metadata that provides parameter references for JIPipeProjectInfoUI

JIPipeProjectInfoParameters() - Constructor for class org.hkijena.jipipe.ui.settings.JIPipeProjectInfoParameters

JIPipeProjectInfoUI - Class in org.hkijena.jipipe.ui

UI that gives an overview of a pipeline (shows parameters, etc.)

JIPipeProjectInfoUI(JIPipeProjectWorkbench) - Constructor for class org.hkijena.jipipe.ui.JIPipeProjectInfoUI

Creates a new instance

JIPipeProjectMetadata - Class in org.hkijena.jipipe.api

Metadata for a JIPipeProject

JIPipeProjectMetadata() - Constructor for class org.hkijena.jipipe.api.JIPipeProjectMetadata

JIPipeProjectSettingsUI - Class in org.hkijena.jipipe.ui.settings

UI around the metadata of an JIPipeProject

JIPipeProjectSettingsUI(JIPipeProjectWorkbench) - Constructor for class org.hkijena.jipipe.ui.settings.JIPipeProjectSettingsUI

JIPipeProjectTabMetadata - Class in org.hkijena.jipipe.ui.project

Metadata that allows the restoration of tabs

JIPipeProjectTabMetadata() - Constructor for class org.hkijena.jipipe.ui.project.JIPipeProjectTabMetadata

JIPipeProjectTabMetadata(JIPipeProjectWorkbench) - Constructor for class org.hkijena.jipipe.ui.project.JIPipeProjectTabMetadata

JIPipeProjectTemplate - Class in org.hkijena.jipipe.api

A reference to a template project

JIPipeProjectTemplate() - Constructor for class org.hkijena.jipipe.api.JIPipeProjectTemplate

JIPipeProjectWindow - Class in org.hkijena.jipipe.ui

Window that holds an JIPipeProjectWorkbench instance

JIPipeProjectWindow(Context, JIPipeProject, boolean, boolean) - Constructor for class org.hkijena.jipipe.ui.JIPipeProjectWindow

JIPipeProjectWorkbench - Class in org.hkijena.jipipe.ui

UI around an JIPipeProject

JIPipeProjectWorkbench(JIPipeProjectWindow, Context, JIPipeProject, boolean, boolean) - Constructor for class org.hkijena.jipipe.ui.JIPipeProjectWorkbench

JIPipeProjectWorkbenchPanel - Class in org.hkijena.jipipe.ui

Panel that holds a reference to JIPipeProjectWorkbench

JIPipeProjectWorkbenchPanel(JIPipeProjectWorkbench) - Constructor for class org.hkijena.jipipe.ui.JIPipeProjectWorkbenchPanel

JIPipeReflectionParameterAccess - Class in org.hkijena.jipipe.api.parameters

JIPipeParameterAccess generated from reflection

JIPipeReflectionParameterAccess() - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess

JIPipeRegistry - Interface in org.hkijena.jipipe

Contains all JIPipe resources

JIPipeRegistryIssues - Class in org.hkijena.jipipe

Class that describes issues with the current registration process

JIPipeRegistryIssues() - Constructor for class org.hkijena.jipipe.JIPipeRegistryIssues

JIPipeResultAlgorithmTree - Class in org.hkijena.jipipe.ui.resultanalysis

Displays a tree where the user can select data slots

JIPipeResultAlgorithmTree(JIPipeProjectWorkbench, JIPipeRun) - Constructor for class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultAlgorithmTree

JIPipeResultDataSlotPreviewUI - Class in org.hkijena.jipipe.ui.resultanalysis

Renders a JIPipeDataSlot row as table cell

JIPipeResultDataSlotPreviewUI(JTable) - Constructor for class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultDataSlotPreviewUI

Creates a new renderer

JIPipeResultDataSlotRowUI - Class in org.hkijena.jipipe.ui.resultanalysis

A UI that contains various actions for importing/processing output data Please note that the data is not present in the data slot anymore at this point, but instead stored in output files.

JIPipeResultDataSlotRowUI(JIPipeProjectWorkbench, JIPipeDataSlot, JIPipeExportedDataTable.Row) - Constructor for class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultDataSlotRowUI

JIPipeResultDataSlotTableUI - Class in org.hkijena.jipipe.ui.resultanalysis

UI that displays the JIPipeExportedDataTable of an JIPipeDataSlot

JIPipeResultDataSlotTableUI(JIPipeProjectWorkbench, JIPipeRun, JIPipeDataSlot) - Constructor for class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultDataSlotTableUI

JIPipeResultTreeCellRenderer - Class in org.hkijena.jipipe.ui.resultanalysis

Renders the tree in JIPipeResultAlgorithmTree

JIPipeResultTreeCellRenderer() - Constructor for class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultTreeCellRenderer

Creates new renderer

JIPipeResultUI - Class in org.hkijena.jipipe.ui.resultanalysis

UI around an JIPipeRun result

JIPipeResultUI(JIPipeProjectWorkbench, JIPipeRun) - Constructor for class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultUI

JIPipeRowDataMergedTableCellRenderer - Class in org.hkijena.jipipe.ui.resultanalysis

Renders data in JIPipeMergedExportedDataTable

JIPipeRowDataMergedTableCellRenderer(JIPipeProjectWorkbench, JIPipeMergedExportedDataTable) - Constructor for class org.hkijena.jipipe.ui.resultanalysis.JIPipeRowDataMergedTableCellRenderer

JIPipeRowDataTableCellRenderer - Class in org.hkijena.jipipe.ui.resultanalysis

Renders row data of an JIPipeExportedDataTable

JIPipeRowDataTableCellRenderer(JIPipeProjectWorkbench, JIPipeDataSlot) - Constructor for class org.hkijena.jipipe.ui.resultanalysis.JIPipeRowDataTableCellRenderer

JIPipeRowIndexTableCellRenderer - Class in org.hkijena.jipipe.ui.resultanalysis

Renders the location of of JIPipeExportedDataTable and JIPipeMergedExportedDataTable

JIPipeRowIndexTableCellRenderer() - Constructor for class org.hkijena.jipipe.ui.resultanalysis.JIPipeRowIndexTableCellRenderer

Creates new renderer

JIPipeRun - Class in org.hkijena.jipipe.api

Runnable instance of an JIPipeProject

JIPipeRun(JIPipeProject, JIPipeRunSettings) - Constructor for class org.hkijena.jipipe.api.JIPipeRun

JIPipeRunAlgorithmCommand - Class in org.hkijena.jipipe

Runs a JIPipe algorithm on a single data set.

JIPipeRunAlgorithmCommand() - Constructor for class org.hkijena.jipipe.JIPipeRunAlgorithmCommand

JIPipeRunCommand - Class in org.hkijena.jipipe

Command that runs a JIPipe project without GUI

JIPipeRunCommand() - Constructor for class org.hkijena.jipipe.JIPipeRunCommand

JIPipeRunExecuterUI - Class in org.hkijena.jipipe.ui.running

UI that executes an JIPipeRunnable

JIPipeRunExecuterUI(JIPipeRunnable) - Constructor for class org.hkijena.jipipe.ui.running.JIPipeRunExecuterUI

JIPipeRunnable - Interface in org.hkijena.jipipe.api

Runnable that can be scheduled, canceled, and reports progress

JIPipeRunnerQueue - Class in org.hkijena.jipipe.ui.running

Queue for JIPipeRunnable

JIPipeRunnerQueueUI - Class in org.hkijena.jipipe.ui.running

UI that monitors the queue

JIPipeRunnerQueueUI() - Constructor for class org.hkijena.jipipe.ui.running.JIPipeRunnerQueueUI

Creates new instance

JIPipeRunnerStatus - Class in org.hkijena.jipipe.api

Status of a runner

JIPipeRunnerStatus(int, int, String) - Constructor for class org.hkijena.jipipe.api.JIPipeRunnerStatus

JIPipeRunnerSubStatus - Class in org.hkijena.jipipe.api

A nestable

JIPipeRunnerSubStatus() - Constructor for class org.hkijena.jipipe.api.JIPipeRunnerSubStatus

JIPipeRunSettings - Class in org.hkijena.jipipe.api

Settings for an JIPipeRun

JIPipeRunSettings() - Constructor for class org.hkijena.jipipe.api.JIPipeRunSettings

JIPipeRunSettingsUI - Class in org.hkijena.jipipe.ui.running

Settings UI for JIPipeRunSettings

JIPipeRunSettingsUI(JIPipeProjectWorkbench) - Constructor for class org.hkijena.jipipe.ui.running.JIPipeRunSettingsUI

JIPipeRunWorker - Class in org.hkijena.jipipe.ui.running

A worker

JIPipeRunWorker(JIPipeRunnable) - Constructor for class org.hkijena.jipipe.ui.running.JIPipeRunWorker

JIPipeSettingsRegistry - Class in org.hkijena.jipipe.api.registries

Registry for settings.

JIPipeSettingsRegistry() - Constructor for class org.hkijena.jipipe.api.registries.JIPipeSettingsRegistry

JIPipeSettingsRegistry.Sheet - Class in org.hkijena.jipipe.api.registries

A settings sheet

JIPipeSimpleIteratingAlgorithm - Class in org.hkijena.jipipe.api.nodes

An JIPipeAlgorithm that iterates through each data row.

JIPipeSimpleIteratingAlgorithm(JIPipeNodeInfo, JIPipeSlotConfiguration) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeSimpleIteratingAlgorithm

Creates a new instance

JIPipeSimpleIteratingAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeSimpleIteratingAlgorithm

Creates a new instance

JIPipeSimpleIteratingAlgorithm(JIPipeSimpleIteratingAlgorithm) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeSimpleIteratingAlgorithm

Copies the algorithm

JIPipeSingleAlgorithmSelectionPanelUI - Class in org.hkijena.jipipe.ui.grapheditor.settings

UI for a single JIPipeGraphNode

JIPipeSingleAlgorithmSelectionPanelUI(JIPipeGraphEditorUI, JIPipeGraphNode) - Constructor for class org.hkijena.jipipe.ui.grapheditor.settings.JIPipeSingleAlgorithmSelectionPanelUI

JIPipeSingleCompartmentSelectionPanelUI - Class in org.hkijena.jipipe.ui.compartments

UI for a single JIPipeProjectCompartment

JIPipeSingleCompartmentSelectionPanelUI(JIPipeGraphEditorUI, JIPipeProjectCompartment) - Constructor for class org.hkijena.jipipe.ui.compartments.JIPipeSingleCompartmentSelectionPanelUI

JIPipeSlotConfiguration - Interface in org.hkijena.jipipe.api.data

A slot configuration determines which slots an JIPipeGraphNode should have.

JIPipeSlotConfiguration.Serializer - Class in org.hkijena.jipipe.api.data

Serializes the configuration

JIPipeSlotEditorUI - Class in org.hkijena.jipipe.ui.grapheditor.settings

An extended slot editor that is more powerful than the "in-place" slot editor

JIPipeSlotEditorUI(JIPipeGraphEditorUI, JIPipeGraphNode) - Constructor for class org.hkijena.jipipe.ui.grapheditor.settings.JIPipeSlotEditorUI

JIPipeSlotType - Enum in org.hkijena.jipipe.api.data

The slot type

JIPipeStandardDragAndDropBehavior - Class in org.hkijena.jipipe.ui.grapheditor

Installs Drag&Drop features that create filesystem nodes

JIPipeStandardDragAndDropBehavior() - Constructor for class org.hkijena.jipipe.ui.grapheditor.JIPipeStandardDragAndDropBehavior

JIPipeTableEditor - Class in org.hkijena.jipipe.ui.tableanalyzer

Spreadsheet UI

JIPipeTableEditor(JIPipeWorkbench, ResultsTableData) - Constructor for class org.hkijena.jipipe.ui.tableanalyzer.JIPipeTableEditor

JIPipeTableImporterDialog - Class in org.hkijena.jipipe.ui.tableanalyzer

Dialog to import a table

JIPipeTableImporterDialog(JIPipeProjectWorkbench) - Constructor for class org.hkijena.jipipe.ui.tableanalyzer.JIPipeTableImporterDialog

JIPipeTableRegistry - Class in org.hkijena.jipipe.api.registries

Registry for table operations

JIPipeTableRegistry() - Constructor for class org.hkijena.jipipe.api.registries.JIPipeTableRegistry

JIPipeTableRegistry.ColumnOperationEntry - Class in org.hkijena.jipipe.api.registries

A column operation entry

JIPipeTemplateSelectionDialog - Class in org.hkijena.jipipe.ui.project

Dialog for selecting templates

JIPipeTemplateSelectionDialog(Window) - Constructor for class org.hkijena.jipipe.ui.project.JIPipeTemplateSelectionDialog

JIPipeTestBench - Class in org.hkijena.jipipe.api.testbench

Allows to test one algorithm with multiple parameters

JIPipeTestBench(JIPipeProject, JIPipeGraphNode, JIPipeTestBenchSettings) - Constructor for class org.hkijena.jipipe.api.testbench.JIPipeTestBench

JIPipeTestBenchSettings - Class in org.hkijena.jipipe.api.testbench

Settings for JIPipeTestBench

JIPipeTestBenchSettings() - Constructor for class org.hkijena.jipipe.api.testbench.JIPipeTestBenchSettings

Creates a new instance

JIPipeTestBenchSetupUI - Class in org.hkijena.jipipe.ui.grapheditor.settings

UI for generating JIPipeTestBench

JIPipeTestBenchSetupUI(JIPipeProjectWorkbench, JIPipeGraphNode) - Constructor for class org.hkijena.jipipe.ui.grapheditor.settings.JIPipeTestBenchSetupUI

JIPipeTestbenchSnapshot - Class in org.hkijena.jipipe.api.testbench

Used by the quick run to backup output data

JIPipeTestbenchSnapshot(JIPipeTestBench) - Constructor for class org.hkijena.jipipe.api.testbench.JIPipeTestbenchSnapshot

JIPipeTestbenchSnapshot.AlgorithmBackup - Class in org.hkijena.jipipe.api.testbench

Backups parameters and storage paths

JIPipeTestBenchUI - Class in org.hkijena.jipipe.ui.testbench

UI for JIPipeTestBench

JIPipeTestBenchUI(JIPipeProjectWorkbench, JIPipeTestBench) - Constructor for class org.hkijena.jipipe.ui.testbench.JIPipeTestBenchUI

JIPipeTextEditor - Class in org.hkijena.jipipe.ui.texteditor

JIPipeTextEditor(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.ui.texteditor.JIPipeTextEditor

JIPipeTraitTableCellRenderer - Class in org.hkijena.jipipe.ui.resultanalysis

Renders JIPipeAnnotation

JIPipeTraitTableCellRenderer() - Constructor for class org.hkijena.jipipe.ui.resultanalysis.JIPipeTraitTableCellRenderer

Creates a new renderer

JIPipeUIDatatypeRegistry - Class in org.hkijena.jipipe.ui.registries

Registry for data types

JIPipeUIDatatypeRegistry() - Constructor for class org.hkijena.jipipe.ui.registries.JIPipeUIDatatypeRegistry

New registry

JIPipeUIImageJDatatypeAdapterRegistry - Class in org.hkijena.jipipe.ui.registries

Registry for ImageJDatatypeAdapter UIs

JIPipeUIImageJDatatypeAdapterRegistry() - Constructor for class org.hkijena.jipipe.ui.registries.JIPipeUIImageJDatatypeAdapterRegistry

JIPipeUIMenuServiceRegistry - Class in org.hkijena.jipipe.ui.registries

Registry for menu extensions

JIPipeUIMenuServiceRegistry() - Constructor for class org.hkijena.jipipe.ui.registries.JIPipeUIMenuServiceRegistry

JIPipeUINodeRegistry - Class in org.hkijena.jipipe.ui.registries

Registry for algorithms

JIPipeUINodeRegistry() - Constructor for class org.hkijena.jipipe.ui.registries.JIPipeUINodeRegistry

Creates new instance

JIPipeUIParameterTypeRegistry - Class in org.hkijena.jipipe.ui.registries

Registry for parameter types

JIPipeUIParameterTypeRegistry() - Constructor for class org.hkijena.jipipe.ui.registries.JIPipeUIParameterTypeRegistry

New instance

JIPipeValidatable - Interface in org.hkijena.jipipe.api

An interface about a type that reports of the validity of its internal state

JIPipeValidityReport - Class in org.hkijena.jipipe.api

Report about the validity of an object

JIPipeValidityReport() - Constructor for class org.hkijena.jipipe.api.JIPipeValidityReport

Creates a new report instance

JIPipeValidityReport.Message - Class in org.hkijena.jipipe.api

A validity report message

JIPipeValidityReport.Response - Enum in org.hkijena.jipipe.api

The response type

JIPipeValidityReportUI - Class in org.hkijena.jipipe.ui.components

UI for an JIPipeValidityReport

JIPipeValidityReportUI(boolean) - Constructor for class org.hkijena.jipipe.ui.components.JIPipeValidityReportUI

JIPipeValidityReportUI(boolean, MarkdownDocument) - Constructor for class org.hkijena.jipipe.ui.components.JIPipeValidityReportUI

JIPipeVerticalDataSlotUI - Class in org.hkijena.jipipe.ui.grapheditor

Slot UI with horizontal direction

JIPipeVerticalDataSlotUI(JIPipeWorkbench, JIPipeNodeUI, String, JIPipeDataSlot) - Constructor for class org.hkijena.jipipe.ui.grapheditor.JIPipeVerticalDataSlotUI

Creates a new UI

JIPipeVerticalNodeUI - Class in org.hkijena.jipipe.ui.grapheditor

An algorithm UI for vertical display

JIPipeVerticalNodeUI(JIPipeWorkbench, JIPipeGraphCanvasUI, JIPipeGraphNode) - Constructor for class org.hkijena.jipipe.ui.grapheditor.JIPipeVerticalNodeUI

Creates a new UI

JIPipeWorkbench - Interface in org.hkijena.jipipe.ui

Interface shared by all workbench UIs

JIPipeWorkbenchPanel - Class in org.hkijena.jipipe.ui

Panel that contains a reference to its parent workbench

JIPipeWorkbenchPanel(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.ui.JIPipeWorkbenchPanel

JsonAlgorithm - Class in org.hkijena.jipipe.api.grouping

An algorithm that was imported from a Json extension.

JsonAlgorithm(JsonNodeInfo) - Constructor for class org.hkijena.jipipe.api.grouping.JsonAlgorithm

Creates a new instance

JsonAlgorithm(GraphWrapperAlgorithm) - Constructor for class org.hkijena.jipipe.api.grouping.JsonAlgorithm

Makes a copy

JsonAlgorithmToGroupNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu

JsonAlgorithmToGroupNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.JsonAlgorithmToGroupNodeUIContextAction

JsonData - Class in org.hkijena.jipipe.extensions.strings

JsonData(String) - Constructor for class org.hkijena.jipipe.extensions.strings.JsonData

JsonData(StringData) - Constructor for class org.hkijena.jipipe.extensions.strings.JsonData

JSONDataSlotRowUI - Class in org.hkijena.jipipe.extensions.strings

JSONDataSlotRowUI(JIPipeProjectWorkbench, JIPipeDataSlot, JIPipeExportedDataTable.Row) - Constructor for class org.hkijena.jipipe.extensions.strings.JSONDataSlotRowUI

Creates a new UI

JsonDeserializable - Interface in org.hkijena.jipipe.utils

Allows the object to be deserialized in-place from JSON data

JsonExtensionContentListCellRenderer - Class in org.hkijena.jipipe.ui.extensionbuilder

Renders the contents of a JIPipeJsonExtension

JsonExtensionContentListCellRenderer() - Constructor for class org.hkijena.jipipe.ui.extensionbuilder.JsonExtensionContentListCellRenderer

Creates a new renderer

JsonExtensionLoaderExtension - Class in org.hkijena.jipipe.extensions.jsonextensionloader

Extension that loads JIPipeJsonExtension

JsonExtensionLoaderExtension() - Constructor for class org.hkijena.jipipe.extensions.jsonextensionloader.JsonExtensionLoaderExtension

JsonExtensionRegistrationTask - Class in org.hkijena.jipipe.extensions.jsonextensionloader

Registers a JIPipeJsonExtension

JsonExtensionRegistrationTask(JIPipeDefaultRegistry, Path, JsonNode) - Constructor for class org.hkijena.jipipe.extensions.jsonextensionloader.JsonExtensionRegistrationTask

jsonify(String) - Static method in class org.hkijena.jipipe.utils.StringUtils

Removes all spaces, and filesystem-unsafe characters from the string and replaces them with dashes Duplicate dashes are removed

JsonNodeInfo - Class in org.hkijena.jipipe.api.grouping

Info of a GraphWrapperAlgorithm

JsonNodeInfo() - Constructor for class org.hkijena.jipipe.api.grouping.JsonNodeInfo

Creates a new info

JsonNodeInfo(NodeGroup) - Constructor for class org.hkijena.jipipe.api.grouping.JsonNodeInfo

Creates a new JsonNodeInfo from a NodeGroup

JsonNodeInfoUI - Class in org.hkijena.jipipe.ui.extensionbuilder

UI around a JsonNodeInfo

JsonNodeInfoUI(JIPipeJsonExtensionWorkbench, JsonNodeInfo) - Constructor for class org.hkijena.jipipe.ui.extensionbuilder.JsonNodeInfoUI

JsonNodeRegistrationTask - Class in org.hkijena.jipipe.api.grouping

Registers a JsonNodeInfo

JsonNodeRegistrationTask(JsonNode, JIPipeJsonExtension) - Constructor for class org.hkijena.jipipe.api.grouping.JsonNodeRegistrationTask

JsonUtils - Class in org.hkijena.jipipe.utils

Global utilities for JSON data

K

KEY_PARAMETER - Static variable in class org.hkijena.jipipe.extensions.settings.FileChooserSettings

Path key for any parameter

KEY_PROJECT - Static variable in class org.hkijena.jipipe.extensions.settings.FileChooserSettings

Path key for project locations

KEY_STROKE_AUTO_LAYOUT - Static variable in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

KEY_STROKE_NAVIGATE - Static variable in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

KEY_STROKE_REDO - Static variable in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

KEY_STROKE_UNDO - Static variable in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

KEY_STROKE_ZOOM_IN - Static variable in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

KEY_STROKE_ZOOM_OUT - Static variable in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

KEY_STROKE_ZOOM_RESET - Static variable in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

KeyDeserializer() - Constructor for class org.hkijena.jipipe.api.data.JIPipeDataInfo.KeyDeserializer

L

LaplacianSharpen2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.sharpen

Wrapper around ImageProcessor

LaplacianSharpen2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.sharpen.LaplacianSharpen2DAlgorithm

Instantiates a new node type.

LaplacianSharpen2DAlgorithm(LaplacianSharpen2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.sharpen.LaplacianSharpen2DAlgorithm

Instantiates a new node type.

LargeScriptParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.scripts

An editor for ScriptParameter

LargeScriptParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.scripts.LargeScriptParameterEditorUI

Creates new instance

LIGHT_GRAY - Static variable in class org.hkijena.jipipe.utils.ModernMetalTheme

LineCategoryPlotData - Class in org.hkijena.jipipe.extensions.plots.datatypes

Generates a bar category plot

LineCategoryPlotData() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.LineCategoryPlotData

Creates a new instance

LineCategoryPlotData(LineCategoryPlotData) - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.LineCategoryPlotData

Creates a copy

LineStatisticalCategoryPlotData - Class in org.hkijena.jipipe.extensions.plots.datatypes

Generates a bar category plot

LineStatisticalCategoryPlotData() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.LineStatisticalCategoryPlotData

Creates a new instance

LineStatisticalCategoryPlotData(LineStatisticalCategoryPlotData) - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.LineStatisticalCategoryPlotData

Creates a copy

LineXYPlotData - Class in org.hkijena.jipipe.extensions.plots.datatypes

Generates a bar category plot

LineXYPlotData() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.LineXYPlotData

Creates a new instance

LineXYPlotData(LineXYPlotData) - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.LineXYPlotData

Creates a copy

List() - Constructor for class org.hkijena.jipipe.api.JIPipeAuthorMetadata.List

Creates a new instance

List(Collection<JIPipeAuthorMetadata>) - Constructor for class org.hkijena.jipipe.api.JIPipeAuthorMetadata.List

Makes a copy

List() - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.HyperstackDimensionPair.List

List(HyperstackDimensionPair.List) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.HyperstackDimensionPair.List

List() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.MeasurementColumnSortOrder.List

Creates a new instance

List(MeasurementColumnSortOrder.List) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.MeasurementColumnSortOrder.List

Creates a copy

List() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.MeasurementFilter.List

Creates a new instance

List(MeasurementFilter.List) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.MeasurementFilter.List

Creates a copy

List() - Constructor for class org.hkijena.jipipe.extensions.parameters.functions.StringPatternExtractionFunction.List

Creates new instance

List(StringPatternExtractionFunction.List) - Constructor for class org.hkijena.jipipe.extensions.parameters.functions.StringPatternExtractionFunction.List

Creates a copy

List() - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.DoubleAndDoublePair.List

Creates a new instance

List(DoubleAndDoublePair.List) - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.DoubleAndDoublePair.List

Creates a copy

List() - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.IntegerAndIntegerPair.List

Creates a new instance

List(IntegerAndIntegerPair.List) - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.IntegerAndIntegerPair.List

Creates a copy

List() - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.IntRangeAndIntegerPair.List

Creates a new instance

List(IntRangeAndIntegerPair.List) - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.IntRangeAndIntegerPair.List

Creates a copy

List() - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.StringAndStringOrDoublePair.List

Creates a new instance

List(StringAndStringOrDoublePair.List) - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.StringAndStringOrDoublePair.List

Creates a copy

List() - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.StringAndStringPair.List

Creates a new instance

List(StringAndStringPair.List) - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.StringAndStringPair.List

Creates a copy

List() - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.StringAndStringPredicatePair.List

Creates a new instance

List(StringAndStringPredicatePair.List) - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.StringAndStringPredicatePair.List

Creates a copy

List() - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.StringFilterAndSortOrderPair.List

Creates a new instance

List(StringFilterAndSortOrderPair.List) - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.StringFilterAndSortOrderPair.List

Creates a copy

List() - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.StringFilterAndStringOrDoubleFilterPair.List

Creates a new instance

List(StringFilterAndStringOrDoubleFilterPair.List) - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.StringFilterAndStringOrDoubleFilterPair.List

Creates a copy

List() - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.StringFilterAndStringPair.List

Creates a new instance

List(StringFilterAndStringPair.List) - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.StringFilterAndStringPair.List

Creates a copy

List() - Constructor for class org.hkijena.jipipe.extensions.parameters.patterns.StringPatternExtraction.List

Creates a new instance

List(StringPatternExtraction.List) - Constructor for class org.hkijena.jipipe.extensions.parameters.patterns.StringPatternExtraction.List

Creates a copy

List() - Constructor for class org.hkijena.jipipe.extensions.parameters.predicates.DoublePredicate.List

Creates a new instance

List(DoublePredicate.List) - Constructor for class org.hkijena.jipipe.extensions.parameters.predicates.DoublePredicate.List

Creates a copy

List() - Constructor for class org.hkijena.jipipe.extensions.parameters.predicates.PathPredicate.List

Creates a new instance

List(PathPredicate.List) - Constructor for class org.hkijena.jipipe.extensions.parameters.predicates.PathPredicate.List

Creates a copy

List() - Constructor for class org.hkijena.jipipe.extensions.parameters.predicates.StringOrDoublePredicate.List

Creates a new instance

List(StringOrDoublePredicate.List) - Constructor for class org.hkijena.jipipe.extensions.parameters.predicates.StringOrDoublePredicate.List

Creates a copy

List() - Constructor for class org.hkijena.jipipe.extensions.parameters.predicates.StringPredicate.List

Creates a new instance

List(StringPredicate.List) - Constructor for class org.hkijena.jipipe.extensions.parameters.predicates.StringPredicate.List

Creates a copy

List() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.StringOrDouble.List

Creates a new instance

List(StringOrDouble.List) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.StringOrDouble.List

Creates a copy

List() - Constructor for class org.hkijena.jipipe.extensions.parameters.roi.Margin.List

Creates a new instance

List(Margin.List) - Constructor for class org.hkijena.jipipe.extensions.parameters.roi.Margin.List

Creates a copy

List() - Constructor for class org.hkijena.jipipe.JIPipeImageJUpdateSiteDependency.List

ListFiles - Class in org.hkijena.jipipe.extensions.filesystem.algorithms

Algorithm that lists files in each folder

ListFiles(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ListFiles

Creates new instance

ListFiles(ListFiles) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ListFiles

Copies the algorithm

listIssues() - Method in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog

ListParameter<T> - Class in org.hkijena.jipipe.extensions.parameters.collections

A parameter that is a collection of another parameter type

ListParameter(Class<T>) - Constructor for class org.hkijena.jipipe.extensions.parameters.collections.ListParameter

ListParameter.Deserializer<T> - Class in org.hkijena.jipipe.extensions.parameters.collections

Deserializes the parameter

ListParameter.Serializer - Class in org.hkijena.jipipe.extensions.parameters.collections

Serializes the parameter

ListParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.collections

Generic parameter for ListParameter

ListParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.collections.ListParameterEditorUI

Creates new instance

ListParameterItemParameterAccess<T> - Class in org.hkijena.jipipe.extensions.parameters.collections

Parameter access for one entry in ListParameter

ListParameterItemParameterAccess(JIPipeParameterAccess, List<T>, Class<T>, int) - Constructor for class org.hkijena.jipipe.extensions.parameters.collections.ListParameterItemParameterAccess

Creates a new instance

ListSubfolders - Class in org.hkijena.jipipe.extensions.filesystem.algorithms

Algorithms that lists the sub folders for each input folder

ListSubfolders(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ListSubfolders

Creates a new instance

ListSubfolders(ListSubfolders) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ListSubfolders

Copies the algorithm

listTemplates() - Static method in class org.hkijena.jipipe.api.JIPipeProjectTemplate

Lists all available templates

LnColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting

Applies a logarithm (base e) function

LnColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.LnColumnOperation

load() - Method in class org.hkijena.jipipe.api.JIPipeProjectTemplate

Loads the project

load(Path) - Method in class org.hkijena.jipipe.api.registries.JIPipeSettingsRegistry

Loads settings from the specified file

loadData(Path) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImageDataPreviewUI

loadData(Path) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageDataPreviewUI

loadData(Path) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ROIDataPreviewUI

loadData(Path) - Method in class org.hkijena.jipipe.extensions.plots.ui.resultanalysis.PlotDataSlotPreviewUI

loadData(Path) - Method in class org.hkijena.jipipe.extensions.tables.ResultsTableDataPreviewUI

loadData(Path) - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeAsyncResultDataPlotPreviewUI

Run in a different thread.

loadDependenciesFromJson(JsonNode) - Static method in class org.hkijena.jipipe.api.JIPipeProject

Deserializes the set of project dependencies from JSON.

loadFromFolder(Path, JIPipeValidityReport) - Static method in class org.hkijena.jipipe.api.JIPipeRun

Loads a JIPipeRun from a folder

loadFromJson(Path) - Static method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable

Loads the table from JSON

loadLookAndFeelFromSettings() - Static method in class org.hkijena.jipipe.utils.UIUtils

Attempts to override the look & feel based on the JIPipe settings

loadMetadataFromJson(JsonNode) - Static method in class org.hkijena.jipipe.api.JIPipeProject

Deserializes the project metadata from JSON

loadProject(Path, JIPipeValidityReport) - Static method in class org.hkijena.jipipe.api.JIPipeProject

Loads a project from a file

loadProject(JsonNode) - Static method in class org.hkijena.jipipe.JIPipeJsonExtension

Loads a JIPipeJsonExtension from JSON

loadProject(Path) - Static method in class org.hkijena.jipipe.JIPipeJsonExtension

Loads an extension from a file

loadProject(JIPipeJsonExtension, boolean) - Method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWindow

Loads a project into the window and replaces the current project

loadProject(JIPipeProject, boolean, boolean) - Method in class org.hkijena.jipipe.ui.JIPipeProjectWindow

Loads a project into the window

loadRoiListFromFile(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData

Loads a set of ROI from a zip file

LocalMaxima2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features

Wrapper around MaximumFinder

LocalMaxima2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.LocalMaxima2DAlgorithm

Instantiates a new node type.

LocalMaxima2DAlgorithm(LocalMaxima2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.LocalMaxima2DAlgorithm

Creates a copy

LocalMaxima2DAlgorithm.OutputType - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features

Available output types

LocalMaximumFilter2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math

Wrapper around RankFilters

LocalMaximumFilter2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMaximumFilter2DAlgorithm

Instantiates a new node type.

LocalMaximumFilter2DAlgorithm(LocalMaximumFilter2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMaximumFilter2DAlgorithm

Instantiates a new node type.

LocalMaximumFilter3DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math

Wrapper around RankFilters

LocalMaximumFilter3DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMaximumFilter3DAlgorithm

Instantiates a new node type.

LocalMaximumFilter3DAlgorithm(LocalMaximumFilter3DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMaximumFilter3DAlgorithm

Instantiates a new node type.

LocalMinimumFilter2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math

Wrapper around RankFilters

LocalMinimumFilter2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMinimumFilter2DAlgorithm

Instantiates a new node type.

LocalMinimumFilter2DAlgorithm(LocalMinimumFilter2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMinimumFilter2DAlgorithm

Instantiates a new node type.

LocalMinimumFilter3DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math

Wrapper around RankFilters

LocalMinimumFilter3DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMinimumFilter3DAlgorithm

Instantiates a new node type.

LocalMinimumFilter3DAlgorithm(LocalMinimumFilter3DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMinimumFilter3DAlgorithm

Instantiates a new node type.

LocalVarianceFilter2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math

Wrapper around RankFilters

LocalVarianceFilter2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalVarianceFilter2DAlgorithm

Instantiates a new node type.

LocalVarianceFilter2DAlgorithm(LocalVarianceFilter2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalVarianceFilter2DAlgorithm

Instantiates a new node type.

LocalVarianceFilter3DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math

Wrapper around RankFilters

LocalVarianceFilter3DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalVarianceFilter3DAlgorithm

Instantiates a new node type.

LocalVarianceFilter3DAlgorithm(LocalVarianceFilter3DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalVarianceFilter3DAlgorithm

Instantiates a new node type.

logicalAnd() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData

Applies a logical AND operation to all Roi in this list.

LogicalOperation - Enum in org.hkijena.jipipe.extensions.parameters.util

Available operations

logicalOr() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData

Applies a logical OR operation to all Roi in this list.

logicalXor() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData

Applies a logical XOR operation on the list of Roi.

LongParameterTypeInfo - Class in org.hkijena.jipipe.extensions.parameters.primitives

Info for Long

LongParameterTypeInfo() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.LongParameterTypeInfo

LongPrimitiveParameterTypeInfo - Class in org.hkijena.jipipe.extensions.parameters.primitives

Info for Long

LongPrimitiveParameterTypeInfo() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.LongPrimitiveParameterTypeInfo

LongRangeParameterGenerator - Class in org.hkijena.jipipe.extensions.parameters.generators

Generates Long

LongRangeParameterGenerator(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.extensions.parameters.generators.LongRangeParameterGenerator

Creates a new instance

LUTInverterAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut

LUTInverterAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.LUTInverterAlgorithm

LUTInverterAlgorithm(LUTInverterAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.LUTInverterAlgorithm

M

MacroFlag - Class in org.hkijena.jipipe.utils

Helper for optional macro flags

MacroFlag(String, boolean) - Constructor for class org.hkijena.jipipe.utils.MacroFlag

MacroSetting - Class in org.hkijena.jipipe.utils

Helper class for ImageJ macro parameters

MacroSetting(String, Object) - Constructor for class org.hkijena.jipipe.utils.MacroSetting

MacroUtils - Class in org.hkijena.jipipe.utils

Utility functions for macros

MacroWrapperAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1

An algorithm that wraps around an ImageJ macro

MacroWrapperAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.MacroWrapperAlgorithm

MacroWrapperAlgorithm(MacroWrapperAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.MacroWrapperAlgorithm

Copies the algorithm

main(String[]) - Static method in class org.hkijena.jipipe.extensions.clij2.GenerateDocumentationUtil

main(String...) - Static method in class org.hkijena.jipipe.JIPipeGUICommand

main(String...) - Static method in class org.hkijena.jipipe.JIPipeLauncher

main(String[]) - Static method in class org.hkijena.jipipe.JIPipeRunAlgorithmCommand

main(String[]) - Static method in class org.hkijena.jipipe.ui.components.SplashScreen

makeBorderlessReadonlyTextPane(String) - Static method in class org.hkijena.jipipe.utils.UIUtils

Creates a readonly text pane (that can do HTML)

makeBorderlessWithoutMargin(AbstractButton) - Static method in class org.hkijena.jipipe.utils.UIUtils

Makes a component borderless

makeFilesystemCompatible(String) - Static method in class org.hkijena.jipipe.utils.StringUtils

Replaces all characters invalid for filesystems with spaces Assumes that the string is a filename, so path operators are not allowed.

makeFlat(AbstractButton) - Static method in class org.hkijena.jipipe.utils.UIUtils

Makes a button flat

makeFlat(AbstractButton, Color, int, int, int, int) - Static method in class org.hkijena.jipipe.utils.UIUtils

Makes a button flat

makeFlat25x25(AbstractButton) - Static method in class org.hkijena.jipipe.utils.UIUtils

Makes a button flat and 25x25 size

makeFlatH25(AbstractButton) - Static method in class org.hkijena.jipipe.utils.UIUtils

Makes a button flat and have a height of 25px

makeMacroCompatible(String) - Static method in class org.hkijena.jipipe.utils.MacroUtils

Makes a string macro-compatible

makeMarkdownReader(MarkdownDocument, String[]) - Static method in class org.hkijena.jipipe.utils.UIUtils

Creates a JTextPane that displays Markdown content

makeMontage2(ImagePlus, int, int, double, int, int, int, int, boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm

Creates a montage and returns it as an ImagePlus.

makeReadonlyBorderlessTextArea(String) - Static method in class org.hkijena.jipipe.utils.UIUtils

Creates a readonly text area

makeReadonlyBorderlessTextField(String) - Static method in class org.hkijena.jipipe.utils.UIUtils

Creates a readonly text field

makeReadonlyTextArea(String) - Static method in class org.hkijena.jipipe.utils.UIUtils

Creates a readonly text area Cannot do HTML.

makeReadonlyTextField(String) - Static method in class org.hkijena.jipipe.utils.UIUtils

Creates a readonly text field

makeReadonlyTextPane(String) - Static method in class org.hkijena.jipipe.utils.UIUtils

Creates a readonly text pane (that can do HTML)

makeToggleReadonly(JToggleButton) - Static method in class org.hkijena.jipipe.utils.UIUtils

Makes a toggle button readonly without greying it out

makeUniqueString(String, String, Collection<String>) - Static method in class org.hkijena.jipipe.utils.StringUtils

Makes an unique string by adding a counting variable to its end if it already exists

makeUniqueString(String, String, Predicate<String>) - Static method in class org.hkijena.jipipe.utils.StringUtils

Makes an unique string by adding a counting variable to its end if it already exists

makeURLLabel(String) - Static method in class org.hkijena.jipipe.utils.UIUtils

Makes a label that contains a URL and opens the URL when clicked

ManagerUI - Class in org.hkijena.jipipe.ui.ijupdater

ManagerUI(JIPipeWorkbench, JIPipeImageJPluginManager) - Constructor for class org.hkijena.jipipe.ui.ijupdater.ManagerUI

ManualThreshold16U2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold

Wrapper around ImageProcessor

ManualThreshold16U2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.ManualThreshold16U2DAlgorithm

Instantiates a new node type.

ManualThreshold16U2DAlgorithm(ManualThreshold16U2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.ManualThreshold16U2DAlgorithm

Instantiates a new node type.

ManualThreshold8U2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold

Wrapper around ImageProcessor

ManualThreshold8U2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.ManualThreshold8U2DAlgorithm

Instantiates a new node type.

ManualThreshold8U2DAlgorithm(ManualThreshold8U2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.ManualThreshold8U2DAlgorithm

Instantiates a new node type.

Margin - Class in org.hkijena.jipipe.extensions.parameters.roi

Parameter that allows users to define a rectangle ROI.

Margin() - Constructor for class org.hkijena.jipipe.extensions.parameters.roi.Margin

Creates a new instance

Margin(Margin) - Constructor for class org.hkijena.jipipe.extensions.parameters.roi.Margin

Creates a copy

Margin.List - Class in org.hkijena.jipipe.extensions.parameters.roi

List parameter of Margin

MarginParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.roi

Editor for Margin

MarginParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.roi.MarginParameterEditorUI

MarkdownDocument - Class in org.hkijena.jipipe.ui.components

Contains Markdown data

MarkdownDocument(String) - Constructor for class org.hkijena.jipipe.ui.components.MarkdownDocument

MarkdownReader - Class in org.hkijena.jipipe.ui.components

Panel that allows reading of Markdown data

MarkdownReader(boolean) - Constructor for class org.hkijena.jipipe.ui.components.MarkdownReader

MarkdownReader(boolean, MarkdownDocument) - Constructor for class org.hkijena.jipipe.ui.components.MarkdownReader

matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.AlgorithmGraphCopyNodeUIContextAction

matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.AlgorithmGraphPasteNodeUIContextAction

matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.GraphCompartmentCopyNodeUIContextAction

matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.GraphCompartmentPasteNodeUIContextAction

matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.CollapseIOInterfaceNodeUIContextAction

matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DeleteCompartmentUIContextAction

matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DeleteNodeUIContextAction

matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisableNodeUIContextAction

matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisablePassThroughNodeUIContextAction

matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisableSaveOutputsNodeUIContextAction

matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnableNodeUIContextAction

matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnablePassThroughNodeUIContextAction

matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnableSaveOutputsNodeUIContextAction

matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportCompartmentAsJsonNodeUIContextAction

matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportCompartmentToNodeUIContextAction

matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportNodeUIContextAction

matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.GroupNodeUIContextAction

matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.InvertSelectionNodeUIContextAction

matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.IsolateNodesUIContextAction

matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.JsonAlgorithmToGroupNodeUIContextAction

matches(Set<JIPipeNodeUI>) - Method in interface org.hkijena.jipipe.ui.grapheditor.contextmenu.NodeUIContextAction

Returns if the action shows up

matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.RunAndShowResultsNodeUIContextAction

matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.SelectAllNodeUIContextAction

matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.SelectAndMoveNodeHereNodeUIContextAction

matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.UpdateCacheNodeUIContextAction

Matrix2D<T> - Class in org.hkijena.jipipe.extensions.parameters.matrix

A 2D matrix of floats

Matrix2D(Class<T>) - Constructor for class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2D

Creates a new instance

Matrix2D(Matrix2D<T>) - Constructor for class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2D

Creates a copy

Matrix2D.Deserializer<T> - Class in org.hkijena.jipipe.extensions.parameters.matrix

Deserializes the parameter

Matrix2D.Serializer - Class in org.hkijena.jipipe.extensions.parameters.matrix

Serializes the parameter

Matrix2DFloat - Class in org.hkijena.jipipe.extensions.parameters.matrix

Matrix containing Float

Matrix2DFloat() - Constructor for class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2DFloat

Creates a new object

Matrix2DFloat(Matrix2DFloat) - Constructor for class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2DFloat

Creates a copy

Matrix2DParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.matrix

Editor for Matrix2D

Matrix2DParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2DParameterEditorUI

Creates new instance

max - Variable in class org.hkijena.jipipe.utils.PointRange

maybeAddSeparator() - Method in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog

measure(ImagePlus, ImageStatisticsSetParameter) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData

Generates ROI statistics

Measurement - Enum in org.hkijena.jipipe.extensions.imagejdatatypes.util.measure

Measurements defined by Measurements.

MeasurementColumn - Enum in org.hkijena.jipipe.extensions.imagejdatatypes.util.measure

Measurements defined by Measurements.

MeasurementColumnSortOrder - Class in org.hkijena.jipipe.extensions.imagejdatatypes.util.measure

A key-value pair parameter of MeasurementColumn to SortOrder

MeasurementColumnSortOrder() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.MeasurementColumnSortOrder

Creates a new instance

MeasurementColumnSortOrder(MeasurementColumnSortOrder) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.MeasurementColumnSortOrder

Creates a copy

MeasurementColumnSortOrder.List - Class in org.hkijena.jipipe.extensions.imagejdatatypes.util.measure

A list of MeasurementColumnSortOrder

MeasurementFilter - Class in org.hkijena.jipipe.extensions.imagejdatatypes.util.measure

A key-value pair structure that allows to model filtering by measurements

MeasurementFilter() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.MeasurementFilter

Creates a new instance

MeasurementFilter(MeasurementFilter) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.MeasurementFilter

Creates a copy

MeasurementFilter.List - Class in org.hkijena.jipipe.extensions.imagejdatatypes.util.measure

A list of MeasurementFilter

MedianBlurFilter2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur

Wrapper around RankFilters

MedianBlurFilter2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurFilter2DAlgorithm

Instantiates a new node type.

MedianBlurFilter2DAlgorithm(MedianBlurFilter2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurFilter2DAlgorithm

Instantiates a new node type.

MedianBlurFilter3DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur

Wrapper around GaussianBlur

MedianBlurFilter3DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurFilter3DAlgorithm

Instantiates a new node type.

MedianBlurFilter3DAlgorithm(MedianBlurFilter3DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurFilter3DAlgorithm

Instantiates a new node type.

MedianBlurGreyscale8U2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur

Wrapper around ImageProcessor

MedianBlurGreyscale8U2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurGreyscale8U2DAlgorithm

Instantiates a new node type.

MedianBlurGreyscale8U2DAlgorithm(MedianBlurGreyscale8U2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurGreyscale8U2DAlgorithm

Instantiates a new node type.

MedianBlurRGB2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur

Wrapper around ImageProcessor

MedianBlurRGB2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurRGB2DAlgorithm

Instantiates a new node type.

MedianBlurRGB2DAlgorithm(MedianBlurRGB2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurRGB2DAlgorithm

Instantiates a new node type.

MEDIUM_GRAY - Static variable in class org.hkijena.jipipe.utils.ModernMetalTheme

MeijeringVesselness2DFeatures - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features

Applies CLAHE image enhancing

MeijeringVesselness2DFeatures(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.MeijeringVesselness2DFeatures

MeijeringVesselness2DFeatures(MeijeringVesselness2DFeatures) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.MeijeringVesselness2DFeatures

Copies the algorithm

MemoryStatusUI - Class in org.hkijena.jipipe.ui.components

Shows the current memory consumption

MemoryStatusUI() - Constructor for class org.hkijena.jipipe.ui.components.MemoryStatusUI

Creates a new instance

MENU_DISABLED_FOREGROUND - Static variable in class org.hkijena.jipipe.utils.ModernMetalTheme

menuBar - Variable in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

MenuExtension - Class in org.hkijena.jipipe.ui.extension

An extension for the extension builder or analysis tool menu.

MenuExtension(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.ui.extension.MenuExtension

Creates a new instance

MenuTarget - Enum in org.hkijena.jipipe.ui.extension

Determines in which menu a menu extension is placed

merge(String, String) - Method in enum org.hkijena.jipipe.api.data.JIPipeAnnotationMergeStrategy

Merges the new annotation value into the existing one according to the strategy

merge(JIPipeParameterCollection, JIPipeParameterTree.Node) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree

Merges parameters into a given node

MergeAnnotations - Class in org.hkijena.jipipe.extensions.annotation.algorithms

Algorithm that merges the annotations of all inputs and outputs the data with the shared annotations

MergeAnnotations(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.MergeAnnotations

Creates a new instance

MergeAnnotations(MergeAnnotations) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.MergeAnnotations

Creates a copy

MergeChannelsAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color

Wrapper around ImageProcessor

MergeChannelsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.MergeChannelsAlgorithm

Instantiates a new node type.

MergeChannelsAlgorithm(MergeChannelsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.MergeChannelsAlgorithm

Instantiates a new node type.

MergeChannelsAlgorithm.ChannelColor - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color

Color a slice can be mapped to

mergeColumns(List<Integer>, String, String, String) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Creates a new column that consists of a combination of the selected values.

MergeColumnsAlgorithm - Class in org.hkijena.jipipe.extensions.tables.algorithms

Algorithm that integrates columns

MergeColumnsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.MergeColumnsAlgorithm

Creates a new instance

MergeColumnsAlgorithm(MergeColumnsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.MergeColumnsAlgorithm

Creates a copy

MergeDataSlots - Class in org.hkijena.jipipe.extensions.annotation.algorithms

Merges the input slot tables into one data slot

MergeDataSlots(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.MergeDataSlots

MergeDataSlots(MergeDataSlots) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.MergeDataSlots

Copies the algorithm

MergeRoiListsAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

Wrapper around RoiManager

MergeRoiListsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.MergeRoiListsAlgorithm

Instantiates a new node type.

MergeRoiListsAlgorithm(MergeRoiListsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.MergeRoiListsAlgorithm

Instantiates a new node type.

MergeTablesAlgorithm - Class in org.hkijena.jipipe.extensions.tables.algorithms

Algorithm that integrates columns

MergeTablesAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.MergeTablesAlgorithm

Creates a new instance

MergeTablesAlgorithm(MergeTablesAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.MergeTablesAlgorithm

Creates a copy

mergeWith(JIPipeGraph) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Merges another graph into this graph The input is not copied!

mergeWith(ROIListData) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData

Merges the ROI from another data into this one.

mergeWith(ResultsTableData) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Merges another results table into this one

MERGING_ALGORITHM_DESCRIPTION - Static variable in class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm

MergingPythonScriptAlgorithm - Class in org.hkijena.jipipe.extensions.python

An algorithm that allows to run Python code

MergingPythonScriptAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.python.MergingPythonScriptAlgorithm

Creates a new instance

MergingPythonScriptAlgorithm(MergingPythonScriptAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.python.MergingPythonScriptAlgorithm

Creates a copy

Message(String, String, String, String) - Constructor for class org.hkijena.jipipe.api.JIPipeValidityReport.Message

Message(MessagePanel, MessagePanel.MessageType, String, JButton) - Constructor for class org.hkijena.jipipe.ui.components.MessagePanel.Message

messageLogged(LogMessage) - Method in class org.hkijena.jipipe.ui.components.SplashScreen

MessagePanel - Class in org.hkijena.jipipe.ui.components

Panel that carries multiple user-friendly messages

MessagePanel() - Constructor for class org.hkijena.jipipe.ui.components.MessagePanel

MessagePanel.Message - Class in org.hkijena.jipipe.ui.components

MessagePanel.MessageType - Enum in org.hkijena.jipipe.ui.components

METADATA_KEY - Static variable in class org.hkijena.jipipe.ui.project.JIPipeProjectTabMetadata

METADATA_KEY - Static variable in class org.hkijena.jipipe.ui.settings.JIPipeProjectInfoParameters

MetalUtils - Class in org.hkijena.jipipe.utils

Copy of MetalUtils because someone decided to make it internal-access only

min - Variable in class org.hkijena.jipipe.utils.PointRange

minimumLayoutSize(Container) - Method in class org.hkijena.jipipe.ui.components.ModifiedFlowLayout

minTabWidth - Variable in class org.hkijena.jipipe.utils.CustomTabbedPaneUI

MiscellaneousNodeTypeCategory - Class in org.hkijena.jipipe.api.nodes.categories

MiscellaneousNodeTypeCategory() - Constructor for class org.hkijena.jipipe.api.nodes.categories.MiscellaneousNodeTypeCategory

MissingUpdateSiteResolver - Class in org.hkijena.jipipe.ui.ijupdater

MissingUpdateSiteResolver(Context, JIPipeRegistryIssues) - Constructor for class org.hkijena.jipipe.ui.ijupdater.MissingUpdateSiteResolver

ModernMetalTheme - Class in org.hkijena.jipipe.utils

ModernMetalTheme() - Constructor for class org.hkijena.jipipe.utils.ModernMetalTheme

Creates an instance of OceanTheme

ModifiedEvent(JIPipeProjectCache) - Constructor for class org.hkijena.jipipe.api.JIPipeProjectCache.ModifiedEvent

Creates a new event

ModifiedFlowLayout - Class in org.hkijena.jipipe.ui.components

A modified version of FlowLayout that allows containers using this Layout to behave in a reasonable manner when placed inside a JScrollPane

ModifiedFlowLayout() - Constructor for class org.hkijena.jipipe.ui.components.ModifiedFlowLayout

ModifiedFlowLayout(int) - Constructor for class org.hkijena.jipipe.ui.components.ModifiedFlowLayout

ModifiedFlowLayout(int, int, int) - Constructor for class org.hkijena.jipipe.ui.components.ModifiedFlowLayout

ModifyAndMergeTablesScript - Class in org.hkijena.jipipe.extensions.tables.algorithms

Algorithm that annotates all data with the same annotation

ModifyAndMergeTablesScript(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.ModifyAndMergeTablesScript

ModifyAndMergeTablesScript(ModifyAndMergeTablesScript) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.ModifyAndMergeTablesScript

Copies the algorithm

ModifyAnnotationScript - Class in org.hkijena.jipipe.extensions.annotation.algorithms

Algorithm that annotates all data with the same annotation

ModifyAnnotationScript(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.ModifyAnnotationScript

ModifyAnnotationScript(ModifyAnnotationScript) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.ModifyAnnotationScript

Copies the algorithm

ModifyTablesScript - Class in org.hkijena.jipipe.extensions.tables.algorithms

Algorithm that annotates all data with the same annotation

ModifyTablesScript(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.ModifyTablesScript

ModifyTablesScript(ModifyTablesScript) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.ModifyTablesScript

Copies the algorithm

MonochromeColorIcon - Class in org.hkijena.jipipe.ui.components

Icon that takes an existing image icon and uses it as mask for recoloring

MonochromeColorIcon(ImageIcon) - Constructor for class org.hkijena.jipipe.ui.components.MonochromeColorIcon

Creates a white icon

MonochromeColorIcon(ImageIcon, Color) - Constructor for class org.hkijena.jipipe.ui.components.MonochromeColorIcon

MontageToStackAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions

Implementation of MontageMaker

MontageToStackAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.MontageToStackAlgorithm

MontageToStackAlgorithm(MontageToStackAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.MontageToStackAlgorithm

months - Static variable in class org.hkijena.jipipe.ui.ijupdater.SingleFileSelectionPanel

Morphology2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology

Wrapper around ImageProcessor

Morphology2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.Morphology2DAlgorithm

Instantiates a new node type.

Morphology2DAlgorithm(Morphology2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.Morphology2DAlgorithm

Instantiates a new node type.

MorphologyBinary2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology

Wrapper around ImageProcessor

MorphologyBinary2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyBinary2DAlgorithm

Instantiates a new node type.

MorphologyBinary2DAlgorithm(MorphologyBinary2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyBinary2DAlgorithm

Instantiates a new node type.

MorphologyBinary2DAlgorithm.Operation - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology

Available transformation functions

MorphologyFillHoles2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology

Wrapper around ImageProcessor

MorphologyFillHoles2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyFillHoles2DAlgorithm

Instantiates a new node type.

MorphologyFillHoles2DAlgorithm(MorphologyFillHoles2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyFillHoles2DAlgorithm

Instantiates a new node type.

MorphologyInternalGradient2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology

Wrapper around ImageProcessor

MorphologyInternalGradient2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyInternalGradient2DAlgorithm

Instantiates a new node type.

MorphologyInternalGradient2DAlgorithm(MorphologyInternalGradient2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyInternalGradient2DAlgorithm

Instantiates a new node type.

MorphologyOutline2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology

Wrapper around ImageProcessor

MorphologyOutline2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyOutline2DAlgorithm

Instantiates a new node type.

MorphologyOutline2DAlgorithm(MorphologyOutline2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyOutline2DAlgorithm

Instantiates a new node type.

MorphologySkeletonize2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology

Wrapper around ImageProcessor

MorphologySkeletonize2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologySkeletonize2DAlgorithm

Instantiates a new node type.

MorphologySkeletonize2DAlgorithm(MorphologySkeletonize2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologySkeletonize2DAlgorithm

Instantiates a new node type.

mouseClicked(MouseEvent) - Method in class org.hkijena.jipipe.ui.components.JIPipeIconPickerDialog

mouseClicked(MouseEvent) - Method in class org.hkijena.jipipe.ui.components.MessagePanel.Message

mouseClicked(MouseEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

mouseClicked(MouseEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorMinimap

mouseClicked(MouseEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

mouseDragged(MouseEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

mouseDragged(MouseEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorMinimap

mouseDragged(MouseEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

mouseEntered(MouseEvent) - Method in class org.hkijena.jipipe.ui.components.JIPipeIconPickerDialog

mouseEntered(MouseEvent) - Method in class org.hkijena.jipipe.ui.components.MessagePanel.Message

mouseEntered(MouseEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

mouseEntered(MouseEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorMinimap

mouseEntered(MouseEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

mouseExited(MouseEvent) - Method in class org.hkijena.jipipe.ui.components.JIPipeIconPickerDialog

mouseExited(MouseEvent) - Method in class org.hkijena.jipipe.ui.components.MessagePanel.Message

mouseExited(MouseEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

mouseExited(MouseEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorMinimap

mouseExited(MouseEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

mouseMoved(MouseEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

mouseMoved(MouseEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorMinimap

mouseMoved(MouseEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

mousePressed(MouseEvent) - Method in class org.hkijena.jipipe.ui.components.JIPipeIconPickerDialog

mousePressed(MouseEvent) - Method in class org.hkijena.jipipe.ui.components.MessagePanel.Message

mousePressed(MouseEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

mousePressed(MouseEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorMinimap

mousePressed(MouseEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

mouseReleased(MouseEvent) - Method in class org.hkijena.jipipe.ui.components.JIPipeIconPickerDialog

mouseReleased(MouseEvent) - Method in class org.hkijena.jipipe.ui.components.MessagePanel.Message

mouseReleased(MouseEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

mouseReleased(MouseEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorMinimap

mouseReleased(MouseEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

mouseWheelMoved(MouseWheelEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

moveDown(String, JIPipeSlotType) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

Moves the specified slot down in its order

moveDown(String, JIPipeSlotType) - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration

MoveNodesGraphHistorySnapshot - Class in org.hkijena.jipipe.api.history

MoveNodesGraphHistorySnapshot(JIPipeGraph, String) - Constructor for class org.hkijena.jipipe.api.history.MoveNodesGraphHistorySnapshot

Creates a snapshot of all node locations

moveSeriesDown(JIPipePlotSeriesBuilder) - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotBuilderUI

Moves the series down in order

moveSeriesUp(JIPipePlotSeriesBuilder) - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotBuilderUI

Moves the series up in order

moveToGridLocation(Point, boolean, boolean) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI

Moves the node to a grid location

moveToMajor(int, boolean) - Method in class org.hkijena.jipipe.ui.grapheditor.connections.NonCollidingRectangularLineDrawer

moveToMajor(int) - Method in class org.hkijena.jipipe.ui.grapheditor.connections.RectangularLineDrawer

moveToMinor(int, boolean) - Method in class org.hkijena.jipipe.ui.grapheditor.connections.NonCollidingRectangularLineDrawer

moveToMinor(int) - Method in class org.hkijena.jipipe.ui.grapheditor.connections.RectangularLineDrawer

moveToNextGridPoint(Point, boolean, boolean) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI

Moves the node to the next grid location, given a real location

moveToStoredGridLocation(boolean) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI

Moves the UI back to the stored grid location

moveUp(String, JIPipeSlotType) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

Moves the specified slot up in its order

moveUp(String, JIPipeSlotType) - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration

MSTGraphAutoLayoutMethod - Class in org.hkijena.jipipe.ui.grapheditor.layout

MST-based auto-layout method

MSTGraphAutoLayoutMethod() - Constructor for class org.hkijena.jipipe.ui.grapheditor.layout.MSTGraphAutoLayoutMethod

MSTGraphAutoLayoutMethod.Edge - Class in org.hkijena.jipipe.ui.grapheditor.layout

MSTGraphAutoLayoutMethod.Node - Class in org.hkijena.jipipe.ui.grapheditor.layout

MultiDataSlotTableColumnRenderer(JIPipeMergedDataSlotTable) - Constructor for class org.hkijena.jipipe.ui.cache.JIPipeCacheMultiDataSlotTableUI.MultiDataSlotTableColumnRenderer

Creates a new instance

MultiFileSelectionPanel - Class in org.hkijena.jipipe.ui.ijupdater

Opened when selecting one file

MultiFileSelectionPanel(JIPipeWorkbench, ManagerUI, Set<FileObject>) - Constructor for class org.hkijena.jipipe.ui.ijupdater.MultiFileSelectionPanel

MultiParameterAlgorithm - Class in org.hkijena.jipipe.extensions.multiparameters.algorithms

An algorithm that takes multi parameters

MultiParameterAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterAlgorithm

Creates a new instance

MultiParameterAlgorithm(MultiParameterAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterAlgorithm

Copies the algorithm

MultiParameterAlgorithmsExtension - Class in org.hkijena.jipipe.extensions.multiparameters

Extension that provides capabilities to run multiple parameters

MultiParameterAlgorithmsExtension() - Constructor for class org.hkijena.jipipe.extensions.multiparameters.MultiParameterAlgorithmsExtension

MultiParameterAlgorithmSlotConfiguration - Class in org.hkijena.jipipe.extensions.multiparameters.algorithms

Slot configuration for MultiParameterAlgorithm

MultiParameterAlgorithmSlotConfiguration() - Constructor for class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterAlgorithmSlotConfiguration

Creates a new instance

MultiParameterNodeInfo - Class in org.hkijena.jipipe.extensions.multiparameters.algorithms

Info for MultiParameterAlgorithm

MultiParameterNodeInfo() - Constructor for class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterNodeInfo

Creates a new instance

MultiParametersExtension - Class in org.hkijena.jipipe.extensions.multiparameters

Extension that provides capabilities to run multiple parameters

MultiParametersExtension() - Constructor for class org.hkijena.jipipe.extensions.multiparameters.MultiParametersExtension

MultiSelectionModel - Class in org.hkijena.jipipe.ui.components

Selection model for multiple selections

MultiSelectionModel() - Constructor for class org.hkijena.jipipe.ui.components.MultiSelectionModel

MultiTemplateMatchingAlgorithm - Class in org.hkijena.jipipe.extensions.ijmultitemplatematching

MultiTemplateMatchingAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm

MultiTemplateMatchingAlgorithm(MultiTemplateMatchingAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm

MultiTemplateMatchingExtension - Class in org.hkijena.jipipe.extensions.ijmultitemplatematching

Extension that adds ImageJ2 algorithms

MultiTemplateMatchingExtension() - Constructor for class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingExtension

MutableTableColumn - Interface in org.hkijena.jipipe.extensions.tables

A TableColumn that carries data and is therefore mutable

N

name() - Method in class org.hkijena.jipipe.api.JIPipeDefaultDocumentation

nameEquals(JIPipeAnnotation) - Method in class org.hkijena.jipipe.api.data.JIPipeAnnotation

Returns true if the names are equal

nameEquals(String) - Method in class org.hkijena.jipipe.api.data.JIPipeAnnotation

Returns true if the name equals the string

nameEquals(JIPipeAnnotation, JIPipeAnnotation) - Static method in class org.hkijena.jipipe.api.data.JIPipeAnnotation

Returns true if both have the same name.

NavigationRenderer() - Constructor for class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI.NavigationRenderer

Creates a new instance

newInstance(Object...) - Method in class org.hkijena.jipipe.api.data.JIPipeDataInfo

Creates a new instance

newInstance() - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

newInstance() - Method in class org.hkijena.jipipe.api.nodes.JIPipeEmptyNodeInfo

newInstance(String) - Static method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Utility function to create an algorithm instance from its id

newInstance() - Method in class org.hkijena.jipipe.api.nodes.JIPipeJavaNodeInfo

newInstance() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeInfo

Creates a new node type instance

newInstance() - Method in class org.hkijena.jipipe.api.parameters.JIPipeDefaultParameterTypeInfo

newInstance() - Method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterTypeInfo

Creates a new non-null instance of the parameter type

newInstance() - Method in class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterNodeInfo

newInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.BooleanParameterTypeInfo

newInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.BooleanPrimitiveParameterTypeInfo

newInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.ByteParameterTypeInfo

newInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.BytePrimitiveParameterTypeInfo

newInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DoubleParameterTypeInfo

newInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DoublePrimitiveParameterTypeInfo

newInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.EnumParameterTypeInfo

newInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.FloatParameterTypeInfo

newInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.FloatPrimitiveParameterTypeInfo

newInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.IntParameterTypeInfo

newInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.IntPrimitiveParameterTypeInfo

newInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.LongParameterTypeInfo

newInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.LongPrimitiveParameterTypeInfo

newInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.ShortParameterTypeInfo

newInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.ShortPrimitiveParameterTypeInfo

newInstance(Class<?>, Object...) - Static method in class org.hkijena.jipipe.utils.ReflectionUtils

Creates a new class instance.

NewPlotMenuExtension - Class in org.hkijena.jipipe.extensions.plots

Adds an entry "New plot" to the JIPipe menu

NewPlotMenuExtension(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.extensions.plots.NewPlotMenuExtension

Creates a new instance

newProject(boolean) - Method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWindow

Creates a new project and asks the user if it should be opened in this or a new window

newProject() - Method in class org.hkijena.jipipe.ui.JIPipeProjectWindow

Creates a new project.

newProjectFromTemplate() - Method in class org.hkijena.jipipe.ui.JIPipeProjectWindow

Creates a new project from template

NewTableMenuExtension - Class in org.hkijena.jipipe.extensions.tables

Adds an entry "New table" to the JIPipe menu

NewTableMenuExtension(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.extensions.tables.NewTableMenuExtension

Creates a new instance

newTest() - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBench

Creates a new test

newText(String) - Method in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog

newText(String, SimpleAttributeSet) - Method in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog

newWindow(Context, JIPipeJsonExtension, boolean) - Static method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWindow

Opens a new window

newWindow(Context, JIPipeProject, boolean, boolean) - Static method in class org.hkijena.jipipe.ui.JIPipeProjectWindow

Creates a new window

NO_EMPTY_GROUP_HEADERS - Static variable in class org.hkijena.jipipe.ui.parameters.ParameterPanel

Flag for ParameterPanel.

NO_GROUP_HEADERS - Static variable in class org.hkijena.jipipe.ui.parameters.ParameterPanel

Flag for ParameterPanel.

Node(JIPipeParameterTree.Node, JIPipeParameterCollection) - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node

Creates a node

Node(JIPipeNodeUI) - Constructor for class org.hkijena.jipipe.ui.grapheditor.layout.MSTGraphAutoLayoutMethod.Node

NodeConnectedEvent - Class in org.hkijena.jipipe.api.events

Generated when a connection was made in JIPipeGraph

NodeConnectedEvent(JIPipeGraph, JIPipeDataSlot, JIPipeDataSlot) - Constructor for class org.hkijena.jipipe.api.events.NodeConnectedEvent

NodeDisconnectedEvent - Class in org.hkijena.jipipe.api.events

Generated when slots are disconnected

NodeDisconnectedEvent(JIPipeGraph, JIPipeDataSlot, JIPipeDataSlot) - Constructor for class org.hkijena.jipipe.api.events.NodeDisconnectedEvent

NodeGroup - Class in org.hkijena.jipipe.api.grouping

A sub-graph algorithm that can be defined by a user

NodeGroup(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.api.grouping.NodeGroup

Creates a new instance

NodeGroup(NodeGroup) - Constructor for class org.hkijena.jipipe.api.grouping.NodeGroup

Creates a copy

NodeGroup(JIPipeGraph, boolean) - Constructor for class org.hkijena.jipipe.api.grouping.NodeGroup

Initializes from an existing graph

NodeGroupContents - Class in org.hkijena.jipipe.api.grouping.parameters

NodeGroupContents() - Constructor for class org.hkijena.jipipe.api.grouping.parameters.NodeGroupContents

Creates a new empty instance

NodeGroupContents(NodeGroupContents) - Constructor for class org.hkijena.jipipe.api.grouping.parameters.NodeGroupContents

Makes a copy

NodeGroupContents.Deserializer - Class in org.hkijena.jipipe.api.grouping.parameters

NodeGroupContents.Serializer - Class in org.hkijena.jipipe.api.grouping.parameters

NodeGroupContentsParameterEditorUI - Class in org.hkijena.jipipe.api.grouping.parameters

Editor for NodeGroupContents

NodeGroupContentsParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.api.grouping.parameters.NodeGroupContentsParameterEditorUI

Creates new instance

NodeInfoRegisteredEvent - Class in org.hkijena.jipipe.api.events

Triggered when an algorithm is registered

NodeInfoRegisteredEvent(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.api.events.NodeInfoRegisteredEvent

NodeSelectedEvent(JIPipeNodeInfoPicker, JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.ui.components.JIPipeNodeInfoPicker.NodeSelectedEvent

NodeSlotsChangedEvent - Class in org.hkijena.jipipe.api.events

Triggered when an algorithm's slots change

NodeSlotsChangedEvent(JIPipeGraphNode) - Constructor for class org.hkijena.jipipe.api.events.NodeSlotsChangedEvent

NodeUIContextAction - Interface in org.hkijena.jipipe.ui.grapheditor.contextmenu

An action that is applied one or multiple algorithms

NonCollidingRectangularLineDrawer - Class in org.hkijena.jipipe.ui.grapheditor.connections

Encapsulates drawing rectangular lines

NonCollidingRectangularLineDrawer() - Constructor for class org.hkijena.jipipe.ui.grapheditor.connections.NonCollidingRectangularLineDrawer

NONE - Static variable in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree

No flags

NONE - Static variable in class org.hkijena.jipipe.ui.components.FormPanel

Flag that indicates no modifications, meaning (1) No documentation, and (2) no scrolling

normal - Variable in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog

normalizeTabRuns(int, int, int, int) - Method in class org.hkijena.jipipe.utils.CustomTabbedPaneUI.TabbedPaneLayout

nullToEmpty(String) - Static method in class org.hkijena.jipipe.utils.StringUtils

Returns an empty string if s is null otherwise returns s

NumberParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.primitives

Editor for a any numeric parameter

NumberParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.NumberParameterEditorUI

NumberParameterSettings - Annotation Type in org.hkijena.jipipe.extensions.parameters.primitives

Attached to the getter or setter of Number parameter to setup the GUI

NumberRangeParameterGenerator<T extends Number & Comparable<T>> - Class in org.hkijena.jipipe.extensions.parameters.generators

Generator that creates instances of Number.

NumberRangeParameterGenerator(JIPipeWorkbench, Class<? extends Number>) - Constructor for class org.hkijena.jipipe.extensions.parameters.generators.NumberRangeParameterGenerator

Creates a new instance

O

OccurrencesColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting

Converts each entry into a the number of occurrences within the column

OccurrencesColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.OccurrencesColumnOperation

OCEAN_BLACK - Static variable in class org.hkijena.jipipe.utils.ModernMetalTheme

OCEAN_DROP - Static variable in class org.hkijena.jipipe.utils.ModernMetalTheme

ok - Variable in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog

OMEColorMode - Enum in org.hkijena.jipipe.extensions.imagejdatatypes.parameters

Wrapper around Bioformats color modes

OMEExport(OMEImageData, Path, OMEExporterSettings) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.OMEImageData

Copy of the run method in Exporter that allows configuration via a parameter object

OMEExporterSettings - Class in org.hkijena.jipipe.extensions.imagejdatatypes.parameters

OMEExporterSettings() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMEExporterSettings

OMEExporterSettings(OMEExporterSettings) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMEExporterSettings

OMEImageData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes

Data that is a representation of all information saved in Bio-Formats

OMEImageData(Path) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.OMEImageData

OMEImageData(ImagePlus, ROIListData, OMEXMLMetadata) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.OMEImageData

OMEImageDataImageJAdapter - Class in org.hkijena.jipipe.extensions.imagejdatatypes.compat

Adapter between ImagePlus and OMEImageData

OMEImageDataImageJAdapter() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.compat.OMEImageDataImageJAdapter

OMEImageDataPreviewUI - Class in org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis

OMEImageDataPreviewUI(JTable) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageDataPreviewUI

Creates a new renderer

OMEImageDataSlotRowUI - Class in org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis

Result UI for ImagePlus data

OMEImageDataSlotRowUI(JIPipeProjectWorkbench, JIPipeDataSlot, JIPipeExportedDataTable.Row) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageDataSlotRowUI

OMEImageToImagePlusTypeConverter - Class in org.hkijena.jipipe.extensions.imagejdatatypes.algorithms

OMEImageToImagePlusTypeConverter() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.OMEImageToImagePlusTypeConverter

OmeImageToOMEXMLTypeConverter - Class in org.hkijena.jipipe.extensions.imagejdatatypes.algorithms

OmeImageToOMEXMLTypeConverter() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.OmeImageToOMEXMLTypeConverter

OMEImageToROITypeConverter - Class in org.hkijena.jipipe.extensions.imagejdatatypes.algorithms

OMEImageToROITypeConverter() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.OMEImageToROITypeConverter

OMETIFFCompression - Enum in org.hkijena.jipipe.extensions.imagejdatatypes.parameters

Available compression methods

onActionRequested(AlgorithmUIActionRequestedEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

Triggers when an JIPipeNodeUI requests an action.

onAlgorithmActionRequested(AlgorithmUIActionRequestedEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCompartmentUI

Listens to events of algorithms requesting some action

onAlgorithmConnected(NodeConnectedEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

Should be triggered when a connection is made

onAlgorithmEvent(AlgorithmEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

Triggered when something interesting happens in the graph and the UI should scroll to it

onAlgorithmFinderSuccess(AlgorithmFinderSuccessEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmFinderAlgorithmUI

Should trigger when a successful connection was made.

onAlgorithmFinderSuccess(AlgorithmFinderSuccessEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmFinderUI

Should trigger when a target slot was successfully found.

onAlgorithmGraphChanged(GraphChangedEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeDataSlotUI

Should be triggered when the slots are changed

onAlgorithmGraphChanged(GraphChangedEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

Should be triggered when the algorithm graph is changed.

onAlgorithmParametersChanged(ParameterChangedEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI

Should be triggered when an algorithm's name parameter is changed

onAlgorithmRegistryChanged(NodeInfoRegisteredEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

Should be triggered when new algorithms are registered.

onAlgorithmRemoved(GraphChangedEvent) - Method in class org.hkijena.jipipe.api.JIPipeProjectCache

Listens to changes in the algorithm graph.

onAlgorithmSelected(JIPipeNodeInfoPicker.NodeSelectedEvent) - Method in class org.hkijena.jipipe.extensions.parameters.editors.JIPipeNodeInfoRefParameterEditorUI

Triggered when a trait is selected

onAlgorithmSelected(AlgorithmSelectedEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

Should be triggered when an algorithm was selected

onAlgorithmSlotsChanged(NodeSlotsChangedEvent) - Method in class org.hkijena.jipipe.api.compat.SingleImageJAlgorithmRun

Triggered when the algorithm's slots are changed

onAlgorithmSlotsChanged(NodeSlotsChangedEvent) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Should be triggered when an JIPipeGraphNode's slots are changed.

onAlgorithmSlotsChanged(NodeSlotsChangedEvent) - Method in class org.hkijena.jipipe.ui.compat.RunSingleAlgorithmDialog

Triggered when algorithm slots are changed

onAlgorithmSlotsChanged(NodeSlotsChangedEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmFinderAlgorithmUI

Should trigger when the target algorithm slots are changed

onAlgorithmSlotsChanged(NodeSlotsChangedEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI

Should be triggered when the algorithm's slots are changed.

onAlgorithmSlotsChanged(NodeSlotsChangedEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.settings.JIPipeSlotEditorUI

Triggered when the algorithm slots are changed

onApplicationSettingsChanged(ParameterChangedEvent) - Method in class org.hkijena.jipipe.ui.components.RecentJsonExtensionsMenu

Triggered when the list should be changed

onApplicationSettingsChanged(ParameterChangedEvent) - Method in class org.hkijena.jipipe.ui.components.RecentProjectsMenu

Triggered when the list should be changed

onCacheUpdated(JIPipeProjectCache.ModifiedEvent) - Method in class org.hkijena.jipipe.ui.batchassistant.DataBatchAssistantUI

Triggered when the cache was updated

onCacheUpdated(JIPipeProjectCache.ModifiedEvent) - Method in class org.hkijena.jipipe.ui.cache.JIPipeAlgorithmCacheBrowserUI

Triggered when the cache was updated

onCacheUpdated(JIPipeProjectCache.ModifiedEvent) - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheBrowserUI

Triggered when the cache was updated

onCacheUpdated(JIPipeProjectCache.ModifiedEvent) - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheDataSlotTableUI

Triggered when the cache was updated

onCacheUpdated(JIPipeProjectCache.ModifiedEvent) - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheManagerUI

Triggered when the cache was updated

onCacheUpdated(JIPipeProjectCache.ModifiedEvent) - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheMultiDataSlotTableUI

Triggered when the cache was updated

onCacheUpdated(JIPipeProjectCache.ModifiedEvent) - Method in class org.hkijena.jipipe.ui.cache.JIPipeDataSlotCacheManagerUI

Triggered when the cache was updated

onCompartmentGraphChanged(GraphChangedEvent) - Method in class org.hkijena.jipipe.api.JIPipeProject

Triggered when the compartment graph is changed

onCompartmentRemoved(CompartmentRemovedEvent) - Method in class org.hkijena.jipipe.ui.JIPipeProjectWorkbench

Triggered when a compartment is deleted.

onContentAddedEvent(ExtensionContentAddedEvent) - Method in class org.hkijena.jipipe.ui.extensionbuilder.JIPipeJsonExtensionContentListUI

Triggered when content was added

onContentRemovedEvent(ExtensionContentRemovedEvent) - Method in class org.hkijena.jipipe.ui.extensionbuilder.JIPipeJsonExtensionContentListUI

Triggered when content was removed

onContentRemovedEvent(ExtensionContentRemovedEvent) - Method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWorkbench

Triggered when content was removed

onDatatypeRegistered(DatatypeRegisteredEvent) - Method in class org.hkijena.jipipe.api.registries.JIPipeNodeRegistry

Triggered when a datatype was registered.

onDefaultActionRequested(DefaultAlgorithmUIActionRequestedEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCompartmentUI

onDisconnected(NodeDisconnectedEvent) - Method in class org.hkijena.jipipe.ui.batchassistant.DataBatchAssistantUI

Triggered when an algorithm input is disconnected

onExtensionDiscovered(ExtensionDiscoveredEvent) - Method in class org.hkijena.jipipe.ui.components.SplashScreen

onExtensionRegistered(ExtensionRegisteredEvent) - Method in class org.hkijena.jipipe.extensions.jsonextensionloader.JsonExtensionLoaderExtension

Triggered when an extension is registered.

onExtensionRegistered(ExtensionRegisteredEvent) - Method in class org.hkijena.jipipe.ui.extensions.JIPipePluginManagerUIPanel

Triggered when an extension is registered

onExtensionRegistered(ExtensionRegisteredEvent) - Method in class org.hkijena.jipipe.ui.extensions.JIPipePluginValidityCheckerButton

Triggered when an extension is registered.

onExtensionRegistered(ExtensionRegisteredEvent) - Method in class org.hkijena.jipipe.ui.extensions.JIPipePluginValidityCheckerPanel

Triggered when a new extension is registered

onExtensionRegistered(ExtensionRegisteredEvent) - Method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWorkbench

Informs the user about registered extensions.

onExtensionRegistered(ExtensionRegisteredEvent) - Method in class org.hkijena.jipipe.ui.JIPipeProjectWorkbench

Informs the user about registered extensions.

onGraphCanvasUpdated(GraphCanvasUpdatedEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorMinimap

onGraphChanged(GraphChangedEvent) - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

Triggered when the wrapped graph changed

onGraphChanged(GraphChangedEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

Should be triggered when the algorithm graph is changed

onGraphParameterStructureChanged(ParameterStructureChangedEvent) - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

Triggered when the parameter structure of an algorithm is changed Updates the list of available parameters

onGraphStructureChanged(GraphChangedEvent) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParametersUI

Triggered when the algorithm graph was changed

onNavigatorNavigate(SearchBox.SelectedEvent<Object>) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

Triggered when the user selected something in the navigator

onNodeParameterChanged(ParameterChangedEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeHorizontalDataSlotUI

onNodeParameterChanged(ParameterChangedEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeVerticalDataSlotUI

onOpenAlgorithmSettings(AlgorithmSelectedEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

Should be triggered when an JIPipeNodeUI requests that the algorithm settings should be opened

onOpenCompartment(DefaultAlgorithmUIActionRequestedEvent) - Method in class org.hkijena.jipipe.ui.compartments.JIPipeCompartmentGraphUI

Should be triggered when a user double-clicks a graph node to open it in the graph editor

onOperationFinished(RunUIWorkerFinishedEvent) - Method in class org.hkijena.jipipe.ui.ijupdater.JIPipeImageJPluginManager

onOperationInterrupted(RunUIWorkerInterruptedEvent) - Method in class org.hkijena.jipipe.ui.ijupdater.JIPipeImageJPluginManager

onParameterChanged(ParameterChangedEvent) - Method in class org.hkijena.jipipe.extensions.parameters.predicates.StringOrDoublePredicateParameterEditorUI

onParameterChanged(ParameterChangedEvent) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.StringOrDoubleParameterEditorUI

onParameterChanged(ParameterChangedEvent) - Method in class org.hkijena.jipipe.ui.extensionbuilder.JIPipeJsonExtensionContentListUI

Triggered when a name was changed

onParameterChanged(ParameterChangedEvent) - Method in class org.hkijena.jipipe.ui.parameters.JIPipeParameterEditorUI

Listens for changes in parameters

onParameterChanged(ParameterChangedEvent) - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotAvailableDataManagerUI

Triggered when a plot builder parameter is changed

onParameterChanged(ParameterChangedEvent) - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotBuilderUI

Triggered when a parameter was changed

onParameterChangedEvent(ParameterChangedEvent) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree

Triggered when a parameter value was changed.

onParameterReferenceChanged(ParameterReferencesChangedEvent) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParametersUI

Triggered when the references were changed

onParameterReferencesChanged(ParameterReferencesChangedEvent) - Method in class org.hkijena.jipipe.api.grouping.NodeGroup

onParameterReferencesChanged(ParameterReferencesChangedEvent) - Method in class org.hkijena.jipipe.ui.settings.JIPipeProjectInfoParameters

onParametersChanged(ParameterChangedEvent) - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotSeriesBuilder

Triggered when the plot builder's parameters are changed

onParametersChanged(ParameterChangedEvent) - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotSeriesListEditorUI

Triggered when the plot builder's parameters are changed

onParameterStructureChanged(ParameterStructureChangedEvent) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParametersUI

Triggered when the parameter structure was changed

onParameterStructureChanged(ParameterStructureChangedEvent) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Should be triggered when an JIPipeGraphNode's parameter structure is changed.

onParameterStructureChanged(ParameterStructureChangedEvent) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Triggered when the parameter structure of this algorithm was changed

onParameterStructureChanged(ParameterStructureChangedEvent) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree

Triggered when a source informs that the parameter structure was changed.

onParameterStructureChanged(ParameterStructureChangedEvent) - Method in class org.hkijena.jipipe.extensions.multiparameters.datasources.ParametersDataTableDefinition

onParameterStructureChanged(ParameterStructureChangedEvent) - Method in class org.hkijena.jipipe.ui.parameters.ParameterPanel

Triggered when the parameter structure was changed

onRecentProjectsChanged(ParameterChangedEvent) - Method in class org.hkijena.jipipe.ui.JIPipeInfoUI

onRecentProjectsChanged(ParameterChangedEvent) - Method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionInfoUI

onRecentProjectsChanged(ParameterChangedEvent) - Method in class org.hkijena.jipipe.ui.JIPipeProjectInfoUI

onReferencesChanged(ParameterReferencesChangedEvent) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameters

Triggered when some parameters were changed down the line

onRunFinished(RunUIWorkerFinishedEvent) - Method in class org.hkijena.jipipe.ui.running.JIPipeRunSettingsUI

Triggered when the run is finished

onRunInterrupted(RunUIWorkerInterruptedEvent) - Method in class org.hkijena.jipipe.ui.running.JIPipeRunSettingsUI

Triggered when the run is interrupted

onSelectionChanged(AlgorithmSelectionChangedEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

onSettingChanged(ParameterChangedEvent) - Method in class org.hkijena.jipipe.api.registries.JIPipeSettingsRegistry

Triggered when a setting was changed

onSlotConfigurationChanged(SlotsChangedEvent) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Should be triggered when a slot is added to the slot configuration

onSlotConfigurationParameterChanged(ParameterChangedEvent) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Triggered when a parameter is changed within the slot configuration.

onSlotConnected(NodeConnectedEvent) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Called by an JIPipeGraph when a slot was connected.

onSlotDisconnected(NodeDisconnectedEvent) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Called by the JIPipeGraph to trigger slot inheritance updates when a slot is disconnected

onSlotNameChanged(ParameterChangedEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeDataSlotUI

Triggered when the custom name of the slot definition is changed

onSlotNameChanged(ParameterChangedEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.settings.JIPipeSlotEditorUI

Triggered when the custom name of the slot definition is changed

onSlotsChanged(NodeSlotsChangedEvent) - Method in class org.hkijena.jipipe.ui.batchassistant.DataBatchAssistantUI

Triggered when the slots were changed

onSlotsUpdated(NodeSlotsChangedEvent) - Method in class org.hkijena.jipipe.extensions.parameters.collections.SlotMapParameterCollection

Triggered when algorithm slots are changed

onSourceParameterChanged(ParameterChangedEvent) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccess

onTableStructureChangedEvent(TableModelEvent) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTableEditorUI

onTraitSelected(JIPipeDataTypePicker.SelectedDataTypesChangedEvent) - Method in class org.hkijena.jipipe.extensions.parameters.editors.JIPipeDataInfoRefParameterEditorUI

Triggered when a trait is selected

onWindowClosed(WindowClosedEvent) - Method in class org.hkijena.jipipe.JIPipeLauncher.WindowWatcher

onWorkerFinished(RunUIWorkerFinishedEvent) - Method in class org.hkijena.jipipe.ui.cache.JIPipeAlgorithmCacheBrowserUI

onWorkerFinished(RunUIWorkerFinishedEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.settings.JIPipeTestBenchSetupUI

Triggered when a worker is finished

onWorkerFinished(RunUIWorkerFinishedEvent) - Method in class org.hkijena.jipipe.ui.running.JIPipeRunExecuterUI

Triggered when a scheduled worker is finished

onWorkerFinished(RunUIWorkerFinishedEvent) - Method in class org.hkijena.jipipe.ui.running.JIPipeRunnerQueue

Triggered when a worker is finished

onWorkerFinished(RunUIWorkerFinishedEvent) - Method in class org.hkijena.jipipe.ui.running.JIPipeRunnerQueueUI

Triggered when a worker is finished

onWorkerFinished(RunUIWorkerFinishedEvent) - Method in class org.hkijena.jipipe.ui.testbench.JIPipeTestBenchUI

Triggered when the quick run finished calculating

onWorkerInterrupted(RunUIWorkerInterruptedEvent) - Method in class org.hkijena.jipipe.ui.cache.JIPipeAlgorithmCacheBrowserUI

onWorkerInterrupted(RunUIWorkerInterruptedEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.settings.JIPipeTestBenchSetupUI

Triggered when a worker is interrupted

onWorkerInterrupted(RunUIWorkerFinishedEvent) - Method in class org.hkijena.jipipe.ui.running.JIPipeRunExecuterUI

Triggered when a schedules worker is interrupted

onWorkerInterrupted(RunUIWorkerInterruptedEvent) - Method in class org.hkijena.jipipe.ui.running.JIPipeRunnerQueue

Triggered when a worker is interrupted

onWorkerInterrupted(RunUIWorkerInterruptedEvent) - Method in class org.hkijena.jipipe.ui.running.JIPipeRunnerQueueUI

Triggered when a worker is interrupted

onWorkerInterrupted(RunUIWorkerInterruptedEvent) - Method in class org.hkijena.jipipe.ui.testbench.JIPipeTestBenchUI

Triggered when the quick run finished calculating

onWorkerProgress(RunUIWorkerProgressEvent) - Method in class org.hkijena.jipipe.ui.running.JIPipeRunExecuterUI

Triggered when a worker reports progress

onWorkerProgress(RunUIWorkerProgressEvent) - Method in class org.hkijena.jipipe.ui.running.JIPipeRunnerQueue

Triggered when a worker reports progress

onWorkerProgress(RunUIWorkerProgressEvent) - Method in class org.hkijena.jipipe.ui.running.JIPipeRunnerQueueUI

Triggered when a worker reports progress

onWorkerStarted(RunUIWorkerStartedEvent) - Method in class org.hkijena.jipipe.ui.running.JIPipeRunnerQueueUI

Triggered when a worker is started

onZoomChanged(ZoomChangedEvent) - Method in class org.hkijena.jipipe.ui.components.ZoomFlatIconButton

onZoomChanged(ZoomChangedEvent) - Method in class org.hkijena.jipipe.ui.components.ZoomLabel

OpenCLKernelScript - Class in org.hkijena.jipipe.extensions.clij2.parameters

A OpenCL kernel script

OpenCLKernelScript() - Constructor for class org.hkijena.jipipe.extensions.clij2.parameters.OpenCLKernelScript

Creates a new instance

OpenCLKernelScript(OpenCLKernelScript) - Constructor for class org.hkijena.jipipe.extensions.clij2.parameters.OpenCLKernelScript

Makes a copy

openCompartmentGraph(JIPipeProjectCompartment, boolean) - Method in class org.hkijena.jipipe.ui.JIPipeProjectWorkbench

Opens the graph editor for specified compartment

openContextMenu(Point) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

Opens the context menu at the location.

openDirectories(Component, String, String) - Static method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings

Lets the user choose multiple directories

openDirectory(Component, String, String) - Static method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings

Lets the user choose a directory

openErrorDialog(Component, Exception) - Static method in class org.hkijena.jipipe.utils.UIUtils

Opens a dialog showing an exception

openFile(Component, String, String, FileNameExtensionFilter...) - Static method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings

Lets the user choose a file

openFileInNative(Path) - Static method in class org.hkijena.jipipe.utils.UIUtils

Opens a website with given URL

openFiles(Component, String, String) - Static method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings

Lets the user choose multiple files

openGroupNodeGraph(JIPipeWorkbench, NodeGroup, boolean) - Static method in class org.hkijena.jipipe.ui.grouping.JIPipeNodeGroupUI

Opens the graph editor for specified compartment

OpenImageJTool - Class in org.hkijena.jipipe.extensions.tools

OpenImageJTool(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.extensions.tools.OpenImageJTool

Creates a new instance

openInNewTab(JIPipeWorkbench, String) - Static method in class org.hkijena.jipipe.ui.texteditor.JIPipeTextEditor

openPath(Component, String, String) - Static method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings

Lets the user choose a file or directory

openPaths(Component, String, String) - Static method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings

Lets the user choose multiple files or directories

openProject(Path) - Method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWindow

Opens a project from a file Asks the user if it should be opened in this or a new window

openProject() - Method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWindow

Displays a file chooser where the user can open a project.

openProject(Path) - Method in class org.hkijena.jipipe.ui.JIPipeProjectWindow

Opens a project from a file or folder Asks the user if it should replace the currently displayed project

openProject() - Method in class org.hkijena.jipipe.ui.JIPipeProjectWindow

Opens a file chooser where the user can select a project file

openProjectAndOutput() - Method in class org.hkijena.jipipe.ui.JIPipeProjectWindow

Opens a file chooser where the user can select a result folder

openROIs(IMetadata, ImagePlus[]) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ROIHandler

Look for ROIs in the given OMEXMLMetadata; if any are present, apply them to the given images and display them in the ROI manager.

openROIs(IMetadata, ImagePlus[], boolean) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ROIHandler

Opens the rois and converts them into ImageJ Rois.

openValidityReportDialog(Component, JIPipeValidityReport, boolean) - Static method in class org.hkijena.jipipe.utils.UIUtils

Opens a dialog showing a validity report

openWebsite(String) - Static method in class org.hkijena.jipipe.utils.UIUtils

Opens a website with given URL

OptionalBooleanParameter - Class in org.hkijena.jipipe.extensions.parameters.primitives

Optional Boolean

OptionalBooleanParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.OptionalBooleanParameter

Creates a new instance

OptionalBooleanParameter(OptionalBooleanParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.OptionalBooleanParameter

Creates a copy

OptionalByteParameter - Class in org.hkijena.jipipe.extensions.parameters.primitives

Optional Byte

OptionalByteParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.OptionalByteParameter

Creates a new instance

OptionalByteParameter(OptionalByteParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.OptionalByteParameter

Creates a copy

OptionalColorMapParameter - Class in org.hkijena.jipipe.extensions.parameters.colors

Optional ColorMap

OptionalColorMapParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.colors.OptionalColorMapParameter

Creates a new instance

OptionalColorMapParameter(OptionalColorMapParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.colors.OptionalColorMapParameter

Creates a copy

OptionalColorParameter - Class in org.hkijena.jipipe.extensions.parameters.colors

Optional Color

OptionalColorParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.colors.OptionalColorParameter

Creates a new instance

OptionalColorParameter(OptionalColorParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.colors.OptionalColorParameter

Creates a copy

OptionalDoubleParameter - Class in org.hkijena.jipipe.extensions.parameters.primitives

Optional Double

OptionalDoubleParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.OptionalDoubleParameter

Creates a new instance

OptionalDoubleParameter(OptionalDoubleParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.OptionalDoubleParameter

Creates a copy

OptionalFloatParameter - Class in org.hkijena.jipipe.extensions.parameters.primitives

Optional Float

OptionalFloatParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.OptionalFloatParameter

Creates a new instance

OptionalFloatParameter(OptionalFloatParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.OptionalFloatParameter

Creates a copy

OptionalIntegerParameter - Class in org.hkijena.jipipe.extensions.parameters.primitives

Optional Integer

OptionalIntegerParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.OptionalIntegerParameter

Creates a new instance

OptionalIntegerParameter(OptionalIntegerParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.OptionalIntegerParameter

Creates a copy

OptionalIntModificationParameter - Class in org.hkijena.jipipe.extensions.parameters.roi

An optional IntModificationParameter

OptionalIntModificationParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.roi.OptionalIntModificationParameter

OptionalIntModificationParameter(OptionalIntModificationParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.roi.OptionalIntModificationParameter

OptionalLongParameter - Class in org.hkijena.jipipe.extensions.parameters.primitives

Optional Long

OptionalLongParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.OptionalLongParameter

Creates a new instance

OptionalLongParameter(OptionalLongParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.OptionalLongParameter

Creates a copy

OptionalParameter<T> - Class in org.hkijena.jipipe.extensions.parameters.optional

A parameter that is optional

OptionalParameter(Class<T>) - Constructor for class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameter

OptionalParameter(OptionalParameter<T>) - Constructor for class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameter

Produces a shallow copy You have to implement deep content copying yourself

OptionalParameter.Deserializer<T> - Class in org.hkijena.jipipe.extensions.parameters.optional

Deserializes the parameter

OptionalParameter.Serializer - Class in org.hkijena.jipipe.extensions.parameters.optional

Serializes the parameter

OptionalParameterContentAccess<T> - Class in org.hkijena.jipipe.extensions.parameters.optional

Parameter access for the key entry in Pair

OptionalParameterContentAccess(JIPipeParameterAccess, OptionalParameter<T>) - Constructor for class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameterContentAccess

Creates a new instance

OptionalParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.optional

Generic parameter for OptionalParameter

OptionalParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameterEditorUI

Creates new instance

OptionalPathParameter - Class in org.hkijena.jipipe.extensions.parameters.primitives

Optional Path

OptionalPathParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.OptionalPathParameter

Creates a new instance

OptionalPathParameter(OptionalPathParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.OptionalPathParameter

Creates a copy

OptionalShortParameter - Class in org.hkijena.jipipe.extensions.parameters.primitives

Optional Short

OptionalShortParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.OptionalShortParameter

Creates a new instance

OptionalShortParameter(OptionalShortParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.OptionalShortParameter

Creates a copy

OptionalStringParameter - Class in org.hkijena.jipipe.extensions.parameters.primitives

Optional String

OptionalStringParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.OptionalStringParameter

Creates a new instance

OptionalStringParameter(OptionalStringParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.OptionalStringParameter

Creates a copy

OPTIONS - Static variable in class org.hkijena.jipipe.ui.components.MarkdownReader

orElse(String, String) - Static method in class org.hkijena.jipipe.utils.StringUtils

Returns the string if its not null or empty or the alternative

org.hkijena.jipipe - package org.hkijena.jipipe

org.hkijena.jipipe.api - package org.hkijena.jipipe.api

org.hkijena.jipipe.api.compartments - package org.hkijena.jipipe.api.compartments

org.hkijena.jipipe.api.compartments.algorithms - package org.hkijena.jipipe.api.compartments.algorithms

org.hkijena.jipipe.api.compartments.datatypes - package org.hkijena.jipipe.api.compartments.datatypes

org.hkijena.jipipe.api.compat - package org.hkijena.jipipe.api.compat

org.hkijena.jipipe.api.data - package org.hkijena.jipipe.api.data

org.hkijena.jipipe.api.events - package org.hkijena.jipipe.api.events

org.hkijena.jipipe.api.exceptions - package org.hkijena.jipipe.api.exceptions

org.hkijena.jipipe.api.grouping - package org.hkijena.jipipe.api.grouping

org.hkijena.jipipe.api.grouping.events - package org.hkijena.jipipe.api.grouping.events

org.hkijena.jipipe.api.grouping.parameters - package org.hkijena.jipipe.api.grouping.parameters

org.hkijena.jipipe.api.history - package org.hkijena.jipipe.api.history

org.hkijena.jipipe.api.nodes - package org.hkijena.jipipe.api.nodes

org.hkijena.jipipe.api.nodes.categories - package org.hkijena.jipipe.api.nodes.categories

org.hkijena.jipipe.api.parameters - package org.hkijena.jipipe.api.parameters

org.hkijena.jipipe.api.registries - package org.hkijena.jipipe.api.registries

org.hkijena.jipipe.api.testbench - package org.hkijena.jipipe.api.testbench

org.hkijena.jipipe.extensions - package org.hkijena.jipipe.extensions

org.hkijena.jipipe.extensions.annotation - package org.hkijena.jipipe.extensions.annotation

org.hkijena.jipipe.extensions.annotation.algorithms - package org.hkijena.jipipe.extensions.annotation.algorithms

org.hkijena.jipipe.extensions.annotation.datasources - package org.hkijena.jipipe.extensions.annotation.datasources

org.hkijena.jipipe.extensions.clij2 - package org.hkijena.jipipe.extensions.clij2

org.hkijena.jipipe.extensions.clij2.algorithms - package org.hkijena.jipipe.extensions.clij2.algorithms

org.hkijena.jipipe.extensions.clij2.datatypes - package org.hkijena.jipipe.extensions.clij2.datatypes

org.hkijena.jipipe.extensions.clij2.parameters - package org.hkijena.jipipe.extensions.clij2.parameters

org.hkijena.jipipe.extensions.clij2.ui - package org.hkijena.jipipe.extensions.clij2.ui

org.hkijena.jipipe.extensions.core - package org.hkijena.jipipe.extensions.core

org.hkijena.jipipe.extensions.filesystem - package org.hkijena.jipipe.extensions.filesystem

org.hkijena.jipipe.extensions.filesystem.algorithms - package org.hkijena.jipipe.extensions.filesystem.algorithms

org.hkijena.jipipe.extensions.filesystem.compat - package org.hkijena.jipipe.extensions.filesystem.compat

org.hkijena.jipipe.extensions.filesystem.datasources - package org.hkijena.jipipe.extensions.filesystem.datasources

org.hkijena.jipipe.extensions.filesystem.dataypes - package org.hkijena.jipipe.extensions.filesystem.dataypes

org.hkijena.jipipe.extensions.filesystem.resultanalysis - package org.hkijena.jipipe.extensions.filesystem.resultanalysis

org.hkijena.jipipe.extensions.ijmultitemplatematching - package org.hkijena.jipipe.extensions.ijmultitemplatematching

org.hkijena.jipipe.extensions.imagejalgorithms - package org.hkijena.jipipe.extensions.imagejalgorithms

org.hkijena.jipipe.extensions.imagejalgorithms.ij1 - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1

org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze

org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background

org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary

org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur

org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color

org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast

org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convolve - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convolve

org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions

org.hkijena.jipipe.extensions.imagejalgorithms.ij1.edge - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1.edge

org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features

org.hkijena.jipipe.extensions.imagejalgorithms.ij1.fft - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1.fft

org.hkijena.jipipe.extensions.imagejalgorithms.ij1.generate - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1.generate

org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io

org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut

org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math

org.hkijena.jipipe.extensions.imagejalgorithms.ij1.misc - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1.misc

org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology

org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise

org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

org.hkijena.jipipe.extensions.imagejalgorithms.ij1.sharpen - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1.sharpen

org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics

org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold

org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform

org.hkijena.jipipe.extensions.imagejalgorithms.utils - package org.hkijena.jipipe.extensions.imagejalgorithms.utils

org.hkijena.jipipe.extensions.imagejdatatypes - package org.hkijena.jipipe.extensions.imagejdatatypes

org.hkijena.jipipe.extensions.imagejdatatypes.algorithms - package org.hkijena.jipipe.extensions.imagejdatatypes.algorithms

org.hkijena.jipipe.extensions.imagejdatatypes.compat - package org.hkijena.jipipe.extensions.imagejdatatypes.compat

org.hkijena.jipipe.extensions.imagejdatatypes.datasources - package org.hkijena.jipipe.extensions.imagejdatatypes.datasources

org.hkijena.jipipe.extensions.imagejdatatypes.datatypes - package org.hkijena.jipipe.extensions.imagejdatatypes.datatypes

org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.color - package org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.color

org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2 - package org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2

org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.color - package org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.color

org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale - package org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale

org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3 - package org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3

org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.color - package org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.color

org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale - package org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale

org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4 - package org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4

org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.color - package org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.color

org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale - package org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale

org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5 - package org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5

org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.color - package org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.color

org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale - package org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale

org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft - package org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft

org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale - package org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale

org.hkijena.jipipe.extensions.imagejdatatypes.parameters - package org.hkijena.jipipe.extensions.imagejdatatypes.parameters

org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis - package org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis

org.hkijena.jipipe.extensions.imagejdatatypes.util - package org.hkijena.jipipe.extensions.imagejdatatypes.util

org.hkijena.jipipe.extensions.imagejdatatypes.util.measure - package org.hkijena.jipipe.extensions.imagejdatatypes.util.measure

org.hkijena.jipipe.extensions.jsonextensionloader - package org.hkijena.jipipe.extensions.jsonextensionloader

org.hkijena.jipipe.extensions.multiparameters - package org.hkijena.jipipe.extensions.multiparameters

org.hkijena.jipipe.extensions.multiparameters.algorithms - package org.hkijena.jipipe.extensions.multiparameters.algorithms

org.hkijena.jipipe.extensions.multiparameters.datasources - package org.hkijena.jipipe.extensions.multiparameters.datasources

org.hkijena.jipipe.extensions.multiparameters.datatypes - package org.hkijena.jipipe.extensions.multiparameters.datatypes

org.hkijena.jipipe.extensions.parameters - package org.hkijena.jipipe.extensions.parameters

org.hkijena.jipipe.extensions.parameters.collections - package org.hkijena.jipipe.extensions.parameters.collections

org.hkijena.jipipe.extensions.parameters.colors - package org.hkijena.jipipe.extensions.parameters.colors

org.hkijena.jipipe.extensions.parameters.editors - package org.hkijena.jipipe.extensions.parameters.editors

org.hkijena.jipipe.extensions.parameters.enums - package org.hkijena.jipipe.extensions.parameters.enums

org.hkijena.jipipe.extensions.parameters.functions - package org.hkijena.jipipe.extensions.parameters.functions

org.hkijena.jipipe.extensions.parameters.generators - package org.hkijena.jipipe.extensions.parameters.generators

org.hkijena.jipipe.extensions.parameters.matrix - package org.hkijena.jipipe.extensions.parameters.matrix

org.hkijena.jipipe.extensions.parameters.optional - package org.hkijena.jipipe.extensions.parameters.optional

org.hkijena.jipipe.extensions.parameters.pairs - package org.hkijena.jipipe.extensions.parameters.pairs

org.hkijena.jipipe.extensions.parameters.patterns - package org.hkijena.jipipe.extensions.parameters.patterns

org.hkijena.jipipe.extensions.parameters.predicates - package org.hkijena.jipipe.extensions.parameters.predicates

org.hkijena.jipipe.extensions.parameters.primitives - package org.hkijena.jipipe.extensions.parameters.primitives

org.hkijena.jipipe.extensions.parameters.references - package org.hkijena.jipipe.extensions.parameters.references

org.hkijena.jipipe.extensions.parameters.roi - package org.hkijena.jipipe.extensions.parameters.roi

org.hkijena.jipipe.extensions.parameters.scripts - package org.hkijena.jipipe.extensions.parameters.scripts

org.hkijena.jipipe.extensions.parameters.table - package org.hkijena.jipipe.extensions.parameters.table

org.hkijena.jipipe.extensions.parameters.util - package org.hkijena.jipipe.extensions.parameters.util

org.hkijena.jipipe.extensions.plots - package org.hkijena.jipipe.extensions.plots

org.hkijena.jipipe.extensions.plots.datatypes - package org.hkijena.jipipe.extensions.plots.datatypes

org.hkijena.jipipe.extensions.plots.parameters - package org.hkijena.jipipe.extensions.plots.parameters

org.hkijena.jipipe.extensions.plots.ui.resultanalysis - package org.hkijena.jipipe.extensions.plots.ui.resultanalysis

org.hkijena.jipipe.extensions.python - package org.hkijena.jipipe.extensions.python

org.hkijena.jipipe.extensions.settings - package org.hkijena.jipipe.extensions.settings

org.hkijena.jipipe.extensions.strings - package org.hkijena.jipipe.extensions.strings

org.hkijena.jipipe.extensions.tables - package org.hkijena.jipipe.extensions.tables

org.hkijena.jipipe.extensions.tables.algorithms - package org.hkijena.jipipe.extensions.tables.algorithms

org.hkijena.jipipe.extensions.tables.datatypes - package org.hkijena.jipipe.extensions.tables.datatypes

org.hkijena.jipipe.extensions.tables.operations.converting - package org.hkijena.jipipe.extensions.tables.operations.converting

org.hkijena.jipipe.extensions.tables.operations.integrating - package org.hkijena.jipipe.extensions.tables.operations.integrating

org.hkijena.jipipe.extensions.tables.parameters - package org.hkijena.jipipe.extensions.tables.parameters

org.hkijena.jipipe.extensions.tables.parameters.collections - package org.hkijena.jipipe.extensions.tables.parameters.collections

org.hkijena.jipipe.extensions.tables.parameters.enums - package org.hkijena.jipipe.extensions.tables.parameters.enums

org.hkijena.jipipe.extensions.tables.parameters.processors - package org.hkijena.jipipe.extensions.tables.parameters.processors

org.hkijena.jipipe.extensions.tools - package org.hkijena.jipipe.extensions.tools

org.hkijena.jipipe.extensions.utils - package org.hkijena.jipipe.extensions.utils

org.hkijena.jipipe.extensions.utils.algorithms - package org.hkijena.jipipe.extensions.utils.algorithms

org.hkijena.jipipe.ui - package org.hkijena.jipipe.ui

org.hkijena.jipipe.ui.batchassistant - package org.hkijena.jipipe.ui.batchassistant

org.hkijena.jipipe.ui.cache - package org.hkijena.jipipe.ui.cache

org.hkijena.jipipe.ui.compartments - package org.hkijena.jipipe.ui.compartments

org.hkijena.jipipe.ui.compat - package org.hkijena.jipipe.ui.compat

org.hkijena.jipipe.ui.compendium - package org.hkijena.jipipe.ui.compendium

org.hkijena.jipipe.ui.components - package org.hkijena.jipipe.ui.components

org.hkijena.jipipe.ui.events - package org.hkijena.jipipe.ui.events

org.hkijena.jipipe.ui.extension - package org.hkijena.jipipe.ui.extension

org.hkijena.jipipe.ui.extensionbuilder - package org.hkijena.jipipe.ui.extensionbuilder

org.hkijena.jipipe.ui.extensions - package org.hkijena.jipipe.ui.extensions

org.hkijena.jipipe.ui.grapheditor - package org.hkijena.jipipe.ui.grapheditor

org.hkijena.jipipe.ui.grapheditor.algorithmfinder - package org.hkijena.jipipe.ui.grapheditor.algorithmfinder

org.hkijena.jipipe.ui.grapheditor.connections - package org.hkijena.jipipe.ui.grapheditor.connections

org.hkijena.jipipe.ui.grapheditor.contextmenu - package org.hkijena.jipipe.ui.grapheditor.contextmenu

org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard - package org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard

org.hkijena.jipipe.ui.grapheditor.layout - package org.hkijena.jipipe.ui.grapheditor.layout

org.hkijena.jipipe.ui.grapheditor.settings - package org.hkijena.jipipe.ui.grapheditor.settings

org.hkijena.jipipe.ui.grouping - package org.hkijena.jipipe.ui.grouping

org.hkijena.jipipe.ui.ijupdater - package org.hkijena.jipipe.ui.ijupdater

org.hkijena.jipipe.ui.parameters - package org.hkijena.jipipe.ui.parameters

org.hkijena.jipipe.ui.plotbuilder - package org.hkijena.jipipe.ui.plotbuilder

org.hkijena.jipipe.ui.project - package org.hkijena.jipipe.ui.project

org.hkijena.jipipe.ui.registries - package org.hkijena.jipipe.ui.registries

org.hkijena.jipipe.ui.resultanalysis - package org.hkijena.jipipe.ui.resultanalysis

org.hkijena.jipipe.ui.running - package org.hkijena.jipipe.ui.running

org.hkijena.jipipe.ui.settings - package org.hkijena.jipipe.ui.settings

org.hkijena.jipipe.ui.tableanalyzer - package org.hkijena.jipipe.ui.tableanalyzer

org.hkijena.jipipe.ui.testbench - package org.hkijena.jipipe.ui.testbench

org.hkijena.jipipe.ui.texteditor - package org.hkijena.jipipe.ui.texteditor

org.hkijena.jipipe.utils - package org.hkijena.jipipe.utils

outline(RoiOutline) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData

Outlines all Roi in this list by the specified algorithm.

OutlineRoiAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

Wrapper around RoiManager

OutlineRoiAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.OutlineRoiAlgorithm

Instantiates a new node type.

OutlineRoiAlgorithm(OutlineRoiAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.OutlineRoiAlgorithm

Instantiates a new node type.

OutputFolderDataSource - Class in org.hkijena.jipipe.extensions.filesystem.datasources

OutputFolderDataSource(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.datasources.OutputFolderDataSource

OutputFolderDataSource(OutputFolderDataSource) - Constructor for class org.hkijena.jipipe.extensions.filesystem.datasources.OutputFolderDataSource

OutputSlotMapParameterCollection - Class in org.hkijena.jipipe.extensions.parameters.collections

Parameter that holds a value for each data slot

OutputSlotMapParameterCollection(Class<?>, JIPipeGraphNode, Supplier<Object>, boolean) - Constructor for class org.hkijena.jipipe.extensions.parameters.collections.OutputSlotMapParameterCollection

Creates a new instance

P

padSelectedTab(int, int) - Method in class org.hkijena.jipipe.utils.CustomTabbedPaneUI.TabbedPaneLayout

paint(Graphics) - Method in class org.hkijena.jipipe.ui.components.BackgroundPanel

paint(Graphics) - Method in class org.hkijena.jipipe.ui.components.MessagePanel.Message

paint(Graphics) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

paint(Graphics) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorMinimap

paint(Graphics) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI

paint(Graphics, JComponent) - Method in class org.hkijena.jipipe.utils.CustomTabbedPaneUI

paintBorder(Component, Graphics, int, int, int, int) - Method in class org.hkijena.jipipe.utils.RoundedLineBorder

paintBottomTabBorder(int, Graphics, int, int, int, int, int, int, boolean) - Method in class org.hkijena.jipipe.utils.CustomTabbedPaneUI

paintComponent(Graphics) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

paintContentBorderBottomEdge(Graphics, int, int, int, int, int, int) - Method in class org.hkijena.jipipe.utils.CustomTabbedPaneUI

paintContentBorderLeftEdge(Graphics, int, int, int, int, int, int) - Method in class org.hkijena.jipipe.utils.CustomTabbedPaneUI

paintContentBorderRightEdge(Graphics, int, int, int, int, int, int) - Method in class org.hkijena.jipipe.utils.CustomTabbedPaneUI

paintContentBorderTopEdge(Graphics, int, int, int, int, int, int) - Method in class org.hkijena.jipipe.utils.CustomTabbedPaneUI

paintFocusIndicator(Graphics, int, Rectangle[], int, Rectangle, Rectangle, boolean) - Method in class org.hkijena.jipipe.utils.CustomTabbedPaneUI

paintHighlightBelowTab() - Method in class org.hkijena.jipipe.utils.CustomTabbedPaneUI

paintIcon(Component, Graphics, int, int) - Method in class org.hkijena.jipipe.extensions.parameters.colors.ColorMapIcon

paintIcon(Component, Graphics, int, int) - Method in class org.hkijena.jipipe.ui.components.ColorIcon

paintIcon(Component, Graphics, int, int) - Method in class org.hkijena.jipipe.ui.components.MonochromeColorIcon

paintIcon(Component, Graphics, int, int) - Method in class org.hkijena.jipipe.ui.components.ZoomIcon

paintIcon(Component, Graphics, int, int) - Method in class org.hkijena.jipipe.utils.CheckBoxIcon

paintLeftTabBorder(int, Graphics, int, int, int, int, int, int, boolean) - Method in class org.hkijena.jipipe.utils.CustomTabbedPaneUI

paintRightTabBorder(int, Graphics, int, int, int, int, int, int, boolean) - Method in class org.hkijena.jipipe.utils.CustomTabbedPaneUI

paintTabBackground(Graphics, int, int, int, int, int, int, boolean) - Method in class org.hkijena.jipipe.utils.CustomTabbedPaneUI

paintTabBorder(Graphics, int, int, int, int, int, int, boolean) - Method in class org.hkijena.jipipe.utils.CustomTabbedPaneUI

paintTopTabBorder(int, Graphics, int, int, int, int, int, int, boolean) - Method in class org.hkijena.jipipe.utils.CustomTabbedPaneUI

Pair<K,V> - Class in org.hkijena.jipipe.extensions.parameters.pairs

Parameter equivalent of Map.Entry

Pair(Class<K>, Class<V>) - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.Pair

Pair(Pair<K, V>) - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.Pair

Creates a copy.

Pair.Deserializer<K,V> - Class in org.hkijena.jipipe.extensions.parameters.pairs

Deserializes the parameter

Pair.Serializer - Class in org.hkijena.jipipe.extensions.parameters.pairs

Serializes the parameter

PairParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.pairs

Editor for Pair

PairParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterEditorUI

Creates new instance

PairParameterKeyAccess<K,V> - Class in org.hkijena.jipipe.extensions.parameters.pairs

Parameter access for the key entry in Pair

PairParameterKeyAccess(JIPipeParameterAccess, Pair<K, V>) - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterKeyAccess

Creates a new instance

PairParameterSettings - Annotation Type in org.hkijena.jipipe.extensions.parameters.pairs

Allows to control the behavior of Pair

PairParameterValueAccess<K,V> - Class in org.hkijena.jipipe.extensions.parameters.pairs

Parameter access for the key entry in Pair

PairParameterValueAccess(JIPipeParameterAccess, Pair<K, V>) - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterValueAccess

Creates a new instance

panel - Variable in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog

PARAM_BOTTOM - Static variable in class org.hkijena.jipipe.extensions.parameters.roi.Margin

PARAM_HEIGHT - Static variable in class org.hkijena.jipipe.extensions.parameters.roi.Margin

PARAM_LEFT - Static variable in class org.hkijena.jipipe.extensions.parameters.roi.Margin

PARAM_RIGHT - Static variable in class org.hkijena.jipipe.extensions.parameters.roi.Margin

PARAM_TOP - Static variable in class org.hkijena.jipipe.extensions.parameters.roi.Margin

PARAM_WIDTH - Static variable in class org.hkijena.jipipe.extensions.parameters.roi.Margin

ParameterChangedEvent - Class in org.hkijena.jipipe.api.events

Triggered when a parameter holder's parameters are changed

ParameterChangedEvent(Object, String) - Constructor for class org.hkijena.jipipe.api.events.ParameterChangedEvent

ParameterColumn() - Constructor for class org.hkijena.jipipe.extensions.parameters.table.ParameterTable.ParameterColumn

Creates a new instance.

ParameterColumn(ParameterTable.ParameterColumn) - Constructor for class org.hkijena.jipipe.extensions.parameters.table.ParameterTable.ParameterColumn

Creates a copy

ParameterColumn(String, String, Class<?>) - Constructor for class org.hkijena.jipipe.extensions.parameters.table.ParameterTable.ParameterColumn

Creates a new instance

ParameterPanel - Class in org.hkijena.jipipe.ui.parameters

UI around a JIPipeParameterCollection

ParameterPanel(JIPipeWorkbench, JIPipeParameterCollection, MarkdownDocument, int) - Constructor for class org.hkijena.jipipe.ui.parameters.ParameterPanel

ParameterReferencesChangedEvent - Class in org.hkijena.jipipe.api.grouping.events

Triggered by GraphNodeParameters and related classes

ParameterReferencesChangedEvent() - Constructor for class org.hkijena.jipipe.api.grouping.events.ParameterReferencesChangedEvent

ParametersData - Class in org.hkijena.jipipe.extensions.multiparameters.datatypes

Stores the parameters of an algorithm

ParametersData() - Constructor for class org.hkijena.jipipe.extensions.multiparameters.datatypes.ParametersData

ParametersData.Serializer - Class in org.hkijena.jipipe.extensions.multiparameters.datatypes

Serializes ParametersData

ParametersDataDefinition - Class in org.hkijena.jipipe.extensions.multiparameters.datasources

Generates ParametersData objects

ParametersDataDefinition(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.multiparameters.datasources.ParametersDataDefinition

Creates a new instance

ParametersDataDefinition(ParametersDataDefinition) - Constructor for class org.hkijena.jipipe.extensions.multiparameters.datasources.ParametersDataDefinition

Copies the algorithm

ParametersDataTableDefinition - Class in org.hkijena.jipipe.extensions.multiparameters.datasources

Generates ParametersData objects

ParametersDataTableDefinition(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.multiparameters.datasources.ParametersDataTableDefinition

Creates a new instance

ParametersDataTableDefinition(ParametersDataTableDefinition) - Constructor for class org.hkijena.jipipe.extensions.multiparameters.datasources.ParametersDataTableDefinition

Creates a copy

ParameterSlotAlgorithmSettings() - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm.ParameterSlotAlgorithmSettings

ParameterSlotAlgorithmSettings(JIPipeParameterSlotAlgorithm.ParameterSlotAlgorithmSettings) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm.ParameterSlotAlgorithmSettings

ParameterSlotPythonScriptAlgorithm - Class in org.hkijena.jipipe.extensions.python

An algorithm that allows to run Python code

ParameterSlotPythonScriptAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.python.ParameterSlotPythonScriptAlgorithm

Creates a new instance

ParameterSlotPythonScriptAlgorithm(ParameterSlotPythonScriptAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.python.ParameterSlotPythonScriptAlgorithm

Creates a copy

ParameterStructureChangedEvent - Class in org.hkijena.jipipe.api.events

Triggered by an JIPipeParameterCollection if the list of available parameters is changed

ParameterStructureChangedEvent(JIPipeParameterCollection) - Constructor for class org.hkijena.jipipe.api.events.ParameterStructureChangedEvent

ParameterTable - Class in org.hkijena.jipipe.extensions.parameters.table

Table of other parameters

ParameterTable() - Constructor for class org.hkijena.jipipe.extensions.parameters.table.ParameterTable

Creates a new table

ParameterTable(ParameterTable) - Constructor for class org.hkijena.jipipe.extensions.parameters.table.ParameterTable

Creates a copy

ParameterTable.Deserializer - Class in org.hkijena.jipipe.extensions.parameters.table

Deserializes a ParameterTable

ParameterTable.ParameterColumn - Class in org.hkijena.jipipe.extensions.parameters.table

Column in the parameter table

ParameterTable.Serializer - Class in org.hkijena.jipipe.extensions.parameters.table

Serializes a ParameterTable

ParameterTableCellAccess - Class in org.hkijena.jipipe.extensions.parameters.table

Implements the access to table cell

ParameterTableCellAccess(JIPipeParameterAccess, ParameterTable, int, int) - Constructor for class org.hkijena.jipipe.extensions.parameters.table.ParameterTableCellAccess

Creates a new instance

ParameterTableEditorUI - Class in org.hkijena.jipipe.extensions.parameters.table

UI for ParameterTable

ParameterTableEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.table.ParameterTableEditorUI

Creates new instance

ParameterTesterMenuExtension - Class in org.hkijena.jipipe.extensions.parameters

Adds an entry "New table" to the JIPipe menu

ParameterTesterMenuExtension(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.extensions.parameters.ParameterTesterMenuExtension

Creates a new instance

ParameterTreeUI - Class in org.hkijena.jipipe.ui.components

Displays the contents of JIPipeParameterTree.

ParameterTreeUI() - Constructor for class org.hkijena.jipipe.ui.components.ParameterTreeUI

Creates a new empty instance

ParameterTreeUI(JIPipeParameterTree) - Constructor for class org.hkijena.jipipe.ui.components.ParameterTreeUI

Creates a new instance

ParameterTreeUI.Renderer - Class in org.hkijena.jipipe.ui.components

Renders the entries

ParameterUITester - Class in org.hkijena.jipipe.utils

UI that shows all parameter types

ParameterUITester(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.utils.ParameterUITester

Creates a new instance

passParametersToPython(PythonInterpreter, JIPipeCustomParameterCollection) - Static method in class org.hkijena.jipipe.utils.PythonUtils

PasteCompartmentGraphHistorySnapshot - Class in org.hkijena.jipipe.api.history

PasteCompartmentGraphHistorySnapshot(JIPipeProject, JIPipeProjectCompartment) - Constructor for class org.hkijena.jipipe.api.history.PasteCompartmentGraphHistorySnapshot

PasteNodeGraphHistorySnapshot - Class in org.hkijena.jipipe.api.history

PasteNodeGraphHistorySnapshot(JIPipeGraph, Set<JIPipeGraphNode>) - Constructor for class org.hkijena.jipipe.api.history.PasteNodeGraphHistorySnapshot

PathData - Class in org.hkijena.jipipe.extensions.filesystem.dataypes

Encapsulates a Path

PathData(Path) - Constructor for class org.hkijena.jipipe.extensions.filesystem.dataypes.PathData

Initializes file data from a file

PathData() - Constructor for class org.hkijena.jipipe.extensions.filesystem.dataypes.PathData

PathDataImageJAdapter - Class in org.hkijena.jipipe.extensions.filesystem.compat

Allows importing of path data from within ImageJ The main 'ImageJ' data type is File, but this also allows conversion from String, Path and ResultsTable.

PathDataImageJAdapter(Class<? extends PathData>) - Constructor for class org.hkijena.jipipe.extensions.filesystem.compat.PathDataImageJAdapter

Creates a new instance

PathDataImporterUI - Class in org.hkijena.jipipe.extensions.filesystem.compat

Imports PathData

PathDataImporterUI(ImageJDatatypeImporter) - Constructor for class org.hkijena.jipipe.extensions.filesystem.compat.PathDataImporterUI

PathEditor - Class in org.hkijena.jipipe.ui.components

Text field with a file selection

PathEditor() - Constructor for class org.hkijena.jipipe.ui.components.PathEditor

Creates a new file selection that opens a file

PathEditor(PathEditor.IOMode, PathEditor.PathMode) - Constructor for class org.hkijena.jipipe.ui.components.PathEditor

PathEditor.IOMode - Enum in org.hkijena.jipipe.ui.components

Determines if a path is opened or saved

PathEditor.PathMode - Enum in org.hkijena.jipipe.ui.components

Determines the type of selected path

PathList - Class in org.hkijena.jipipe.extensions.parameters.primitives

Collection of paths.

PathList() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.PathList

Creates a new instance

PathList(PathList) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.PathList

Creates a copy

PathListCellRenderer - Class in org.hkijena.jipipe.ui.components

PathListCellRenderer() - Constructor for class org.hkijena.jipipe.ui.components.PathListCellRenderer

PathListParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.primitives

Editor for PathList

PathListParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.PathListParameterEditorUI

PathPredicate - Class in org.hkijena.jipipe.extensions.parameters.predicates

A filter for path filenames that can handle multiple filter modes

PathPredicate() - Constructor for class org.hkijena.jipipe.extensions.parameters.predicates.PathPredicate

Initializes a new filter.

PathPredicate(PathPredicate) - Constructor for class org.hkijena.jipipe.extensions.parameters.predicates.PathPredicate

Copies the filter

PathPredicate.List - Class in org.hkijena.jipipe.extensions.parameters.predicates

A collection of multiple PathPredicate The filters are connected via "OR"

PathPredicate.Mode - Enum in org.hkijena.jipipe.extensions.parameters.predicates

Available filter modes

PathPredicateParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.predicates

Editor for PathPredicate

PathPredicateParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.predicates.PathPredicateParameterEditorUI

PathUtils - Class in org.hkijena.jipipe.utils

Utilities for handling paths

pickColumn(ResultsTableData) - Method in class org.hkijena.jipipe.extensions.tables.parameters.TableColumnSourceParameter

Returns a column according to the data

PickNodeDialog - Class in org.hkijena.jipipe.ui.components

UI that adds slots to an algorithm

PickNodeDialog(Window, Set<JIPipeGraphNode>, JIPipeGraphNode) - Constructor for class org.hkijena.jipipe.ui.components.PickNodeDialog

Pie2DPlotData - Class in org.hkijena.jipipe.extensions.plots.datatypes

Generates a bar category plot

Pie2DPlotData() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.Pie2DPlotData

Creates a new instance

Pie2DPlotData(Pie2DPlotData) - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.Pie2DPlotData

Creates a copy

Pie3DPlotData - Class in org.hkijena.jipipe.extensions.plots.datatypes

Generates a bar category plot

Pie3DPlotData() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.Pie3DPlotData

Creates a new instance

Pie3DPlotData(Pie3DPlotData) - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.Pie3DPlotData

Creates a copy

PiePlotData - Class in org.hkijena.jipipe.extensions.plots.datatypes

Contains data for pie plots.

PiePlotData() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.PiePlotData

Creates a new instance

PiePlotData(PiePlotData) - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.PiePlotData

Creates a copy

PlotColumn - Annotation Type in org.hkijena.jipipe.extensions.plots.datatypes

Defines that a PlotData has

PlotData - Class in org.hkijena.jipipe.extensions.plots.datatypes

Contains all necessary data to generate a plot

PlotData() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.PlotData

Creates a new empty instance

PlotData(PlotData) - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.PlotData

Creates a copy of the provided data

PlotData.Serializer - Class in org.hkijena.jipipe.extensions.plots.datatypes

Serializes the metadata of PlotData

PlotDataSeries - Class in org.hkijena.jipipe.extensions.plots.datatypes

A data series (table) that is rendered as plot series

PlotDataSeries() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.PlotDataSeries

Creates a new instance with a null table

PlotDataSeries(ResultsTable) - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.PlotDataSeries

Creates a new instance from a ResultsTable

PlotDataSeries(PlotDataSeries) - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.PlotDataSeries

Creates a copy

PlotDataSeriesColumnListCellRenderer - Class in org.hkijena.jipipe.ui.plotbuilder

Renders entries

PlotDataSeriesColumnListCellRenderer() - Constructor for class org.hkijena.jipipe.ui.plotbuilder.PlotDataSeriesColumnListCellRenderer

Creates a new renderer

PlotDataSlotPreviewUI - Class in org.hkijena.jipipe.extensions.plots.ui.resultanalysis

Renders a plot data as table cell

PlotDataSlotPreviewUI(JTable) - Constructor for class org.hkijena.jipipe.extensions.plots.ui.resultanalysis.PlotDataSlotPreviewUI

Creates a new renderer

PlotDataSlotRowUI - Class in org.hkijena.jipipe.extensions.plots.ui.resultanalysis

Result UI for PlotData

PlotDataSlotRowUI(JIPipeProjectWorkbench, JIPipeDataSlot, JIPipeExportedDataTable.Row) - Constructor for class org.hkijena.jipipe.extensions.plots.ui.resultanalysis.PlotDataSlotRowUI

Creates a new UI

PlotExporterDialog - Class in org.hkijena.jipipe.ui.components

Dialog that exports plots as image

PlotExporterDialog(JFreeChart) - Constructor for class org.hkijena.jipipe.ui.components.PlotExporterDialog

PlotGeneratorAlgorithm - Class in org.hkijena.jipipe.extensions.plots

Algorithm that creates PlotData from ResultsTableData

PlotGeneratorAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.plots.PlotGeneratorAlgorithm

Creates a new instance

PlotGeneratorAlgorithm(PlotGeneratorAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.plots.PlotGeneratorAlgorithm

Creates a copy

PlotMetadata - Annotation Type in org.hkijena.jipipe.extensions.plots.datatypes

Annotates a PlotData with information about plots

PlotReader - Class in org.hkijena.jipipe.ui.components

Displays a plot

PlotReader() - Constructor for class org.hkijena.jipipe.ui.components.PlotReader

Creates a new instance

PlotsExtension - Class in org.hkijena.jipipe.extensions.plots

Provides a standard selection of plots

PlotsExtension() - Constructor for class org.hkijena.jipipe.extensions.plots.PlotsExtension

PlotToImageTypeConverter - Class in org.hkijena.jipipe.extensions.imagejdatatypes.algorithms

PlotToImageTypeConverter() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.PlotToImageTypeConverter

PointRange - Class in org.hkijena.jipipe.utils

Stores three points, representing the center point, and an area around it All values are absolute.

PointRange() - Constructor for class org.hkijena.jipipe.utils.PointRange

Creates a new point range at 0, 0 without areas around them

PointRange(PointRange) - Constructor for class org.hkijena.jipipe.utils.PointRange

PointRange(int, int) - Constructor for class org.hkijena.jipipe.utils.PointRange

Creates a new point range without margins around it

PointRange(Point, Point, Point) - Constructor for class org.hkijena.jipipe.utils.PointRange

Creates a point range and initializes all values

preferredLayoutSize(Container) - Method in class org.hkijena.jipipe.ui.components.ModifiedFlowLayout

PrefixedIconListCellRenderer - Class in org.hkijena.jipipe.ui.components

Renders entries in JIPipeIconPickerDialog

PrefixedIconListCellRenderer(String) - Constructor for class org.hkijena.jipipe.ui.components.PrefixedIconListCellRenderer

preview(int, int) - Method in interface org.hkijena.jipipe.api.data.JIPipeData

This function generates a preview component for usage within the GUI Can return null

preview(int, int) - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageData

preview(int, int) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ImagePlusData

preview(int, int) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.OMEImageData

preview(int, int) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData

preview(int, int) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData

preview(int, int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

PRIMARY1 - Static variable in class org.hkijena.jipipe.utils.ModernMetalTheme

PRIMARY2 - Static variable in class org.hkijena.jipipe.utils.ModernMetalTheme

PRIMARY3 - Static variable in class org.hkijena.jipipe.utils.ModernMetalTheme

PRIMARY4 - Static variable in class org.hkijena.jipipe.utils.ModernMetalTheme

PRIMARY5 - Static variable in class org.hkijena.jipipe.utils.ModernMetalTheme

PRIMARY6 - Static variable in class org.hkijena.jipipe.utils.ModernMetalTheme

print() - Method in class org.hkijena.jipipe.api.JIPipeValidityReport

Prints messages to the standard error

process(List<String>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.utils.Hough_Circle

process(List<Object>) - Method in class org.hkijena.jipipe.ui.running.JIPipeRunWorker

ProgressAdapter - Class in org.hkijena.jipipe.ui.ijupdater

Adapter between JIPipe and ImageJ progress implementations

ProgressAdapter(Consumer<JIPipeRunnerStatus>) - Constructor for class org.hkijena.jipipe.ui.ijupdater.ProgressAdapter

ProjectsSettings - Class in org.hkijena.jipipe.extensions.settings

Remembers the last projects

ProjectsSettings() - Constructor for class org.hkijena.jipipe.extensions.settings.ProjectsSettings

ProjectsSettings.ProjectTemplateEnum - Class in org.hkijena.jipipe.extensions.settings

An enum of JIPipeProjectTemplate

ProjectTemplateEnum() - Constructor for class org.hkijena.jipipe.extensions.settings.ProjectsSettings.ProjectTemplateEnum

ProjectTemplateEnum(ProjectsSettings.ProjectTemplateEnum) - Constructor for class org.hkijena.jipipe.extensions.settings.ProjectsSettings.ProjectTemplateEnum

pull() - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageData

Extracts ImagePlusData from the GPU memory

pullOutput() - Method in class org.hkijena.jipipe.api.compat.SingleImageJAlgorithmRun

Extracts algorithm output into ImageJ.

pushInput() - Method in class org.hkijena.jipipe.api.compat.SingleImageJAlgorithmRun

Pushes selected ImageJ data into the algorithm input slots

PythonExtension - Class in org.hkijena.jipipe.extensions.python

Python nodes

PythonExtension() - Constructor for class org.hkijena.jipipe.extensions.python.PythonExtension

PythonScript - Class in org.hkijena.jipipe.extensions.parameters.scripts

Encapsulates ImageJ macro code to be detected by the parameter system

PythonScript() - Constructor for class org.hkijena.jipipe.extensions.parameters.scripts.PythonScript

PythonScript(PythonScript) - Constructor for class org.hkijena.jipipe.extensions.parameters.scripts.PythonScript

PythonScriptAlgorithm - Class in org.hkijena.jipipe.extensions.python

An algorithm that allows to run Python code

PythonScriptAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.python.PythonScriptAlgorithm

Creates a new instance

PythonScriptAlgorithm(PythonScriptAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.python.PythonScriptAlgorithm

Creates a copy

PythonUtils - Class in org.hkijena.jipipe.utils

Utilities for Jython

R

RadiansToDegreeColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting

Applies a abs(x) function

RadiansToDegreeColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.RadiansToDegreeColumnOperation

rank(Object, String[]) - Method in class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmFinderUI.Ranking

rank(UpdateSite, String[]) - Method in class org.hkijena.jipipe.ui.ijupdater.UpdateSiteListUI.Ranking

rank(T, String[]) - Method in interface org.hkijena.jipipe.utils.RankingFunction

Ranks the value in conjunction with the filter strings

RankedData<T> - Class in org.hkijena.jipipe.utils

RankedData(T, int[]) - Constructor for class org.hkijena.jipipe.utils.RankedData

Ranking(JIPipeDataSlot) - Constructor for class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmFinderUI.Ranking

Ranking() - Constructor for class org.hkijena.jipipe.ui.ijupdater.UpdateSiteListUI.Ranking

RankingFunction<T> - Interface in org.hkijena.jipipe.utils

Models a search ranking function

readFromOverlays() - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ROIHandler

Returns rois if any from the overlay.

readFromRoiManager() - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ROIHandler

Returns the rois if any stored in the ROI manager.

readImageFrom(Path) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.ImagePlusFromFile

Loads an image from a file path

realLocationToGrid(Point, double) - Method in enum org.hkijena.jipipe.ui.grapheditor.JIPipeGraphViewMode

rebuildModel() - Method in class org.hkijena.jipipe.ui.components.ParameterTreeUI

Recreates the tree model

rebuildPlot() - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotBuilderUI

Attempts to rebuild the current plot

RecentJsonExtensionsMenu - Class in org.hkijena.jipipe.ui.components

Menu that displays recently opened JIPipeJsonExtension

RecentJsonExtensionsMenu(String, Icon, JIPipeJsonExtensionWindow) - Constructor for class org.hkijena.jipipe.ui.components.RecentJsonExtensionsMenu

RecentProjectListCellRenderer - Class in org.hkijena.jipipe.ui.components

Renders a recent project

RecentProjectListCellRenderer() - Constructor for class org.hkijena.jipipe.ui.components.RecentProjectListCellRenderer

RecentProjectsMenu - Class in org.hkijena.jipipe.ui.components

Menu that displays recently opened JIPipeProject

RecentProjectsMenu(String, Icon, JIPipeProjectWindow) - Constructor for class org.hkijena.jipipe.ui.components.RecentProjectsMenu

recheckValidity() - Method in class org.hkijena.jipipe.ui.components.ReloadableValidityChecker

Revalidates the object

recheckValidity() - Method in class org.hkijena.jipipe.ui.extensions.JIPipePluginValidityCheckerButton

Triggers a validity check

RectangleDeserializer - Class in org.hkijena.jipipe.extensions.parameters.roi

Deserializer for Color

RectangleDeserializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.roi.RectangleDeserializer

RectangleList - Class in org.hkijena.jipipe.extensions.parameters.roi

List parameter of Rectangle

RectangleList() - Constructor for class org.hkijena.jipipe.extensions.parameters.roi.RectangleList

Creates a new instance

RectangleList(RectangleList) - Constructor for class org.hkijena.jipipe.extensions.parameters.roi.RectangleList

Creates a copy

RectangleParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.roi

Editor for a any numeric parameter

RectangleParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.roi.RectangleParameterEditorUI

RectangleSerializer - Class in org.hkijena.jipipe.extensions.parameters.roi

Serializer for Rectangle

RectangleSerializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.roi.RectangleSerializer

RectangularLine - Class in org.hkijena.jipipe.ui.grapheditor.connections

Contains coordinates of a line that is rectangular This abstracts away x and y for horizontal and vertical implementations

RectangularLine(int, int, int, int) - Constructor for class org.hkijena.jipipe.ui.grapheditor.connections.RectangularLine

RectangularLineDrawer - Class in org.hkijena.jipipe.ui.grapheditor.connections

Encapsulates drawing rectangular lines

RectangularLineDrawer() - Constructor for class org.hkijena.jipipe.ui.grapheditor.connections.RectangularLineDrawer

red - Variable in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog

redo() - Method in class org.hkijena.jipipe.api.history.AddCompartmentGraphHistorySnapshot

redo() - Method in class org.hkijena.jipipe.api.history.AddNodeGraphHistorySnapshot

redo() - Method in class org.hkijena.jipipe.api.history.CompoundGraphHistorySnapshot

redo() - Method in class org.hkijena.jipipe.api.history.DeleteCompartmentGraphHistorySnapshot

redo() - Method in class org.hkijena.jipipe.api.history.EdgeConnectGraphHistorySnapshot

redo() - Method in class org.hkijena.jipipe.api.history.EdgeDisconnectAllTargetsGraphHistorySnapshot

redo() - Method in class org.hkijena.jipipe.api.history.EdgeDisconnectGraphHistorySnapshot

redo() - Method in class org.hkijena.jipipe.api.history.GraphChangedHistorySnapshot

redo() - Method in class org.hkijena.jipipe.api.history.ImportCompartmentGraphHistorySnapshot

redo() - Method in interface org.hkijena.jipipe.api.history.JIPipeAlgorithmGraphHistorySnapshot

Repeats the operation

redo() - Method in class org.hkijena.jipipe.api.history.JIPipeGraphHistory

Repeats the last reverted operation

redo() - Method in class org.hkijena.jipipe.api.history.MoveNodesGraphHistorySnapshot

redo() - Method in class org.hkijena.jipipe.api.history.RemoveNodeGraphHistorySnapshot

redo() - Method in class org.hkijena.jipipe.api.history.SlotConfigurationHistorySnapshot

redrawPlot() - Method in class org.hkijena.jipipe.ui.components.PlotReader

Redraws the plot

ReferencedAppendRectangularRoiAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

Wrapper around RoiManager

ReferencedAppendRectangularRoiAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ReferencedAppendRectangularRoiAlgorithm

Instantiates a new node type.

ReferencedAppendRectangularRoiAlgorithm(ReferencedAppendRectangularRoiAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ReferencedAppendRectangularRoiAlgorithm

Instantiates a new node type.

ReferencedDefineRectangularRoiAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

Wrapper around RoiManager

ReferencedDefineRectangularRoiAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ReferencedDefineRectangularRoiAlgorithm

Instantiates a new node type.

ReferencedDefineRectangularRoiAlgorithm(ReferencedDefineRectangularRoiAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ReferencedDefineRectangularRoiAlgorithm

Instantiates a new node type.

reflectionAccess(JIPipeParameterCollection, Method, Method) - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess.Builder

Sets up access via reflection The field class is extracted from the getter return type

ReflectionUtils - Class in org.hkijena.jipipe.utils

Utilities around reflection

refreshForm() - Method in class org.hkijena.jipipe.ui.parameters.ParameterPanel

Recreates the UI elements.

refreshList() - Method in class org.hkijena.jipipe.ui.ijupdater.UpdateSiteListUI

RefreshRepositoryRun - Class in org.hkijena.jipipe.ui.ijupdater

A run that is used for the updater

RefreshRepositoryRun() - Constructor for class org.hkijena.jipipe.ui.ijupdater.RefreshRepositoryRun

refreshTable() - Method in class org.hkijena.jipipe.ui.ijupdater.ManagerUI

refreshTraitList() - Method in class org.hkijena.jipipe.ui.components.JIPipeDataTypePicker

Refreshes the list

refreshTraitList() - Method in class org.hkijena.jipipe.ui.components.JIPipeNodeInfoPicker

Refreshes the list

refreshTree() - Method in class org.hkijena.jipipe.ui.cache.JIPipeAlgorithmCacheTree

Rebuilds the tree

refreshTree() - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheTree

Rebuilds the tree

refreshUpdater() - Method in class org.hkijena.jipipe.ui.ijupdater.JIPipeImageJPluginManager

register() - Method in class org.hkijena.jipipe.api.compartments.JIPipeCompartmentsExtension

register() - Method in class org.hkijena.jipipe.api.grouping.GroupingExtension

register() - Method in class org.hkijena.jipipe.api.grouping.JsonNodeRegistrationTask

register(String, Class<? extends JIPipeData>, JIPipeDependency) - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry

Registers a data type

register(ImageJDatatypeAdapter) - Method in class org.hkijena.jipipe.api.registries.JIPipeImageJAdapterRegistry

Registers an adapter

register() - Method in class org.hkijena.jipipe.api.registries.JIPipeJavaNodeRegistrationTask

register() - Method in interface org.hkijena.jipipe.api.registries.JIPipeNodeRegistrationTask

Runs the registration

register(JIPipeNodeInfo, JIPipeDependency) - Method in class org.hkijena.jipipe.api.registries.JIPipeNodeRegistry

Registers an algorithm info

register(JIPipeParameterTypeInfo) - Method in class org.hkijena.jipipe.api.registries.JIPipeParameterTypeRegistry

Registers a new parameter type

register(String, String, Icon, String, Icon, JIPipeParameterCollection) - Method in class org.hkijena.jipipe.api.registries.JIPipeSettingsRegistry

Registers a new settings sheet

register() - Method in class org.hkijena.jipipe.extensions.annotation.AnnotationsExtension

register() - Method in class org.hkijena.jipipe.extensions.clij2.CLIJExtension

register() - Method in class org.hkijena.jipipe.extensions.core.CoreExtension

register() - Method in class org.hkijena.jipipe.extensions.filesystem.FilesystemExtension

register() - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingExtension

register() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ImageJAlgorithmsExtension

register() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesExtension

register() - Method in class org.hkijena.jipipe.extensions.jsonextensionloader.JsonExtensionLoaderExtension

register() - Method in class org.hkijena.jipipe.extensions.multiparameters.MultiParameterAlgorithmsExtension

register() - Method in class org.hkijena.jipipe.extensions.multiparameters.MultiParametersExtension

register() - Method in class org.hkijena.jipipe.extensions.parameters.StandardParametersExtension

register() - Method in class org.hkijena.jipipe.extensions.plots.PlotsExtension

register() - Method in class org.hkijena.jipipe.extensions.python.PythonExtension

register() - Method in class org.hkijena.jipipe.extensions.settings.StandardSettingsExtension

register() - Method in class org.hkijena.jipipe.extensions.strings.StringsExtension

register() - Method in class org.hkijena.jipipe.extensions.tables.TablesExtension

register() - Method in class org.hkijena.jipipe.extensions.tools.ToolsExtension

register() - Method in class org.hkijena.jipipe.extensions.utils.UtilitiesExtension

register(JIPipeJsonExtension) - Method in class org.hkijena.jipipe.JIPipeDefaultRegistry

Registers a JSON extension

register() - Method in interface org.hkijena.jipipe.JIPipeJavaExtension

Registers custom modules into JIPipe

register() - Method in class org.hkijena.jipipe.JIPipeJsonExtension

Registers the content.

register(Class<? extends MenuExtension>) - Method in class org.hkijena.jipipe.ui.registries.JIPipeUIMenuServiceRegistry

Registers a new extension

registerAction(String, String, Icon, Consumer<JIPipeDataSlot>) - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeDefaultResultDataSlotRowUI

Registers an action for the data slot

registerActions() - Method in class org.hkijena.jipipe.extensions.filesystem.resultanalysis.FilesystemDataSlotRowUI

registerActions() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImageDataSlotRowUI

registerActions() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageDataSlotRowUI

registerActions() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ROIDataSlotRowUI

registerActions() - Method in class org.hkijena.jipipe.extensions.plots.ui.resultanalysis.PlotDataSlotRowUI

registerActions() - Method in class org.hkijena.jipipe.extensions.strings.StringResultDataSlotRowUI

registerActions() - Method in class org.hkijena.jipipe.extensions.tables.ResultsTableDataSlotRowUI

registerActions() - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeDefaultResultDataSlotRowUI

Override this method to add actions The last added action is displayed as full button

registerCategory(JIPipeNodeTypeCategory) - Method in class org.hkijena.jipipe.api.registries.JIPipeNodeRegistry

Registers a category

registerColumnOperation(String, ColumnOperation, String, String, String) - Method in class org.hkijena.jipipe.api.registries.JIPipeTableRegistry

Registers a new operation

registerConversion(JIPipeDataConverter) - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry

Registers a data converter that allows implicit conversion between data types

registerDatatype(String, Class<? extends JIPipeData>, URL, Class<? extends JIPipeResultDataSlotRowUI>, Class<? extends JIPipeResultDataSlotPreviewUI>) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension

Registers a new data type

registerDatatypeConversion(JIPipeDataConverter) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension

Registers a non-trivial conversion between data types.

registerEnumParameterType(String, Class<? extends Enum<?>>, String, String) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension

Registers an Enum as parameter

registerGenerator(Class<?>, Class<? extends JIPipeParameterGeneratorUI>, String, String) - Method in class org.hkijena.jipipe.ui.registries.JIPipeUIParameterTypeRegistry

Registers a UI that can generate parameters

registerIcon(Class<? extends JIPipeData>, URL) - Method in class org.hkijena.jipipe.ui.registries.JIPipeUIDatatypeRegistry

Registers a custom icon for a datatype

registerIcon(JIPipeNodeInfo, URL) - Method in class org.hkijena.jipipe.ui.registries.JIPipeUINodeRegistry

Registers a custom icon for a trait

registerImageJDataAdapter(ImageJDatatypeAdapter, Class<? extends ImageJDatatypeImporterUI>) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension

Registers an adapter between ImageJ and JIPipe data types

registerImporterFor(Class<?>, Class<? extends ImageJDatatypeImporterUI>) - Method in class org.hkijena.jipipe.ui.registries.JIPipeUIImageJDatatypeAdapterRegistry

registerJsonExtensionFromFile(Path) - Method in class org.hkijena.jipipe.extensions.jsonextensionloader.JsonExtensionLoaderExtension

Schedules a registration task for the file path

registerJsonExtensionFromResource(String) - Method in class org.hkijena.jipipe.extensions.jsonextensionloader.JsonExtensionLoaderExtension

Schedules a registration task for a resource path

registerMenuExtension(Class<? extends MenuExtension>) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension

Registers a custom menu entry.

registerNodeType(String, Class<? extends JIPipeGraphNode>) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension

Registers a new node type.

registerNodeType(String, Class<? extends JIPipeGraphNode>, URL) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension

Registers a new node type.

registerNodeType(JIPipeNodeInfo) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension

Registers a new node type.

registerNodeType(JIPipeNodeInfo, URL) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension

Registers a new node type.

registerNodeType(JIPipeNodeRegistrationTask) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension

Registers a new node type with additional dependencies.

registerNodeTypeCategory(JIPipeNodeTypeCategory) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension

Registers a node type category

registerParameterEditor(Class<?>, Class<? extends JIPipeParameterEditorUI>) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension

Registers an editor for any parameter type that inherits from the provided parameter class.

registerParameterEditor(Class<?>, Class<? extends JIPipeParameterEditorUI>) - Method in class org.hkijena.jipipe.ui.registries.JIPipeUIParameterTypeRegistry

Registers a new parameter type

registerParameterGenerator(Class<?>, Class<? extends JIPipeParameterGeneratorUI>, String, String) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension

Registers a UI that can generate parameters

registerParameterType(String, Class<?>, Supplier<Object>, Function<Object, Object>, String, String, Class<? extends JIPipeParameterEditorUI>) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension

Registers a new parameter type and respective editors

registerParameterType(String, Class<T>, Class<? extends ListParameter<T>>, Supplier<Object>, Function<Object, Object>, String, String, Class<? extends JIPipeParameterEditorUI>) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension

Registers a new parameter type and respective editors

registerParameterType(JIPipeParameterTypeInfo, Class<? extends JIPipeParameterEditorUI>) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension

Registers a new parameter type and respective editor

registerParameterType(JIPipeParameterTypeInfo, Class<?>, Class<? extends JIPipeParameterEditorUI>) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension

Registers a new parameter type and respective editor

registerResultSlotUI(Class<? extends JIPipeData>, Class<? extends JIPipeResultDataSlotRowUI>) - Method in class org.hkijena.jipipe.ui.registries.JIPipeUIDatatypeRegistry

Registers a custom UI for a result data slot

registerResultTableCellUI(Class<? extends JIPipeData>, Class<? extends JIPipeResultDataSlotPreviewUI>) - Method in class org.hkijena.jipipe.ui.registries.JIPipeUIDatatypeRegistry

Registers a custom renderer for the data displayed in the dataslot result table

registerSettingsSheet(String, String, Icon, String, Icon, JIPipeParameterCollection) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension

Registers a new settings sheet

registerSubParameter(JIPipeParameterCollection) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Registers a sub-parameter instance to pass ParameterStructureChangedEvent via this algorithm's EventBus

registerTableColumnOperation(String, ColumnOperation, String, String, String) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension

Registers a table column operation.

RelativizeByParameter - Class in org.hkijena.jipipe.extensions.filesystem.algorithms

Applies subfolder navigation to each input folder

RelativizeByParameter(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.RelativizeByParameter

RelativizeByParameter(RelativizeByParameter) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.RelativizeByParameter

Copies the algorithm

RelativizePaths - Class in org.hkijena.jipipe.extensions.filesystem.algorithms

Applies subfolder navigation to each input folder

RelativizePaths(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.RelativizePaths

RelativizePaths(RelativizePaths) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.RelativizePaths

Copies the algorithm

reload() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterEditorUI

reload() - Method in class org.hkijena.jipipe.api.grouping.parameters.NodeGroupContentsParameterEditorUI

reload() - Method in class org.hkijena.jipipe.api.registries.JIPipeSettingsRegistry

Reloads the settings from the default file if it exists

reload() - Method in class org.hkijena.jipipe.extensions.parameters.collections.ListParameterEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.parameters.colors.ColorParameterEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.parameters.editors.JIPipeAlgorithmIconRefParameterEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.parameters.editors.JIPipeDataInfoRefParameterEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.parameters.editors.JIPipeNodeInfoRefParameterEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.parameters.editors.JIPipeParameterCollectionVisibilitiesParameterEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.parameters.generators.IntegerRangeParameterEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2DParameterEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameterEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.parameters.patterns.StringPatternExtractionParameterEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.parameters.predicates.DoublePredicateParameterEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.parameters.predicates.PathPredicateParameterEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.parameters.predicates.StringOrDoublePredicateParameterEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.parameters.predicates.StringPredicateParameterEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.BooleanParameterEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DynamicEnumParameterEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DynamicSetParameterEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.EnumParameterEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.FileParameterEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.FilePathParameterEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.NumberParameterEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.PathListParameterEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.StringOrDoubleParameterEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.StringParameterEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.parameters.roi.AnchorParameterEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.parameters.roi.IntModificationParameterEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.parameters.roi.MarginParameterEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.parameters.roi.RectangleParameterEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.parameters.scripts.LargeScriptParameterEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.parameters.scripts.ScriptParameterEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTableEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.parameters.util.JIPipeAuthorMetadataParameterEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.parameters.util.JIPipeParameterCollectionParameterEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.plots.parameters.UIPlotDataSeriesColumnEnumParameterEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnGeneratorParameterEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.tables.parameters.ResultsTableDataParameterEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.tables.parameters.TableColumnSourceParameterEditorUI

reload() - Method in class org.hkijena.jipipe.JIPipeDefaultRegistry

Clears all registries and reloads them

reload() - Method in class org.hkijena.jipipe.ui.extensions.JIPipePluginManagerUIPanel

Reloads the UI

reload() - Method in class org.hkijena.jipipe.ui.parameters.JIPipeParameterEditorUI

Reloads the value from the stored parameter

ReloadableValidityChecker - Class in org.hkijena.jipipe.ui.components

Panel that encapsulates a JIPipeValidityReportUI and an JIPipeValidatable.

ReloadableValidityChecker(JIPipeValidatable) - Constructor for class org.hkijena.jipipe.ui.components.ReloadableValidityChecker

ReloadableValidityChecker(JIPipeValidatable, MarkdownDocument) - Constructor for class org.hkijena.jipipe.ui.components.ReloadableValidityChecker

reloadButtonStatus() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeDataSlotUI

Is called when the button's visual feedback should be updated

reloadButtonStatus() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeHorizontalDataSlotUI

reloadButtonStatus() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeVerticalDataSlotUI

reloadEntries() - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotSeriesListEditorUI

Reloads entries in this panel

reloadForm() - Method in class org.hkijena.jipipe.ui.parameters.ParameterPanel

Reloads the form.

reloadList() - Method in class org.hkijena.jipipe.ui.grapheditor.settings.JIPipeSlotEditorUI

Reloads the list

reloadList() - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotAvailableDataManagerUI

Reloads the list of data sources

reloadMenuBar() - Method in class org.hkijena.jipipe.ui.compartments.JIPipeCompartmentGraphUI

reloadMenuBar() - Method in class org.hkijena.jipipe.ui.extensionbuilder.JIPipeJsonExtensionGraphUI

Reloads the menu bar

reloadMenuBar() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCompartmentUI

reloadMenuBar() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

Reloads the menu bar

reloadName() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeDataSlotUI

Is called when the name parameter was changed

reloadName() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeHorizontalDataSlotUI

reloadName() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeVerticalDataSlotUI

reloadPopupMenu() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeDataSlotUI

Reloads the "Assign" popup menu

reloadSlotUI() - Method in class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmFinderAlgorithmUI

Reloads the slots

REMOVE_MASK_QUALIFIER - Static variable in class org.hkijena.jipipe.extensions.imagejalgorithms.ImageJAlgorithmsExtension

Conversion rules from mask data types to their respective 8-bit types

removeActionListener(ActionListener) - Method in class org.hkijena.jipipe.ui.components.PathEditor

removeAlgorithm(JsonNodeInfo) - Method in class org.hkijena.jipipe.JIPipeJsonExtension

Removes an algorithm

removeAllAnnotationsFromData(String) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

Removes an annotation column from the data

RemoveAnnotationByType - Class in org.hkijena.jipipe.extensions.annotation.algorithms

Removes a specified annotation

RemoveAnnotationByType(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.RemoveAnnotationByType

RemoveAnnotationByType(RemoveAnnotationByType) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.RemoveAnnotationByType

Copies the algorithm

RemoveAnnotationByValue - Class in org.hkijena.jipipe.extensions.annotation.algorithms

Removes a specified annotation

RemoveAnnotationByValue(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.RemoveAnnotationByValue

RemoveAnnotationByValue(RemoveAnnotationByValue) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.RemoveAnnotationByValue

Copies the algorithm

RemoveBorderRoisAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

Wrapper around RoiManager

RemoveBorderRoisAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RemoveBorderRoisAlgorithm

Instantiates a new node type.

RemoveBorderRoisAlgorithm(RemoveBorderRoisAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RemoveBorderRoisAlgorithm

Instantiates a new node type.

removeColumn(int) - Method in class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2D

Removes a column

removeColumn(int) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable

Removes the specified column

RemoveColumnAlgorithm - Class in org.hkijena.jipipe.extensions.tables.algorithms

Algorithm that removes columns

RemoveColumnAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.RemoveColumnAlgorithm

Creates a new instance

RemoveColumnAlgorithm(RemoveColumnAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.RemoveColumnAlgorithm

Creates a copy

removeColumnAt(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Removes the column with the specified index

removeColumns(Set<String>) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Removes the columns with given headings

removeCompartment(JIPipeProjectCompartment) - Method in class org.hkijena.jipipe.api.JIPipeProject

Removes a compartment

removeCompartment(String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Removes a whole compartment from the graph.

removeContent(GraphNodeParameterReference) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceGroup

Adds a new element into the group

removeData(List<TableColumn>) - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotBuilderUI

Removes the data

removeFromSelection(JIPipeNodeUI) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

Removes an algorithm from the selection

removeFromSelection(JIPipeNodeUI) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

Removes an algorithm from the selection

removeGlobalAnnotation(String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeDataBatch

Removes an annotation of provided type

removeGlobalAnnotation(String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch

Removes an annotation of provided type

removeGroup(GraphNodeParameterReferenceGroup) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameters

Removes the group

removeHTMLRoot(String) - Static method in class org.hkijena.jipipe.utils.StringUtils

Removes the HTML root from HTML

removeInputSlot(String, boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

Removes the slot with given name

removeInputSlot(String, boolean) - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration

removeInputSlot(String, boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeIOSlotConfiguration

removeLastRow() - Method in class org.hkijena.jipipe.ui.components.FormPanel

Removes the last row.

RemoveLUTAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut

RemoveLUTAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.RemoveLUTAlgorithm

RemoveLUTAlgorithm(RemoveLUTAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.RemoveLUTAlgorithm

RemoveNaNColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting

Sets NaN values to zero

RemoveNaNColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.RemoveNaNColumnOperation

RemoveNaNFilter2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math

Wrapper around RankFilters

RemoveNaNFilter2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.RemoveNaNFilter2DAlgorithm

Instantiates a new node type.

RemoveNaNFilter2DAlgorithm(RemoveNaNFilter2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.RemoveNaNFilter2DAlgorithm

Instantiates a new node type.

removeNode(JIPipeGraphNode, boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Removes an algorithm.

RemoveNodeGraphHistorySnapshot - Class in org.hkijena.jipipe.api.history

RemoveNodeGraphHistorySnapshot(JIPipeGraph, Set<JIPipeGraphNode>) - Constructor for class org.hkijena.jipipe.api.history.RemoveNodeGraphHistorySnapshot

removeNodes(Set<JIPipeGraphNode>, boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Removes multiple nodes at once

RemoveOutliersFilter2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise

Wrapper around RankFilters

RemoveOutliersFilter2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.RemoveOutliersFilter2DAlgorithm

Instantiates a new node type.

RemoveOutliersFilter2DAlgorithm(RemoveOutliersFilter2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.RemoveOutliersFilter2DAlgorithm

Instantiates a new node type.

RemoveOutliersFilter2DAlgorithm.Mode - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise

The two different modes of this filter

removeOutputSlot(String, boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

Removes the slot with given name

removeOutputSlot(String, boolean) - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration

removeOutputSlot(String, boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeIOSlotConfiguration

removeParameter(String) - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection

Removes a parameter

removeRow(int) - Method in class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2D

Removes a row

removeRow(int) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable

Removes the row with the specified index

removeSeries(PlotDataSeries) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData

Removes a series

removeSeries(JIPipePlotSeriesBuilder) - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotBuilderUI

Removes a series from the series builder

removeSnapshot(JIPipeAlgorithmGraphHistorySnapshot) - Method in class org.hkijena.jipipe.api.history.JIPipeGraphHistory

Removes a snapshot.

removeTableModelListener(TableModelListener) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

removeTableModelListener(TableModelListener) - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable

removeTableModelListener(TableModelListener) - Method in class org.hkijena.jipipe.api.data.JIPipeMergedDataSlotTable

removeTableModelListener(TableModelListener) - Method in class org.hkijena.jipipe.api.data.JIPipeMergedExportedDataTable

removeTableModelListener(TableModelListener) - Method in class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2D

removeTableModelListener(TableModelListener) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable

removeTableModelListener(TableModelListener) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

removeTableModelListener(TableModelListener) - Method in class org.hkijena.jipipe.ui.batchassistant.DataSlotTableUI.WrapperTableModel

removeTableModelListener(TableModelListener) - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheDataSlotTableUI.WrapperTableModel

removeUpdate(DocumentEvent) - Method in class org.hkijena.jipipe.ui.components.DocumentChangeListener

removeUpdateSite(UpdateSite) - Method in class org.hkijena.jipipe.ui.ijupdater.JIPipeImageJPluginManager

RenameByString - Class in org.hkijena.jipipe.extensions.filesystem.algorithms

Applies subfolder navigation to each input folder

RenameByString(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.RenameByString

RenameByString(RenameByString) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.RenameByString

Copies the algorithm

renameColumn(String, String) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Renames a column

RenameColumnsAlgorithm - Class in org.hkijena.jipipe.extensions.tables.algorithms

Algorithm that removes columns

RenameColumnsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.RenameColumnsAlgorithm

Creates a new instance

RenameColumnsAlgorithm(RenameColumnsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.RenameColumnsAlgorithm

Creates a copy

renameCompartment(String, String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Renames a compartment

renamedCopy(String) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo

RenameTableColumnsAlgorithm - Class in org.hkijena.jipipe.extensions.tables.algorithms

Algorithm that removes columns

RenameTableColumnsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.RenameTableColumnsAlgorithm

Creates a new instance

RenameTableColumnsAlgorithm(RenameTableColumnsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.RenameTableColumnsAlgorithm

Creates a copy

render(JIPipeProjectWorkbench, JIPipeDataSlot, JIPipeExportedDataTable.Row) - Method in class org.hkijena.jipipe.extensions.filesystem.resultanalysis.FilesystemDataSlotPreviewUI

render(JIPipeProjectWorkbench, JIPipeDataSlot, JIPipeExportedDataTable.Row) - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeAsyncResultDataPlotPreviewUI

render(JIPipeProjectWorkbench, JIPipeDataSlot, JIPipeExportedDataTable.Row) - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeDefaultResultDataSlotPreviewUI

render(JIPipeProjectWorkbench, JIPipeDataSlot, JIPipeExportedDataTable.Row) - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultDataSlotPreviewUI

Renders the data slot row

Renderer() - Constructor for class org.hkijena.jipipe.ui.components.JIPipeDataTypePicker.Renderer

Creates a new renderer

Renderer() - Constructor for class org.hkijena.jipipe.ui.components.JIPipeNodeInfoPicker.Renderer

Creates a new renderer

Renderer() - Constructor for class org.hkijena.jipipe.ui.components.ParameterTreeUI.Renderer

Creates a new instance

renderGenerationTime() - Method in class org.hkijena.jipipe.api.JIPipeProjectCache.State

Formats the generation time

renderIcon(String) - Method in class org.hkijena.jipipe.extensions.parameters.enums.DynamicCategoryEnumParameter

renderIcon(T) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DynamicEnumParameter

Function that renders the icon.

renderIcon(T) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DynamicSetParameter

Function that renders the icon.

renderIcon(JIPipeProjectTemplate) - Method in class org.hkijena.jipipe.extensions.settings.ProjectsSettings.ProjectTemplateEnum

renderIcon(Object) - Method in class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnConversionParameter

renderIcon(Object) - Method in class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnIntegrationParameter

renderInputName() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameter

renderInputName() - Method in class org.hkijena.jipipe.extensions.tables.parameters.processors.ConvertingTableColumnProcessorParameter

renderInputName() - Method in class org.hkijena.jipipe.extensions.tables.parameters.processors.IntegratingTableColumnProcessorParameter

renderInputSlots() - Method in class org.hkijena.jipipe.api.grouping.GraphWrapperAlgorithmInput

renderInputSlots() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Controls whether to render input slots.

renderLabel(Measurement) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.ImageStatisticsSetParameter

renderLabel(String) - Method in class org.hkijena.jipipe.extensions.parameters.enums.DynamicCategoryEnumParameter

renderLabel(T) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DynamicEnumParameter

Function that renders the label.

renderLabel(T) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DynamicSetParameter

Function that renders the label.

renderLabel(JIPipeProjectTemplate) - Method in class org.hkijena.jipipe.extensions.settings.ProjectsSettings.ProjectTemplateEnum

renderLabel(Object) - Method in class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnConversionParameter

renderLabel(Object) - Method in class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnIntegrationParameter

renderOutputName() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameter

renderOutputName() - Method in class org.hkijena.jipipe.extensions.tables.parameters.processors.ConvertingTableColumnProcessorParameter

renderOutputName() - Method in class org.hkijena.jipipe.extensions.tables.parameters.processors.IntegratingTableColumnProcessorParameter

renderOutputSlots() - Method in class org.hkijena.jipipe.api.grouping.GraphWrapperAlgorithmOutput

renderOutputSlots() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Controls whether to render output slots.

renderParameterName() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameter

renderParameterName() - Method in class org.hkijena.jipipe.extensions.tables.parameters.processors.ConvertingTableColumnProcessorParameter

renderParameterName() - Method in class org.hkijena.jipipe.extensions.tables.parameters.processors.IntegratingTableColumnProcessorParameter

renderTooltip(T) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DynamicEnumParameter

Function that renders the tooltip.

renderTooltip(T) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DynamicSetParameter

Function that renders the tooltip.

renderTooltip(Object) - Method in class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnConversionParameter

renderTooltip(Object) - Method in class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnIntegrationParameter

ReorderDimensionsAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions

Algorithm that reorders Hyperstack dimensions

ReorderDimensionsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.ReorderDimensionsAlgorithm

ReorderDimensionsAlgorithm(ReorderDimensionsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.ReorderDimensionsAlgorithm

repairGraph() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Repairs the graph by removing old nodes and adding missing ones

replaceCompartmentOutput(JIPipeCompartmentOutput) - Static method in class org.hkijena.jipipe.api.compartments.algorithms.IOInterfaceAlgorithm

Replaces a JIPipeCompartmentOutput by an equivalent IOInterfaceAlgorithm

replaceWith(JIPipeGraph) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Replaces all contents with the ones in the other graph Does not apply copying!

report(JIPipeValidityReport.Response, JIPipeValidityReport.Message) - Method in class org.hkijena.jipipe.api.JIPipeValidityReport

Reports a response

report(JIPipeValidatable) - Method in class org.hkijena.jipipe.api.JIPipeValidityReport

Passes the report to another JIPipeValidatable

report(boolean, JIPipeValidityReport.Message) - Method in class org.hkijena.jipipe.api.JIPipeValidityReport

Reports validity or invalidity

reportIsInvalid(JIPipeValidityReport.Message) - Method in class org.hkijena.jipipe.api.JIPipeValidityReport

Reports that this report is invalid

reportIsInvalid(String, String, String, Object) - Method in class org.hkijena.jipipe.api.JIPipeValidityReport

Reports that this report is invalid

reportIsValid() - Method in class org.hkijena.jipipe.api.JIPipeValidityReport

Report that is report is valid

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.api.compartments.algorithms.IOInterfaceAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.api.compartments.algorithms.JIPipeProjectCompartment

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.api.compat.SingleImageJAlgorithmRun

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.api.grouping.GraphWrapperAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.api.grouping.NodeGroup

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameters

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.api.JIPipeProject

reportValidity(JIPipeValidityReport, JIPipeGraphNode) - Method in class org.hkijena.jipipe.api.JIPipeProject

Reports the validity for the target node and its dependencies

reportValidity(JIPipeValidityReport) - Method in interface org.hkijena.jipipe.api.JIPipeValidatable

Generates a validity report

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

reportValidity(JIPipeValidityReport, JIPipeGraphNode) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Reports the validity for the target node and its dependencies

reportValidity(JIPipeValidityReport, JIPipeGraphNode, Set<JIPipeGraphNode>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Reports the validity for the target node and its dependencies

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.api.nodes.JIPipeSimpleIteratingAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.api.registries.JIPipeDefaultNodeRegistrationTask

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.api.registries.JIPipeNodeRegistry

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBench

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateAll

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateWithDataString

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.ConvertToAnnotationTable

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.ExtractAndReplaceAnnotation

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.MergeDataSlots

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.ModifyAnnotationScript

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.RemoveAnnotationByType

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.RemoveAnnotationByValue

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.SplitByAnnotation

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.SplitByAnnotationScript

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.annotation.datasources.AnnotationTableFromFile

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelIterating

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelSimpleIterating

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.AnnotationTableToPaths

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.AnnotationToPath

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ConcatenatePaths

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.CopyPath

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ExtractFileName

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ExtractParent

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.FilterPaths

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ListFiles

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ListSubfolders

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.RelativizePaths

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.SimpleFileAnnotationGenerator

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.SimpleFolderAnnotationGenerator

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.SimplePathAnnotationGenerator

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FileDataSource

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FileListDataSource

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FolderDataSource

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FolderListDataSource

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background.RollingBallBackgroundEstimator2DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary.DistanceTransformWatershed2DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary.UltimateErodedPoints2DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary.Voronoi2DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.BoxFilter2DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.BoxFilter3DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.GaussianBlur2DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.GaussianBlur3DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurFilter2DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurFilter3DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurGreyscale8U2DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurRGB2DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.ArrangeChannelsAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.InvertColorsAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.MergeChannelsAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SplitChannelsAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast.CLAHEContrastEnhancer

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast.IlluminationCorrection2DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convolve.Convolve2DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.MontageToStackAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.ReorderDimensionsAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackInverterAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackMergerAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackSplitterAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackTo2DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.ZProjectorAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.edge.SobelEdgeDetectorAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.FrangiVesselnessFeatures

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.LocalMaxima2DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.MeijeringVesselness2DFeatures

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.fft.FFT2DForwardTransform

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.fft.FFT2DInverseTransform

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.fft.FFT2DSwapQuadrants

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.generate.GenerateStructureElementAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.MacroWrapperAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyDistanceTransform2DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyMath2DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyTransform2DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.DivideByMaximumAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.Hessian2DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ImageCalculator2DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMaximumFilter2DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMaximumFilter3DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMinimumFilter2DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMinimumFilter3DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalVarianceFilter2DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalVarianceFilter3DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.RemoveNaNFilter2DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.misc.DataToPreviewAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.Morphology2DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyBinary2DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyFillHoles2DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyInternalGradient2DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyOutline2DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologySkeletonize2DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.AddNoise2DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.DespeckleFilter2DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.RemoveOutliersFilter2DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.AppendRectangularRoiAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ColorRoiByStatisticsAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.DefineRectangularRoiAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExplodeRoiAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterAndMergeRoiByStatisticsScriptAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterRoiByStatisticsAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterRoiByStatisticsScriptAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.GetRoiImageAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.MergeRoiListsAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.OutlineRoiAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ReferencedAppendRectangularRoiAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ReferencedDefineRectangularRoiAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RemoveBorderRoisAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiCalculatorAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiStatisticsAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToMaskAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToRGBAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SetRoiImageAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SortAndExtractRoiByStatisticsAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SplitRoiAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToCircularROIAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToMaskAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToRGBAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnsetRoiImageAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.sharpen.LaplacianSharpen2DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics.GreyscalePixelsGenerator

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics.HistogramGenerator

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.AutoThreshold2DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.BrightSpotsSegmentation2DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HessianSegmentation2DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.InternalGradientSegmentation2DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.ManualThreshold16U2DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.ManualThreshold8U2DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformCrop2DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformFlip2DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformRotate2DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale2DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale3DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePropertiesToAnnotationAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImageTypeConverter

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.ImagePlusFromFile

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.ResultsTableFromFile

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.ROIDataFromFile

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.jsonextensionloader.JsonExtensionLoaderExtension

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.jsonextensionloader.JsonExtensionRegistrationTask

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.multiparameters.datasources.ParametersDataDefinition

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.multiparameters.datasources.ParametersDataTableDefinition

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.parameters.collections.ListParameter

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameter

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.parameters.generators.NumberRangeParameterGenerator

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.parameters.pairs.Pair

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.parameters.patterns.StringPatternExtraction

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.parameters.predicates.DoublePredicate

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.parameters.predicates.PathPredicate

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.parameters.predicates.StringOrDoublePredicate

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.parameters.predicates.StringPredicate

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.parameters.references.JIPipeDataInfoRef

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.parameters.references.JIPipeNodeInfoRef

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.plots.PlotGeneratorAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.python.IteratingPythonScriptAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.python.MergingPythonScriptAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.python.ParameterSlotPythonScriptAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.python.PythonScriptAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.python.SimpleIteratingPythonScriptAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.AddAnnotationColumnsAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ConvertAnnotationTableToAnnotatedTables

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ConvertColumnsAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.FilterTableAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.GenerateColumnAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.IntegrateColumnsAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.MergeColumnsAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.MergeTablesAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ModifyAndMergeTablesScript

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ModifyTablesScript

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.RemoveColumnAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.RenameColumnsAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.RenameTableColumnsAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.SetColumnAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.SortTableAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.SplitTableByColumnsAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.SplitTableIntoColumnsAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.TablesFromScript

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnGeneratorParameter

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.tables.parameters.TableColumnSourceParameter

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.utils.algorithms.ConverterAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.JIPipeDefaultRegistry

reportValidity(JIPipeValidityReport) - Method in interface org.hkijena.jipipe.JIPipeDependency

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.JIPipeJsonExtension

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.JIPipeMutableDependency

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.JIPipeRegistryIssues

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.ui.extensionbuilder.JIPipeJsonExtensionProjectValidation

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotBuilderUI

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotSeriesBuilder

REQUEST_OPEN_CONTEXT_MENU - Static variable in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI

REQUEST_RUN_AND_SHOW_RESULTS - Static variable in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI

REQUEST_UPDATE_CACHE - Static variable in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI

requestCancelRun() - Method in class org.hkijena.jipipe.ui.running.JIPipeRunExecuterUI

Cancels the run

requestFocusInWindow() - Method in class org.hkijena.jipipe.ui.components.SearchBox

resetZoom() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

resolve(JIPipeParameterTree) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReference

Tries to resolve the path

resolve(String) - Method in class org.hkijena.jipipe.api.JIPipeRunnerSubStatus

Adds a new sub-category to the current task.

resolve() - Method in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog

ResolveDependencies - Class in org.hkijena.jipipe.ui.ijupdater

ResolveDependencies(Window, FilesCollection) - Constructor for class org.hkijena.jipipe.ui.ijupdater.ResolveDependencies

ResolveDependencies(Window, FilesCollection, boolean) - Constructor for class org.hkijena.jipipe.ui.ijupdater.ResolveDependencies

RESOURCE_BASE_PATH - Static variable in class org.hkijena.jipipe.utils.ResourceUtils

ResourceUtils - Class in org.hkijena.jipipe.utils

Functions for resource access

ResourceUtils() - Constructor for class org.hkijena.jipipe.utils.ResourceUtils

restore() - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestbenchSnapshot.AlgorithmBackup

Restores the backup to the input algorithm

restore() - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestbenchSnapshot

Restores the snapshot

restore(JIPipeGraphNode) - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestbenchSnapshot

Restores the snapshot into the target algorithm

restore(JIPipeProjectWorkbench) - Method in class org.hkijena.jipipe.ui.project.JIPipeProjectTabMetadata

restoreParameters(JIPipeGraphNode) - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestbenchSnapshot.AlgorithmBackup

Restores the parameter to a compatible foreign algorithm

restoreStandardTabs(boolean, boolean) - Method in class org.hkijena.jipipe.ui.JIPipeProjectWorkbench

restrictInputSlotCount(int) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder

Restrict the number of input slots

restrictInputTo(Class<? extends JIPipeData>...) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder

Restricts the slot to specified data types

restrictInputTo(Collection<Class<? extends JIPipeData>>) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder

Restricts the slot to specified data types

restrictOutputSlotCount(int) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder

Restrict the number output slots

restrictOutputTo(Class<? extends JIPipeData>...) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder

Restricts the slot to specified data types

restrictOutputTo(Collection<Class<? extends JIPipeData>>) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder

Restricts the slot to specified data types

resultsTable(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.utils.Hough_Circle

ResultsTableData - Class in org.hkijena.jipipe.extensions.tables.datatypes

Data containing a ResultsTable

ResultsTableData() - Constructor for class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Creates a new instance

ResultsTableData(Map<String, TableColumn>) - Constructor for class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Creates a ResultsTableData from a map of column name to column data

ResultsTableData(Collection<TableColumn>) - Constructor for class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Creates a ResultsTableData from a list of columns.

ResultsTableData(Path) - Constructor for class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Loads a results table from a folder containing CSV file

ResultsTableData(ResultsTable) - Constructor for class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Wraps a results table

ResultsTableData(ResultsTableData) - Constructor for class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Creates a copy

ResultsTableData.Index - Class in org.hkijena.jipipe.extensions.tables.datatypes

Points to a cell in the table

ResultsTableData.IntegratingColumnOperationEntry - Class in org.hkijena.jipipe.extensions.tables.datatypes

An entry for obtaining statistics/integrated values

ResultsTableDataImageJAdapter - Class in org.hkijena.jipipe.extensions.imagejdatatypes.compat

Adapter between ResultsTableData and ResultsTable

ResultsTableDataImageJAdapter() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ResultsTableDataImageJAdapter

ResultsTableDataImporterUI - Class in org.hkijena.jipipe.extensions.imagejdatatypes.compat

UI for a ResultsTableDataImageJAdapter

ResultsTableDataImporterUI(ImageJDatatypeImporter) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ResultsTableDataImporterUI

ResultsTableDataList - Class in org.hkijena.jipipe.extensions.tables.parameters.collections

A list of ResultsTableData

ResultsTableDataList() - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.collections.ResultsTableDataList

Creates a new instance

ResultsTableDataList(ResultsTableDataList) - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.collections.ResultsTableDataList

Creates a copy

ResultsTableDataListCellRenderer - Class in org.hkijena.jipipe.ui.components

Renders ResultsTableData

ResultsTableDataListCellRenderer() - Constructor for class org.hkijena.jipipe.ui.components.ResultsTableDataListCellRenderer

Creates new instance

ResultsTableDataParameterEditorUI - Class in org.hkijena.jipipe.extensions.tables.parameters

Editor for ResultsTableData

ResultsTableDataParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.ResultsTableDataParameterEditorUI

Creates new instance

ResultsTableDataPreviewUI - Class in org.hkijena.jipipe.extensions.tables

ResultsTableDataPreviewUI(JTable) - Constructor for class org.hkijena.jipipe.extensions.tables.ResultsTableDataPreviewUI

Creates a new renderer

ResultsTableDataSlotRowUI - Class in org.hkijena.jipipe.extensions.tables

Results UI for ResultsTableData

ResultsTableDataSlotRowUI(JIPipeProjectWorkbench, JIPipeDataSlot, JIPipeExportedDataTable.Row) - Constructor for class org.hkijena.jipipe.extensions.tables.ResultsTableDataSlotRowUI

ResultsTableFromFile - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datasources

Imports ResultsTableData from a file

ResultsTableFromFile(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.ResultsTableFromFile

ResultsTableFromFile(ResultsTableFromFile) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.ResultsTableFromFile

Copies the algorithm

ResultsTableFromGUI - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io

Imports ImagePlusData from the GUI

ResultsTableFromGUI(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ResultsTableFromGUI

ResultsTableFromGUI(ResultsTableFromGUI) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ResultsTableFromGUI

ResultsTableToGUI - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io

Imports ImagePlusData from the GUI

ResultsTableToGUI(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ResultsTableToGUI

ResultsTableToGUI(ResultsTableToGUI) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ResultsTableToGUI

ROI_PROCESSOR_DESCRIPTION - Static variable in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ImageRoiProcessorAlgorithm

RoiCalculatorAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

Wrapper around RoiManager

RoiCalculatorAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiCalculatorAlgorithm

Instantiates a new node type.

RoiCalculatorAlgorithm(RoiCalculatorAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiCalculatorAlgorithm

Instantiates a new node type.

ROIDataFromFile - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datasources

Loads ROI data from a file via IJ.openFile()

ROIDataFromFile(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.ROIDataFromFile

ROIDataFromFile(ROIDataFromFile) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.ROIDataFromFile

Copies the algorithm

ROIDataImageJAdapter - Class in org.hkijena.jipipe.extensions.imagejdatatypes.compat

Adapter between RoiManager and ROIListData

ROIDataImageJAdapter() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ROIDataImageJAdapter

ROIDataImporterUI - Class in org.hkijena.jipipe.extensions.imagejdatatypes.compat

Importer around ROIDataImageJAdapter

ROIDataImporterUI(ImageJDatatypeImporter) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ROIDataImporterUI

ROIDataPreviewUI - Class in org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis

ROIDataPreviewUI(JTable) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ROIDataPreviewUI

Creates a new renderer

ROIDataSlotRowUI - Class in org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis

Result UI for ROIListData

ROIDataSlotRowUI(JIPipeProjectWorkbench, JIPipeDataSlot, JIPipeExportedDataTable.Row) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ROIDataSlotRowUI

ROIFromGUI - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io

Imports ImagePlusData from the GUI

ROIFromGUI(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ROIFromGUI

ROIFromGUI(ROIFromGUI) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ROIFromGUI

ROIHandler - Class in org.hkijena.jipipe.extensions.imagejdatatypes.util

Copy of ROIHandler to

ROIHandler() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.util.ROIHandler

ROIListData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes

Contains Roi

ROIListData() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData

Creates an empty set of ROI

ROIListData(Path) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData

Loads Roi from a path that contains a zip/roi file

ROIListData(List<Roi>) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData

Creates a deep copy

ROIListData(RoiManager) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData

Initializes from a RoiManager

RoiNodeTypeCategory - Class in org.hkijena.jipipe.api.nodes.categories

RoiNodeTypeCategory() - Constructor for class org.hkijena.jipipe.api.nodes.categories.RoiNodeTypeCategory

RoiOutline - Enum in org.hkijena.jipipe.extensions.imagejdatatypes.util

Available ways to address the shape of a Roi

RoiStatisticsAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

Wrapper around RoiManager

RoiStatisticsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiStatisticsAlgorithm

Instantiates a new node type.

RoiStatisticsAlgorithm(RoiStatisticsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiStatisticsAlgorithm

Instantiates a new node type.

ROIToGUI - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io

Imports ImagePlusData from the GUI

ROIToGUI(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ROIToGUI

ROIToGUI(ROIToGUI) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ROIToGUI

RoiToMaskAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

Wrapper around RoiManager

RoiToMaskAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToMaskAlgorithm

Instantiates a new node type.

RoiToMaskAlgorithm(RoiToMaskAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToMaskAlgorithm

Instantiates a new node type.

RoiToRGBAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

Wrapper around RoiManager

RoiToRGBAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToRGBAlgorithm

Instantiates a new node type.

RoiToRGBAlgorithm(RoiToRGBAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToRGBAlgorithm

Instantiates a new node type.

RollingBallBackgroundEstimator2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background

Wrapper around RankFilters

RollingBallBackgroundEstimator2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background.RollingBallBackgroundEstimator2DAlgorithm

Instantiates a new node type.

RollingBallBackgroundEstimator2DAlgorithm(RollingBallBackgroundEstimator2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background.RollingBallBackgroundEstimator2DAlgorithm

Instantiates a new node type.

RollingBallBackgroundEstimator2DAlgorithm.BackgroundType - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background

Available background types

RollingBallBackgroundEstimator2DAlgorithm.Method - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background

Available methods

rootPanel - Variable in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog

rotateTabRuns(int, int) - Method in class org.hkijena.jipipe.utils.CustomTabbedPaneUI.TabbedPaneLayout

RoundedLineBorder - Class in org.hkijena.jipipe.utils

Rounded line border that actually works https://stackoverflow.com/questions/52759203/rounded-lineborder-not-all-corners-are-rounded

RoundedLineBorder(Paint, int, int) - Constructor for class org.hkijena.jipipe.utils.RoundedLineBorder

RoundedLineBorder(Paint, int, int, boolean) - Constructor for class org.hkijena.jipipe.utils.RoundedLineBorder

Row() - Constructor for class org.hkijena.jipipe.api.data.JIPipeExportedDataTable.Row

Creates new instance

row - Variable in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData.Index

RowIndexTableColumn - Class in org.hkijena.jipipe.extensions.tables.datatypes

Generates numbers from 0 to row count

RowIndexTableColumn() - Constructor for class org.hkijena.jipipe.extensions.tables.datatypes.RowIndexTableColumn

rowToFile - Variable in class org.hkijena.jipipe.ui.ijupdater.FileTableModel

run(JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.api.compartments.algorithms.IOInterfaceAlgorithm

run(JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.api.compartments.algorithms.JIPipeProjectCompartment

run(JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.api.grouping.GraphWrapperAlgorithm

run(Consumer<JIPipeRunnerStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.api.JIPipeGraphRunner

run(Consumer<JIPipeRunnerStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.api.JIPipeRun

run(Consumer<JIPipeRunnerStatus>, Supplier<Boolean>) - Method in interface org.hkijena.jipipe.api.JIPipeRunnable

Runs the runnable

run(JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

run(JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Runs the workload

run(JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

run(Consumer<JIPipeRunnerStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBench

run(JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.MergeDataSlots

run(JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.ModifyAnnotationScript

run(JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.SplitByAnnotation

run(JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.SplitByAnnotationScript

run(JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ExportDataByParameter

run(JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FileDataSource

run(JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FileListDataSource

run(JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FolderDataSource

run(JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FolderListDataSource

run(JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.OutputFolderDataSource

run(JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ColorRoiByStatisticsAlgorithm

run(JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.DefineRectangularRoiAlgorithm

run(JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterAndMergeRoiByStatisticsScriptAlgorithm

run(JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterRoiByStatisticsAlgorithm

run(JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterRoiByStatisticsScriptAlgorithm

run(JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SortAndExtractRoiByStatisticsAlgorithm

run(JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImageTypeConverter

run(JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterAlgorithm

run(JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.multiparameters.datasources.ParametersDataDefinition

run(JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.multiparameters.datasources.ParametersDataTableDefinition

run(JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.plots.PlotGeneratorAlgorithm

run(JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.python.PythonScriptAlgorithm

run(JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.DefineTablesAlgorithm

run(JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ModifyAndMergeTablesScript

run(JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ModifyTablesScript

run(JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.TablesFromScript

run() - Method in class org.hkijena.jipipe.JIPipeGUICommand

run() - Method in class org.hkijena.jipipe.JIPipeRunAlgorithmCommand

run() - Method in class org.hkijena.jipipe.JIPipeRunCommand

run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.AlgorithmGraphCopyNodeUIContextAction

run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.AlgorithmGraphCutNodeUIContextAction

run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.AlgorithmGraphPasteNodeUIContextAction

run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.GraphCompartmentCopyNodeUIContextAction

run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.GraphCompartmentCutNodeUIContextAction

run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.GraphCompartmentPasteNodeUIContextAction

run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.CollapseIOInterfaceNodeUIContextAction

run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DeleteCompartmentUIContextAction

run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DeleteNodeUIContextAction

run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisableNodeUIContextAction

run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisablePassThroughNodeUIContextAction

run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisableSaveOutputsNodeUIContextAction

run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnableNodeUIContextAction

run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnablePassThroughNodeUIContextAction

run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnableSaveOutputsNodeUIContextAction

run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportCompartmentAsJsonNodeUIContextAction

run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportCompartmentToNodeUIContextAction

run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportNodeUIContextAction

run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.GroupNodeUIContextAction

run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.InvertSelectionNodeUIContextAction

run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.IsolateNodesUIContextAction

run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.JsonAlgorithmToGroupNodeUIContextAction

run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in interface org.hkijena.jipipe.ui.grapheditor.contextmenu.NodeUIContextAction

Runs the workload

run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.RunAndShowResultsNodeUIContextAction

run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.SelectAllNodeUIContextAction

run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.SelectAndMoveNodeHereNodeUIContextAction

run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.UpdateCacheNodeUIContextAction

run(Consumer<JIPipeRunnerStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.ui.ijupdater.ActivateUpdateSiteRun

run(Consumer<JIPipeRunnerStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.ui.ijupdater.ApplyRun

run(Consumer<JIPipeRunnerStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.ui.ijupdater.RefreshRepositoryRun

RunAndShowResultsNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu

RunAndShowResultsNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.RunAndShowResultsNodeUIContextAction

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm

Runs code on one data row

runIteration(JIPipeMergingDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm

Runs code on one data row

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeSimpleIteratingAlgorithm

Runs code on one data row

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateAll

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateWithAnnotationTable

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateWithDataString

runIteration(JIPipeMergingDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.ConvertToAnnotationTable

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.ExtractAndReplaceAnnotation

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.MergeAnnotations

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.ModifyAnnotationScript

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.RemoveAnnotationByType

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.RemoveAnnotationByValue

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.SplitByAnnotationScript

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.annotation.datasources.AnnotationTableFromFile

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Absolute

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AbsoluteDifference

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AddImageAndScalar

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AddImages

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AddImagesWeighted

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AdjacencyMatrixToTouchMatrix

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AffineTransform2d

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AffineTransform3d

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ApplyVectorField2d

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ApplyVectorField3d

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ArgMaximumZProjection

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AutomaticThreshold

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AverageDistanceOfNClosestPoints

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AverageDistanceOfNFarOffPoints

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AverageDistanceOfTouchingNeighbors

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BinaryAnd

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BinaryEdgeDetection

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BinaryFillHoles

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BinaryNot

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BinaryOr

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BinarySubtract

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BinaryXOr

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BottomHatBox

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BottomHatSphere

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CentroidsOfLabels

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CloseIndexGapsInLabelMap

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ClosingBox

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ClosingDiamond

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CombineHorizontally

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CombineVertically

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ConcatenateStacks

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Convolve

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Copy

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CopySlice

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountNonZeroPixels2dSphere

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountNonZeroPixelsSliceBySliceSphere

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountNonZeroVoxels3dSphere

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountTouchingNeighbors

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Crop2d

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Crop3d

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DepthColorProjection

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DetectLabelEdges

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DetectMaximaSliceBySliceBox

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DetectMinimaSliceBySliceBox

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian2d

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian3d

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DilateBox

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DilateBoxSliceBySlice

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DilateSphere

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DilateSphereSliceBySlice

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DistanceMap

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DivideImages

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DownsampleSliceBySliceHalfMedian

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2EntropyBox

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Equal

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2EqualConstant

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2EqualizeMeanIntensitiesOfSlices

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ErodeBox

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ErodeBoxSliceBySlice

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ErodeSphere

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ErodeSphereSliceBySlice

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabels

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsOnEdges

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsOnSurface

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsSubSurface

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsWithValuesOutOfRange

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsWithValuesWithinRange

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelIterating

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelSimpleIterating

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Exponential

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExtendLabelingViaVoronoi

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2FloodFillDiamond

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GaussianBlur2d

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GaussianBlur3d

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GenerateBinaryOverlapMatrix

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GenerateDistanceMatrix

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GenerateJaccardIndexMatrix

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GenerateParametricImage

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GenerateParametricImageFromResultsTableColumn

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GenerateTouchCountMatrix

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GenerateTouchMatrix

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GetJaccardIndex

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GetMeanSquaredError

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GetSorensenDiceCoefficient

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GradientX

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GradientY

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GradientZ

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Greater

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GreaterConstant

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GreaterOrEqual

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GreaterOrEqualConstant

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Histogram

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ImageToStack

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Invert

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2JaccardIndex

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LabelCentroidsToPointList

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LabelledSpotsToPointList

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LabelSpots

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LabelToMask

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LabelVoronoiOctagon

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LaplaceBox

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LaplaceDiamond

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LocalThreshold

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Logarithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mask

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaskLabel

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaskStackWithPlane

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum2dBox

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum2dSphere

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum3dBox

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum3dSphere

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumImageAndScalar

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumImages

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumOctagon

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumOfMaskedPixels

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumOfTouchingNeighbors

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumSliceBySliceSphere

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumXProjection

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumYProjection

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumZProjection

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumZProjectionBounded

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean2dBox

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean2dSphere

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean3dBox

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean3dSphere

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanClosestSpotDistance

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanOfMaskedPixels

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanOfTouchingNeighbors

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanSliceBySliceSphere

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanSquaredError

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanXProjection

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanYProjection

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanZProjection

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanZProjectionBounded

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median2dBox

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median2dSphere

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median3dBox

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median3dSphere

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MedianOfTouchingNeighbors

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MedianSliceBySliceBox

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MedianSliceBySliceSphere

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MedianZProjection

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum2dBox

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum2dSphere

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum3dBox

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum3dSphere

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumDistanceOfTouchingNeighbors

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumImageAndScalar

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumImages

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumOctagon

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumOfMaskedPixels

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumOfTouchingNeighbors

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumSliceBySliceSphere

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumXProjection

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumYProjection

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumZProjection

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumZProjectionBounded

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumZProjectionThresholdedBounded

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MultiplyImageAndCoordinate

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MultiplyImageAndScalar

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MultiplyImages

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MultiplyImageStackWithScalars

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MultiplyMatrix

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MultiplyStackWithPlane

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NClosestDistances

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NClosestPoints

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NeighborsOfNeighbors

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NonzeroMaximumBox

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NonzeroMaximumDiamond

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NonzeroMinimumBox

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NonzeroMinimumDiamond

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NotEqual

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NotEqualConstant

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2OnlyzeroOverwriteMaximumBox

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2OnlyzeroOverwriteMaximumDiamond

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2OpeningBox

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2OpeningDiamond

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Paste2d

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Paste3d

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2PointIndexListToMesh

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2PointlistToLabelledSpots

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Power

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2PowerImages

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2PullToResultsTable

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2PushResultsTable

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ReduceStack

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ReplaceIntensities

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ReplaceIntensity

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ReplacePixelsIfZero

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceBottom

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceLeft

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceRadial

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceRight

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceTop

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2RotateClockwise

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2RotateCounterClockwise

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Scale2d

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Scale3d

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SetNonZeroPixelsToPixelIndex

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ShortestDistances

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Smaller

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SmallerConstant

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SmallerOrEqual

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SmallerOrEqualConstant

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Sobel

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SorensenDiceCoefficient

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SpotsToPointList1

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SquaredDifference

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2StandardDeviationOfMaskedPixels

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2StandardDeviationOfTouchingNeighbors

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2StandardDeviationZProjection

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2StatisticsOfBackgroundAndLabelledPixels

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2StatisticsOfImage

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2StatisticsOfLabelledPixels

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SubtractImageFromScalar

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SubtractImages

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SumImageSliceBySlice

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SumXProjection

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SumYProjection

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SumZProjection

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Threshold

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdDefault

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdHuang

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdIjIsoData

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdIntermodes

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdIsoData

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdLi

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdMaxEntropy

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdMean

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdMinError

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdMinimum

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdMoments

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdOtsu

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdPercentile

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdRenyiEntropy

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdShanbhag

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdTriangle

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdYen

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TopHatBox

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TopHatSphere

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TouchMatrixToAdjacencyMatrix

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TouchMatrixToMesh

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Translate2d

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Translate3d

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TransposeXy

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TransposeXz

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TransposeYz

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2UndefinedToZero

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2VarianceOfMaskedPixels

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2VoronoiLabeling

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2VoronoiOctagon

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Watershed

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2WriteValuesToPositions

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.AnnotationTableToPaths

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.AnnotationToPath

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ConcatenateByParameter

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ConcatenatePaths

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ConvertDataToOutputPath

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.CopyPath

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.CreateDirectory

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ExportData

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ExtractFileName

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ExtractParent

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.FilterPaths

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ListFiles

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ListSubfolders

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.RelativizeByParameter

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.RelativizePaths

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.RenameByString

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.SimpleFileAnnotationGenerator

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.SimpleFolderAnnotationGenerator

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.SimplePathAnnotationGenerator

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.DownloadFilesDataSource

runIteration(JIPipeMergingDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background.RollingBallBackgroundEstimator2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary.DistanceTransformWatershed2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary.UltimateErodedPoints2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary.Voronoi2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.BoxFilter2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.BoxFilter3DAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.GaussianBlur2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.GaussianBlur3DAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurFilter2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurFilter3DAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurGreyscale8U2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurRGB2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.ArrangeChannelsAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.InvertColorsAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.MergeChannelsAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SplitChannelsAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast.CLAHEContrastEnhancer

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast.IlluminationCorrection2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convolve.Convolve2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.MontageToStackAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.ReorderDimensionsAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackInverterAlgorithm

runIteration(JIPipeMergingDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackMergerAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackSplitterAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackTo2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.ZProjectorAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.edge.SobelEdgeDetectorAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.FrangiVesselnessFeatures

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.LocalMaxima2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.MeijeringVesselness2DFeatures

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.fft.FFT2DForwardTransform

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.fft.FFT2DInverseTransform

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.fft.FFT2DSwapQuadrants

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.generate.GenerateStructureElementAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ImagePlusFromGUI

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ImagePlusToGUI

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ResultsTableFromGUI

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ResultsTableToGUI

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ROIFromGUI

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ROIToGUI

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.LUTInverterAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.RemoveLUTAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.SetLUTFromColorAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.MacroWrapperAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyDistanceTransform2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyMath2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyTransform2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.DivideByMaximumAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.Hessian2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ImageCalculator2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMaximumFilter2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMaximumFilter3DAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMinimumFilter2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMinimumFilter3DAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalVarianceFilter2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalVarianceFilter3DAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.RemoveNaNFilter2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.misc.DataToPreviewAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.Morphology2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyBinary2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyFillHoles2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyInternalGradient2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyOutline2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologySkeletonize2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.AddNoise2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.DespeckleFilter2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.RemoveOutliersFilter2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.AppendRectangularRoiAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ColorRoiByStatisticsAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.CropToRoiAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExplodeRoiAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterAndMergeRoiByStatisticsScriptAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterRoiByStatisticsAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterRoiByStatisticsScriptAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.GetRoiImageAlgorithm

runIteration(JIPipeMergingDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.MergeRoiListsAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.OutlineRoiAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ReferencedAppendRectangularRoiAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ReferencedDefineRectangularRoiAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RemoveBorderRoisAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiCalculatorAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiStatisticsAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToMaskAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToRGBAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SetRoiImageAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SortAndExtractRoiByStatisticsAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SplitRoiAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToCircularROIAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToMaskAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToRGBAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnsetRoiImageAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.sharpen.LaplacianSharpen2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics.GreyscalePixelsGenerator

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics.HistogramGenerator

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.AutoThreshold2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.BrightSpotsSegmentation2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.FastHoughSegmentation2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HessianSegmentation2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.InternalGradientSegmentation2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.ManualThreshold16U2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.ManualThreshold8U2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformCrop2DAlgorithm

runIteration(JIPipeMergingDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformEqualCanvasSize2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformExpandCanvas2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformFlip2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformRotate2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale3DAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.BioFormatsExporter

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.DisplayRangeCalibrationAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePropertiesToAnnotationAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.ImagePlusFromFile

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.ResultsTableFromFile

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.ROIDataFromFile

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.python.IteratingPythonScriptAlgorithm

runIteration(JIPipeMergingDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.python.MergingPythonScriptAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.python.SimpleIteratingPythonScriptAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.AddAnnotationColumnsAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ConvertAnnotationTableToAnnotatedTables

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ConvertColumnsAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.FilterTableAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.GenerateColumnAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.IntegrateColumnsAlgorithm

runIteration(JIPipeMergingDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.MergeColumnsAlgorithm

runIteration(JIPipeMergingDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.MergeTablesAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ModifyTablesScript

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.RemoveColumnAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.RenameColumnsAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.RenameTableColumnsAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.SetColumnAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.SortTableAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.SplitTableByColumnsAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.SplitTableIntoColumnsAlgorithm

runIteration(JIPipeDataBatch, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.extensions.utils.algorithms.ConverterAlgorithm

runOnImage(ImagePlus, String, Object...) - Static method in class org.hkijena.jipipe.extensions.imagejalgorithms.utils.ImageJUtils

Runs a command on an ImageJ image

runOnImage(ImagePlus, PlugIn, Object...) - Static method in class org.hkijena.jipipe.extensions.imagejalgorithms.utils.ImageJUtils

Runs a command on a copy of an ImageJ image

runOnNewImage(ImagePlus, String, Object...) - Static method in class org.hkijena.jipipe.extensions.imagejalgorithms.utils.ImageJUtils

Runs a command on a copy of an ImageJ image

runOnNewImage(ImagePlus, PlugIn, Object...) - Static method in class org.hkijena.jipipe.extensions.imagejalgorithms.utils.ImageJUtils

Runs a command on a copy of an ImageJ image

runParameterSet(JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>, List<JIPipeAnnotation>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm

runParameterSet(JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>, List<JIPipeAnnotation>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm

runParameterSet(JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>, List<JIPipeAnnotation>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

Runs a parameter set iteration

runParameterSet(JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>, List<JIPipeAnnotation>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeSimpleIteratingAlgorithm

runParameterSet(JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>, List<JIPipeAnnotation>) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateWithAnnotationTable

runParameterSet(JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>, List<JIPipeAnnotation>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelIterating

runParameterSet(JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>, List<JIPipeAnnotation>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelSimpleIterating

runParameterSet(JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>, List<JIPipeAnnotation>) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.TemporaryFileDataSource

runParameterSet(JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>, List<JIPipeAnnotation>) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.TemporaryFolderDataSource

runParameterSet(JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>, Supplier<Boolean>, List<JIPipeAnnotation>) - Method in class org.hkijena.jipipe.extensions.python.ParameterSlotPythonScriptAlgorithm

runPassThrough() - Method in class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

Runs the pass through.

runPassThrough() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateWithAnnotationTable

runPassThrough() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.MergeAnnotations

runRegistrationTask(JsonExtensionRegistrationTask) - Method in class org.hkijena.jipipe.extensions.jsonextensionloader.JsonExtensionLoaderExtension

Immediately runs a registration task.

runRegistrationTasks() - Method in class org.hkijena.jipipe.api.registries.JIPipeNodeRegistry

Attempts to run registration tasks that have registered dependencies

RunSingleAlgorithmDialog - Class in org.hkijena.jipipe.ui.compat

UI for SingleImageJAlgorithmRun

RunSingleAlgorithmDialog(Context) - Constructor for class org.hkijena.jipipe.ui.compat.RunSingleAlgorithmDialog

runTestBench(boolean, boolean, boolean, boolean, boolean) - Method in class org.hkijena.jipipe.ui.grapheditor.settings.JIPipeSingleAlgorithmSelectionPanelUI

Activates and runs the quick run as automatically as possible.

RuntimeSettings - Class in org.hkijena.jipipe.extensions.settings

Settings related to how algorithms are executed

RuntimeSettings() - Constructor for class org.hkijena.jipipe.extensions.settings.RuntimeSettings

Creates a new instance

RunUIWorkerFinishedEvent - Class in org.hkijena.jipipe.ui.events

Generated when an JIPipeRunWorker finished its work

RunUIWorkerFinishedEvent(JIPipeRunWorker) - Constructor for class org.hkijena.jipipe.ui.events.RunUIWorkerFinishedEvent

RunUIWorkerInterruptedEvent - Class in org.hkijena.jipipe.ui.events

Generated when work of an JIPipeRunWorker is interrupted

RunUIWorkerInterruptedEvent(JIPipeRunWorker, Exception) - Constructor for class org.hkijena.jipipe.ui.events.RunUIWorkerInterruptedEvent

RunUIWorkerProgressEvent - Class in org.hkijena.jipipe.ui.events

Generated when an JIPipeRunWorker reports progress

RunUIWorkerProgressEvent(JIPipeRunWorker, JIPipeRunnerStatus) - Constructor for class org.hkijena.jipipe.ui.events.RunUIWorkerProgressEvent

RunUIWorkerStartedEvent - Class in org.hkijena.jipipe.ui.events

Generated when an JIPipeRunWorker was started

RunUIWorkerStartedEvent(JIPipeRunnable, JIPipeRunWorker) - Constructor for class org.hkijena.jipipe.ui.events.RunUIWorkerStartedEvent

S

save(Path) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

Saves the data to the storage path

save(Path) - Method in class org.hkijena.jipipe.api.registries.JIPipeSettingsRegistry

Saves the settings to the specified file

save() - Method in class org.hkijena.jipipe.api.registries.JIPipeSettingsRegistry

Saves the settings to the default settings file

saveAsCSV(Path) - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable

Saves the table to CSV

saveAsCSV(Path) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Saves the table as CSV

saveAsJson(Path) - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable

Saves the table to JSON

saveDirectory(Component, String, String) - Static method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings

Lets the user choose a directory

saveFile(Component, String, String, FileNameExtensionFilter...) - Static method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings

Lets the user choose a file

savePath(Component, String, String) - Static method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings

Lets the user choose a file or directory

saveProject(Path) - Method in class org.hkijena.jipipe.api.JIPipeProject

Saves the project

saveProject(Path) - Method in class org.hkijena.jipipe.JIPipeJsonExtension

Saves the extension

saveProjectAs(boolean) - Method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWindow

Saves the project

saveProjectAs(boolean) - Method in class org.hkijena.jipipe.ui.JIPipeProjectWindow

Saves the project

saveROIs(MetadataStore, ROIListData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ROIHandler

Save ROIs in the ROI manager to the given MetadataStore.

saveTo(Path, String, boolean) - Method in class org.hkijena.jipipe.api.compartments.datatypes.JIPipeCompartmentOutputData

saveTo(Path, String, boolean) - Method in interface org.hkijena.jipipe.api.data.JIPipeData

Saves the data to a folder

saveTo(Path, String, boolean) - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageData

saveTo(Path, String, boolean) - Method in class org.hkijena.jipipe.extensions.filesystem.dataypes.PathData

saveTo(Path, String, boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ImagePlusData

saveTo(Path, String, boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.OMEImageData

saveTo(Path, String, boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData

saveTo(Path, String, boolean) - Method in class org.hkijena.jipipe.extensions.multiparameters.datatypes.ParametersData

saveTo(Path, String, boolean) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData

saveTo(Path, String, boolean) - Method in class org.hkijena.jipipe.extensions.strings.StringData

saveTo(Path, String, boolean) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.DoubleArrayTableColumn

saveTo(Path, String, boolean) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

saveTo(Path, String, boolean) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.RowIndexTableColumn

saveTo(Path, String, boolean) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.StringArrayTableColumn

saveTo(Path, String, boolean) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ZeroTableColumn

saveTo(Path, String, boolean) - Method in class org.hkijena.jipipe.extensions.tables.TableColumnReference

saveToJson(Path) - Method in class org.hkijena.jipipe.api.compartments.JIPipeExportedCompartment

Saves the exported compartment to JSON

ScatterXYPlotData - Class in org.hkijena.jipipe.extensions.plots.datatypes

Generates a bar category plot

ScatterXYPlotData() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.ScatterXYPlotData

Creates a new instance

ScatterXYPlotData(ScatterXYPlotData) - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.ScatterXYPlotData

Creates a copy

schedule(Runnable) - Method in class org.hkijena.jipipe.api.JIPipeFixedThreadPool

Schedules a runnable

scheduleBatches(List<Runnable>, int) - Method in class org.hkijena.jipipe.api.JIPipeFixedThreadPool

Schedules multiple tasks at once, split into batches.

scheduleRegister(JIPipeNodeRegistrationTask) - Method in class org.hkijena.jipipe.api.registries.JIPipeNodeRegistry

Schedules registration after all dependencies of the registration task are satisfied

scheduleRegisterJsonExtension(Path, JsonNode) - Method in class org.hkijena.jipipe.extensions.jsonextensionloader.JsonExtensionLoaderExtension

Schedules the registration of an extension Invalid JSON data is skipped

ScreenImage - Class in org.hkijena.jipipe.utils

Convenience class to create and optionally save to a file a BufferedImage of an area on the screen.

ScreenImage() - Constructor for class org.hkijena.jipipe.utils.ScreenImage

ScreenImageSVG - Class in org.hkijena.jipipe.utils

Convenience class to create and optionally save to a file a BufferedImage of an area on the screen.

ScreenImageSVG() - Constructor for class org.hkijena.jipipe.utils.ScreenImageSVG

ScreenshotWholeGraphToolPNG - Class in org.hkijena.jipipe.extensions.tools

ScreenshotWholeGraphToolPNG(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.extensions.tools.ScreenshotWholeGraphToolPNG

Creates a new instance

ScreenshotWholeGraphToolSVG - Class in org.hkijena.jipipe.extensions.tools

ScreenshotWholeGraphToolSVG(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.extensions.tools.ScreenshotWholeGraphToolSVG

Creates a new instance

ScriptParameter - Class in org.hkijena.jipipe.extensions.parameters.scripts

A parameter that contains some kind of script

ScriptParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.scripts.ScriptParameter

Creates a new empty code

ScriptParameter(ScriptParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.scripts.ScriptParameter

Copies the code

ScriptParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.scripts

Parameter editor for ScriptParameter

ScriptParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.scripts.ScriptParameterEditorUI

scrollToAlgorithm(JIPipeNodeUI) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

Scrolls to the specified algorithm UI

seal() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder

Seals input and output

sealInput() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder

Seals input

sealOutput() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder

Seals output

SearchBox<T> - Class in org.hkijena.jipipe.ui.components

A JComboBox that implements a search behavior

SearchBox() - Constructor for class org.hkijena.jipipe.ui.components.SearchBox

Creates a new instance

SearchBox.SelectedEvent<T> - Class in org.hkijena.jipipe.ui.components

SearchTextField - Class in org.hkijena.jipipe.ui.components

A JXTextField designed for searching

SearchTextField() - Constructor for class org.hkijena.jipipe.ui.components.SearchTextField

Creates a new instance

SearchTextFieldTableRowFilter - Class in org.hkijena.jipipe.ui.components

Filters string entries via a SearchTextField

SearchTextFieldTableRowFilter(SearchTextField) - Constructor for class org.hkijena.jipipe.ui.components.SearchTextFieldTableRowFilter

SECONDARY1 - Static variable in class org.hkijena.jipipe.utils.ModernMetalTheme

SECONDARY2 - Static variable in class org.hkijena.jipipe.utils.ModernMetalTheme

SECONDARY3 - Static variable in class org.hkijena.jipipe.utils.ModernMetalTheme

selectAll() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

SelectAllNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu

SelectAllNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.SelectAllNodeUIContextAction

SelectAndMoveNodeHereNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu

SelectAndMoveNodeHereNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.SelectAndMoveNodeHereNodeUIContextAction

selectColor - Variable in class org.hkijena.jipipe.utils.CustomTabbedPaneUI

selectDataSlot(JIPipeProjectCache.State, JIPipeDataSlot) - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheTree

Selects a node by state and slot

SelectedDataTypesChangedEvent(JIPipeDataTypePicker) - Constructor for class org.hkijena.jipipe.ui.components.JIPipeDataTypePicker.SelectedDataTypesChangedEvent

SelectedEvent(SearchBox<T>, T) - Constructor for class org.hkijena.jipipe.ui.components.SearchBox.SelectedEvent

SelectedTraitsChangedEvent(JIPipeNodeInfoPicker) - Constructor for class org.hkijena.jipipe.ui.components.JIPipeNodeInfoPicker.SelectedTraitsChangedEvent

selectEnd() - Method in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog

selectHighlight - Variable in class org.hkijena.jipipe.utils.CustomTabbedPaneUI

selectItem(T) - Method in class org.hkijena.jipipe.ui.compendium.JIPipeCompendiumUI

Displays the documentation of the specified algorithm

selectMulti(Component, String, String, PathEditor.IOMode, PathEditor.PathMode) - Static method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings

Generic open method for multiple paths.

selectOnly(JIPipeNodeUI) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

Selects only the specified algorithm

selectOnly(JIPipeNodeUI) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

Selects only the specified algorithm

selectSingle(Component, String, String, PathEditor.IOMode, PathEditor.PathMode) - Static method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings

Generic open/save method for single paths

selectSingletonTab(String) - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane

Re-opens or selects a singleton tab

sendStatusBarText(String) - Method in class org.hkijena.jipipe.ui.compat.RunSingleAlgorithmDialog

sendStatusBarText(String) - Method in class org.hkijena.jipipe.ui.ijupdater.MissingUpdateSiteResolver

sendStatusBarText(String) - Method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWorkbench

Sends a text to the status bar

sendStatusBarText(String) - Method in class org.hkijena.jipipe.ui.JIPipeProjectWorkbench

Sends a text to the status bar

sendStatusBarText(String) - Method in interface org.hkijena.jipipe.ui.JIPipeWorkbench

Sends a text to the status bar

SEPARATOR - Static variable in interface org.hkijena.jipipe.ui.grapheditor.contextmenu.NodeUIContextAction

Indicates that a separator is created

serialize(JIPipeExportedCompartment, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.api.compartments.JIPipeExportedCompartment.Serializer

serialize(SingleImageJAlgorithmRun, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.api.compat.SingleImageJAlgorithmRun.Serializer

serialize(JIPipeDataInfo, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.api.data.JIPipeDataInfo.Serializer

serialize(JIPipeDataSlotInfo, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo.Serializer

serialize(JIPipeSlotConfiguration, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.api.data.JIPipeSlotConfiguration.Serializer

serialize(NodeGroupContents, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.api.grouping.parameters.NodeGroupContents.Serializer

serialize(JIPipeProject, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.api.JIPipeProject.Serializer

serialize(JIPipeGraphNode, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm.StateSerializer

serialize(JIPipeEmptyNodeInfo, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.api.nodes.JIPipeEmptyNodeInfo.Serializer

serialize(JIPipeGraph, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph.Serializer

serialize(JIPipeGraphNode, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode.Serializer

serialize(JIPipeJavaNodeInfo, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.api.nodes.JIPipeJavaNodeInfo.Serializer

serialize(ParametersData, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.extensions.multiparameters.datatypes.ParametersData.Serializer

serialize(ListParameter<?>, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.extensions.parameters.collections.ListParameter.Serializer

serialize(Color, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.extensions.parameters.colors.ColorSerializer

serialize(DynamicCategoryEnumParameter, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.extensions.parameters.enums.DynamicCategoryEnumParameter.Serializer

serialize(FunctionParameter<?, ?, ?>, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameter.Serializer

serialize(IntegerRange, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.extensions.parameters.generators.IntegerRange.Serializer

serialize(Matrix2D<?>, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2D.Serializer

serialize(OptionalParameter<?>, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameter.Serializer

serialize(Pair<?, ?>, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.extensions.parameters.pairs.Pair.Serializer

serialize(DynamicStringEnumParameter, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DynamicStringEnumParameter.Serializer

serialize(JIPipeAlgorithmIconRef, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.extensions.parameters.references.JIPipeAlgorithmIconRef.Serializer

serialize(JIPipeDataInfoRef, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.extensions.parameters.references.JIPipeDataInfoRef.Serializer

serialize(JIPipeNodeInfoRef, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.extensions.parameters.references.JIPipeNodeInfoRef.Serializer

serialize(Rectangle, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.extensions.parameters.roi.RectangleSerializer

serialize(ParameterTable, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable.Serializer

serialize(PlotData, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData.Serializer

serializeParameter(Map.Entry<String, JIPipeParameterAccess>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm.StateSerializer

Returns true if the parameter should be serialized

serializeParametersToJson(JIPipeParameterCollection, JsonGenerator) - Static method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

Serializes parameters to JSON using a generator

serializeParametersToJson(JIPipeParameterCollection, JsonGenerator, Predicate<Map.Entry<String, JIPipeParameterAccess>>) - Static method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

Serializes parameters to JSON using a generator

Serializer() - Constructor for class org.hkijena.jipipe.api.compartments.JIPipeExportedCompartment.Serializer

Serializer() - Constructor for class org.hkijena.jipipe.api.compat.SingleImageJAlgorithmRun.Serializer

Serializer() - Constructor for class org.hkijena.jipipe.api.data.JIPipeDataInfo.Serializer

Serializer() - Constructor for class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo.Serializer

Serializer() - Constructor for class org.hkijena.jipipe.api.data.JIPipeSlotConfiguration.Serializer

Serializer() - Constructor for class org.hkijena.jipipe.api.grouping.parameters.NodeGroupContents.Serializer

Serializer() - Constructor for class org.hkijena.jipipe.api.JIPipeProject.Serializer

Serializer() - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeEmptyNodeInfo.Serializer

Serializer() - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeGraph.Serializer

Serializer() - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeGraphNode.Serializer

Serializer() - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeJavaNodeInfo.Serializer

Serializer() - Constructor for class org.hkijena.jipipe.extensions.multiparameters.datatypes.ParametersData.Serializer

Serializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.collections.ListParameter.Serializer

Serializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.enums.DynamicCategoryEnumParameter.Serializer

Serializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameter.Serializer

Serializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.generators.IntegerRange.Serializer

Serializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2D.Serializer

Serializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameter.Serializer

Serializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.Pair.Serializer

Serializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.DynamicStringEnumParameter.Serializer

Serializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.references.JIPipeAlgorithmIconRef.Serializer

Serializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.references.JIPipeDataInfoRef.Serializer

Serializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.references.JIPipeNodeInfoRef.Serializer

Serializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.table.ParameterTable.Serializer

Serializer() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.PlotData.Serializer

set(T) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccess

set(T) - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess

set(T) - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess

set(T) - Method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterAccess

Sets the parameter value

set(T) - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess

set(U) - Method in class org.hkijena.jipipe.extensions.parameters.collections.ListParameterItemParameterAccess

set(T) - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterInputAccess

set(T) - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterOutputAccess

set(T) - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterParameterAccess

set(U) - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameterContentAccess

set(T) - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterKeyAccess

set(T) - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterValueAccess

set(T) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTableCellAccess

setAcceptedDataType(Class<? extends JIPipeData>) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

Sets the accepted slot type Please note that this method can cause issues when running the graph

setAcceptedDataTypeId(String) - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable

Sets the accepted datatype ID

setActions(List<JIPipeParameterTree.ContextAction>) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node

setAddableAlgorithms(Set<JIPipeNodeInfo>) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

setAddFileExtension(boolean) - Method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings

setAdditionalMetadata(Map<String, Object>) - Method in class org.hkijena.jipipe.api.JIPipeProject

setAffiliations(String) - Method in class org.hkijena.jipipe.api.JIPipeAuthorMetadata

setAfterSlotConfiguration(JIPipeSlotConfiguration) - Method in class org.hkijena.jipipe.api.history.SlotConfigurationHistorySnapshot

setAlgorithmInstance(JIPipeGraphNode) - Method in class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterAlgorithmSlotConfiguration

setAlgorithmsWithExternalInput(Set<JIPipeGraphNode>) - Method in class org.hkijena.jipipe.api.JIPipeGraphRunner

setAllowCache(boolean) - Method in class org.hkijena.jipipe.extensions.settings.RuntimeSettings

setAllowDuplicateDataSets(boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm.DataBatchGenerationSettings

setAllowedInputSlotTypes(Set<Class<? extends JIPipeData>>) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

setAllowedOutputSlotTypes(Set<Class<? extends JIPipeData>>) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

setAllowedTypes(Set<Class<?>>) - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection

Sets allowed parameter types

setAllowedValues(List<T>) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DynamicEnumParameter

setAllowedValues(List<T>) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DynamicSetParameter

setAllowInheritedOutputSlots(boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

Enables/Disables if output slots can inherit from input slots

setAllowSkipAlgorithmsWithoutInput(boolean) - Method in class org.hkijena.jipipe.extensions.settings.RuntimeSettings

setAllowUserModification(boolean) - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection

Enabled/disables if modification by users is allowed

setAlpha(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.MeijeringVesselness2DFeatures

setAnchor(TableToRectangularROIAlgorithm.Anchor) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm

setAnchor(Anchor) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformEqualCanvasSize2DAlgorithm

setAnchor(Anchor) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformExpandCanvas2DAlgorithm

setAnchor(Anchor) - Method in class org.hkijena.jipipe.extensions.parameters.roi.Margin

setAnnotateSlices(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackTo2DAlgorithm

setAnnotateWithChannelIndex(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SplitChannelsAlgorithm

setAnnotateWithSlotName(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SplitChannelsAlgorithm

setAnnotationColumn(StringPredicate) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.AnnotationToPath

setAnnotationColumnChannelIndex(String) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SplitChannelsAlgorithm

setAnnotationColumnSlotName(String) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SplitChannelsAlgorithm

setAnnotationMap(Map<Class<? extends Annotation>, Annotation>) - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess

setAnnotationMergeStrategy(JIPipeAnnotationMergeStrategy) - Method in class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm.DataBatchGenerationSettings

setAnnotationMergeStrategy(JIPipeAnnotationMergeStrategy) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm.DataBatchGenerationSettings

setAnnotationMergeStrategy(JIPipeAnnotationMergeStrategy) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateAll

setAnnotationMergeStrategy(JIPipeAnnotationMergeStrategy) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateWithDataString

setAnnotationMergeStrategy(JIPipeAnnotationMergeStrategy) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.ExtractAndReplaceAnnotation

setAnnotationMergeStrategy(JIPipeAnnotationMergeStrategy) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.SimplePathAnnotationGenerator

setAnnotationPrefix(String) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.AddAnnotationColumnsAlgorithm

setAnnotations(StringAndStringPair.List) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateAll

setAnnotationsFromPython(PyDictionary, Map<String, JIPipeAnnotation>) - Static method in class org.hkijena.jipipe.api.data.JIPipeAnnotation

Sets annotations from a Python dictionary

setAnnotationType(String) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.SplitByAnnotation

setAnnotationType(OptionalStringParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D

setAnnotationType(String) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackSplitterAlgorithm

setAnnotationType(String) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackTo2DAlgorithm

setAnnotationTypes(StringPredicate.List) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.RemoveAnnotationByType

setAppend(boolean) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ConvertColumnsAlgorithm

setAppendDataTypeAsMetadata(boolean) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ExportDataByParameter

setAppendDataTypeMetadataKey(String) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ExportDataByParameter

setAppendDataTypeUsesRealDataType(boolean) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ExportDataByParameter

setAppendDirectoryNameToTarget(boolean) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.CopyPath

setApplyDespeckle(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HessianSegmentation2DAlgorithm

setApplyFirstCLAHE(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.InternalGradientSegmentation2DAlgorithm

setApplyGaussian(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.InternalGradientSegmentation2DAlgorithm

setApplyInternalGradient(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HessianSegmentation2DAlgorithm

setApplyPerChannel(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiCalculatorAlgorithm

setApplyPerChannel(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiStatisticsAlgorithm

setApplyPerFrame(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiCalculatorAlgorithm

setApplyPerFrame(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiStatisticsAlgorithm

setApplyPerSlice(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiCalculatorAlgorithm

setApplyPerSlice(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiStatisticsAlgorithm

setApplyPerSlice(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics.GreyscalePixelsGenerator

setApplyPerSlice(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics.HistogramGenerator

setApplySecondCLAHE(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.InternalGradientSegmentation2DAlgorithm

setArtifactPaint(Paint) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer

Sets the paint used to color the median and average markers and sends a RendererChangeEvent to all registered listeners.

setAskOnDeleteCompartment(boolean) - Method in class org.hkijena.jipipe.extensions.settings.GraphEditorUISettings

setAskOnDeleteNode(boolean) - Method in class org.hkijena.jipipe.extensions.settings.GraphEditorUISettings

setAskOnDeleteParameter(boolean) - Method in class org.hkijena.jipipe.extensions.settings.GraphEditorUISettings

setAttachOnlyNonDefaultParameterAnnotations(boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm.ParameterSlotAlgorithmSettings

setAttachParameterAnnotations(boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm.ParameterSlotAlgorithmSettings

setAuthors(JIPipeAuthorMetadata.List) - Method in class org.hkijena.jipipe.api.JIPipeMetadata

Sets the authors

setAutoCalibrateAfterPulling(boolean) - Method in class org.hkijena.jipipe.extensions.clij2.CLIJSettings

setAutoClamp(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SortAndExtractRoiByStatisticsAlgorithm

setAutoLayout(GraphAutoLayout) - Method in class org.hkijena.jipipe.extensions.settings.GraphEditorUISettings

setAutoScale(boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter

setAvailableParameters(Map<String, JIPipeParameterAccess>) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterCollectionVisibilities

Sets the list of available parameters

setBackgroundColor(Color) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm

setBackgroundColor(Color) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformEqualCanvasSize2DAlgorithm

setBackgroundColor(Color) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformExpandCanvas2DAlgorithm

setBackgroundImage(BufferedImage) - Method in class org.hkijena.jipipe.ui.components.BackgroundPanel

setBackgroundType(RollingBallBackgroundEstimator2DAlgorithm.BackgroundType) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background.RollingBallBackgroundEstimator2DAlgorithm

setBandwidth(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm

setBaseName(String) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.TemporaryFolderDataSource

setBetweenColumnOperation(LogicalOperation) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.FilterTableAlgorithm

setBetweenMeasurementOperation(LogicalOperation) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterRoiByStatisticsAlgorithm

setBinAxisLabel(String) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.HistogramPlotData

setBins(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast.CLAHEContrastEnhancer

setBins(int) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.HistogramPlotData

setBioFormatsCompression(OMETIFFCompression) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesSettings

setBitDepthAnnotation(OptionalStringParameter) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePropertiesToAnnotationAlgorithm

setBlackBackground(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D

setBlockRadius(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast.CLAHEContrastEnhancer

setBlurSigmaX(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GaussianBlur2d

setBlurSigmaX(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GaussianBlur3d

setBlurSigmaY(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GaussianBlur2d

setBlurSigmaY(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GaussianBlur3d

setBlurSigmaZ(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GaussianBlur3d

setBorderColor(Color) - Method in class org.hkijena.jipipe.extensions.parameters.colors.ColorMapIcon

setBorderColor(Color) - Method in class org.hkijena.jipipe.ui.components.ColorIcon

setBorderDefinition(Margin) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RemoveBorderRoisAlgorithm

setBorderWidth(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.MontageToStackAlgorithm

setBorderWidth(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm

setBottom(IntModificationParameter) - Method in class org.hkijena.jipipe.extensions.parameters.roi.Margin

setC(int) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.SliceIndex

setCalibrationMode(CalibrationMode) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.DisplayRangeCalibrationAlgorithm

setCanvas(JIPipeGraphCanvasUI) - Method in interface org.hkijena.jipipe.ui.grapheditor.JIPipeGraphDragAndDropBehavior

Sets the canvas that contains the algorithm nodes

setCanvas(JIPipeGraphCanvasUI) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeStandardDragAndDropBehavior

setCategory(JIPipeNodeTypeCategory) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMutableNodeInfo

Sets the category

setCategoryAxisLabel(String) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CategoryPlotData

setCategoryParameter(DynamicCategoryEnumParameter) - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

setCenterX(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsOnSurface

setCenterX(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsSubSurface

setCenterX(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceRadial

setCenterY(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsOnSurface

setCenterY(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsSubSurface

setCenterY(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceRadial

setCenterZ(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsOnSurface

setCenterZ(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsSubSurface

setChangedGraph(JIPipeGraph) - Method in class org.hkijena.jipipe.api.history.GraphChangedHistorySnapshot

setChannelReordering(IntegerAndIntegerPair.List) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.ArrangeChannelsAlgorithm

setChannelSizeAnnotation(OptionalStringParameter) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePropertiesToAnnotationAlgorithm

setChildren(BiMap<String, JIPipeParameterTree.Node>) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node

setCitation(String) - Method in class org.hkijena.jipipe.api.JIPipeMetadata

Sets the citation

setCode(PythonScript) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.ModifyAnnotationScript

setCode(PythonScript) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.SplitByAnnotationScript

setCode(ImageJMacro) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.MacroWrapperAlgorithm

setCode(PythonScript) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterAndMergeRoiByStatisticsScriptAlgorithm

setCode(PythonScript) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterRoiByStatisticsScriptAlgorithm

setCode(String) - Method in class org.hkijena.jipipe.extensions.parameters.scripts.ScriptParameter

setCode(PythonScript) - Method in class org.hkijena.jipipe.extensions.python.IteratingPythonScriptAlgorithm

setCode(PythonScript) - Method in class org.hkijena.jipipe.extensions.python.MergingPythonScriptAlgorithm

setCode(PythonScript) - Method in class org.hkijena.jipipe.extensions.python.ParameterSlotPythonScriptAlgorithm

setCode(PythonScript) - Method in class org.hkijena.jipipe.extensions.python.PythonScriptAlgorithm

setCode(PythonScript) - Method in class org.hkijena.jipipe.extensions.python.SimpleIteratingPythonScriptAlgorithm

setCode(PythonScript) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ModifyAndMergeTablesScript

setCode(PythonScript) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ModifyTablesScript

setCode(PythonScript) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.TablesFromScript

setCollapsed(boolean) - Method in class org.hkijena.jipipe.extensions.parameters.scripts.ScriptParameter

setCollection(JIPipeParameterCollection) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node

setColor(Color) - Method in class org.hkijena.jipipe.ui.components.MonochromeColorIcon

setColorMap(ColorMap) - Method in class org.hkijena.jipipe.extensions.parameters.colors.ColorMapIcon

setColorMode(OMEColorMode) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter

setColumn(StringPredicate) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.AnnotationTableToPaths

SetColumnAlgorithm - Class in org.hkijena.jipipe.extensions.tables.algorithms

Algorithm that adds or replaces a column by a generated value

SetColumnAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.SetColumnAlgorithm

Creates a new instance

SetColumnAlgorithm(SetColumnAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.SetColumnAlgorithm

Creates a copy

setColumnHeight(TableColumnSourceParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm

setColumnName(String) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GenerateParametricImageFromResultsTableColumn

setColumnRadius(TableColumnSourceParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToCircularROIAlgorithm

setColumns(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.MontageToStackAlgorithm

setColumns(OptionalIntegerParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm

setColumns(TableColumnGeneratorProcessorParameterList) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.GenerateColumnAlgorithm

setColumns(StringAndStringOrDoublePair.List) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.SetColumnAlgorithm

setColumns(StringPredicate.List) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.SplitTableByColumnsAlgorithm

setColumnSource(StringPredicate) - Method in class org.hkijena.jipipe.extensions.tables.parameters.TableColumnSourceParameter

setColumnWidth(TableColumnSourceParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm

setColumnX1(TableColumnSourceParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToCircularROIAlgorithm

setColumnX1(TableColumnSourceParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm

setColumnX2(TableColumnSourceParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm

setColumnY1(TableColumnSourceParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToCircularROIAlgorithm

setColumnY1(TableColumnSourceParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm

setColumnY2(TableColumnSourceParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm

setCompareAbsolute(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.Hessian2DAlgorithm

setCompareAbsolute(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HessianSegmentation2DAlgorithm

setCompartment(String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Sets the compartment the algorithm is location in

setCompartmentInstance(JIPipeProjectCompartment) - Method in class org.hkijena.jipipe.api.history.AddCompartmentGraphHistorySnapshot

setCompartmentInstance(JIPipeProjectCompartment) - Method in class org.hkijena.jipipe.api.history.DeleteCompartmentGraphHistorySnapshot

setCompartmentInstance(JIPipeProjectCompartment) - Method in class org.hkijena.jipipe.api.history.ImportCompartmentGraphHistorySnapshot

setCompression(OMETIFFCompression) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMEExporterSettings

setConcatenate(boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter

setConfirmIcon(Icon) - Method in class org.hkijena.jipipe.ui.components.ConfirmingButton

setContent(List<GraphNodeParameterReference>) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceGroup

setContent(T) - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameter

setContents(NodeGroupContents) - Method in class org.hkijena.jipipe.api.grouping.NodeGroup

setContext(Context) - Method in class org.hkijena.jipipe.ui.components.SplashScreen

setContext(Context) - Method in class org.hkijena.jipipe.ui.parameters.JIPipeParameterEditorUI

setContext(Context) - Method in class org.hkijena.jipipe.ui.parameters.ParameterPanel

setContextActions(List<NodeUIContextAction>) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

setConverter(JIPipeDataConverter) - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry.DataConverterEdge

setCorrectCorners(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background.RollingBallBackgroundEstimator2DAlgorithm

setCount(int, int) - Method in class org.hkijena.jipipe.ui.ijupdater.IJProgressAdapter

setCount(int, int) - Method in class org.hkijena.jipipe.ui.ijupdater.ProgressAdapter

setCounterAnnotation(String) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackMergerAlgorithm

setCrop(boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter

setCropC(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.CropToRoiAlgorithm

setCropRegions(RectangleList) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter

setCropT(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.CropToRoiAlgorithm

setCropXY(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.CropToRoiAlgorithm

setCropZ(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.CropToRoiAlgorithm

setCurrentConnectionDragSource(JIPipeDataSlotUI) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

setCurrentConnectionDragTarget(JIPipeDataSlotUI) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

setCurrentHighlightedForDisconnect(JIPipeDataSlotUI) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

setCurrentlySelectedValue(Object) - Method in class org.hkijena.jipipe.ui.extensionbuilder.JIPipeJsonExtensionContentListUI

Sets the selected value * * @param currentlySelectedValue The value

setCustomColumns(StringPredicate.List) - Method in class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm.DataBatchGenerationSettings

setCustomColumns(StringPredicate.List) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm.DataBatchGenerationSettings

setCustomDescription(String) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReference

setCustomDescription(String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Sets a custom description.

setCustomMax(double) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.DisplayRangeCalibrationAlgorithm

setCustomMin(double) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.DisplayRangeCalibrationAlgorithm

setCustomName(String) - Method in class org.hkijena.jipipe.api.compartments.algorithms.JIPipeProjectCompartment

setCustomName(String) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo

Overrides the name displayed in the UI

setCustomName(String) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReference

setCustomName(String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Sets a custom name.

setDarkBackground(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.AutoThreshold2DAlgorithm

setData(JIPipeDataSlot, int) - Method in class org.hkijena.jipipe.api.nodes.JIPipeDataBatch

Sets the data row of a given slot.

setData(JIPipeDataSlot, int) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch

Sets the input slot to only one row

setDataSetMatching(JIPipeColumnGrouping) - Method in class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm.DataBatchGenerationSettings

setDataSetMatching(JIPipeColumnGrouping) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm.DataBatchGenerationSettings

setDefaultRunThreads(int) - Method in class org.hkijena.jipipe.extensions.settings.RuntimeSettings

Sets the number of threads

setDefaultTestBenchThreads(int) - Method in class org.hkijena.jipipe.extensions.settings.RuntimeSettings

Sets the number of threads for test bench

setDefaultViewMode(JIPipeGraphViewMode) - Method in class org.hkijena.jipipe.extensions.settings.GraphEditorUISettings

setDeltaAngle(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceRadial

setDependencyAlgorithmIds(Set<String>) - Method in class org.hkijena.jipipe.api.registries.JIPipeDefaultNodeRegistrationTask

setDependencyCitations(StringList) - Method in class org.hkijena.jipipe.api.JIPipeMetadata

setDependencyDatatypeClasses(Set<Class<? extends JIPipeData>>) - Method in class org.hkijena.jipipe.api.registries.JIPipeDefaultNodeRegistrationTask

Sets dependency data classes.

setDependencyDatatypeIds(Set<String>) - Method in class org.hkijena.jipipe.api.registries.JIPipeDefaultNodeRegistrationTask

setDependencyId(String) - Method in class org.hkijena.jipipe.JIPipeMutableDependency

Sets the ID

setDependencyVersion(String) - Method in class org.hkijena.jipipe.JIPipeMutableDependency

Sets the version

setDepth(int) - Method in class org.hkijena.jipipe.ui.grapheditor.layout.MSTGraphAutoLayoutMethod.Edge

setDepth(int) - Method in class org.hkijena.jipipe.ui.grapheditor.layout.MSTGraphAutoLayoutMethod.Node

setDescription(String) - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

setDescription(String) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceGroup

setDescription(String) - Method in class org.hkijena.jipipe.api.JIPipeMetadata

Sets the description

setDescription(String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMutableNodeInfo

Sets the description

setDescription(String) - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess.Builder

Sets the description

setDescription(String) - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess

Sets the description

setDescription(String) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node

setDescription(String) - Method in class org.hkijena.jipipe.JIPipeImageJUpdateSiteDependency

setDescription(String) - Method in class org.hkijena.jipipe.ui.components.FormPanel.GroupHeaderPanel

Sets the description and sets the visibility

setDespeckleIterations(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HessianSegmentation2DAlgorithm

setDestination_x(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Paste2d

setDestination_x(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Paste3d

setDestination_y(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Paste2d

setDestination_y(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Paste3d

setDestination_z(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Paste3d

setDevice(int) - Method in class org.hkijena.jipipe.extensions.clij2.CLIJSettings

setDialog(JDialog) - Method in class org.hkijena.jipipe.ui.components.AddAlgorithmSlotPanel

setDialog(JDialog) - Method in class org.hkijena.jipipe.ui.components.AddDynamicParameterPanel

setDialog(JDialog) - Method in class org.hkijena.jipipe.ui.components.EditAlgorithmSlotPanel

setDilationErodeSteps(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.BrightSpotsSegmentation2DAlgorithm

setDilationIterations(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.InternalGradientSegmentation2DAlgorithm

setDimension(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MultiplyImageAndCoordinate

setDimensionOrder(DimensionOrder) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMEExporterSettings

setDiscardExistingAnnotations(boolean) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateWithAnnotationTable

setDisplayedParameters(JIPipeParameterCollection) - Method in class org.hkijena.jipipe.ui.parameters.ParameterPanel

setDocument(MarkdownDocument) - Method in class org.hkijena.jipipe.ui.components.MarkdownReader

setDocumentation(JIPipeDocumentation) - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess

setDoublePredicate(DoublePredicate) - Method in class org.hkijena.jipipe.extensions.parameters.predicates.StringOrDoublePredicate

setDoubleValue(double) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.StringOrDouble

setDragAndDropBehavior(JIPipeGraphDragAndDropBehavior) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

setDrawFilledOutline(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToMaskAlgorithm

setDrawFilledOutline(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToRGBAlgorithm

setDrawFilledOutline(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToMaskAlgorithm

setDrawFilledOutline(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToRGBAlgorithm

setDrawLabel(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToRGBAlgorithm

setDrawLabel(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToRGBAlgorithm

setDrawOutline(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToMaskAlgorithm

setDrawOutline(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToRGBAlgorithm

setDrawOutline(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToMaskAlgorithm

setDrawOutline(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToRGBAlgorithm

setDrawOutsideEdges(boolean) - Method in class org.hkijena.jipipe.extensions.settings.GraphEditorUISettings

setDrawOver(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToMaskAlgorithm

setDrawOver(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToRGBAlgorithm

setDrawOver(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToRGBAlgorithm

setDuplicateImage(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.LUTInverterAlgorithm

setDuplicateImage(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.RemoveLUTAlgorithm

setDuplicateImage(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.SetLUTFromColorAlgorithm

setDuplicateImage(boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.DisplayRangeCalibrationAlgorithm

setEigenvalueSelection(EigenvalueSelection2D) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HessianSegmentation2DAlgorithm

setEigenvalueSelection2D(EigenvalueSelection2D) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.Hessian2DAlgorithm

setElement(Strel.Shape) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.generate.GenerateStructureElementAlgorithm

setElement(Strel.Shape) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.Morphology2DAlgorithm

setEnabled(boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

setEnabled(boolean) - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameter

setEnabled(boolean) - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotSeriesBuilder

setEnableFallthrough(boolean) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.SplitByAnnotation

setEnableLayoutHelper(boolean) - Method in class org.hkijena.jipipe.extensions.settings.GraphEditorUISettings

setEntries(Map<String, JIPipeAnnotation>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeDataBatchKey

setEqualsString(String) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ExportDataByParameter

setErosionIterations(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.InternalGradientSegmentation2DAlgorithm

setErroneousNodes(Set<JIPipeNodeInfo>) - Method in class org.hkijena.jipipe.JIPipeRegistryIssues

setErroneousPlugins(Set<PluginInfo<JIPipeJavaExtension>>) - Method in class org.hkijena.jipipe.JIPipeRegistryIssues

setExactValue(int) - Method in class org.hkijena.jipipe.extensions.parameters.roi.IntModificationParameter

setExcludeEdges(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D

setExcludeOnEdges(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.LocalMaxima2DAlgorithm

setExcludeSelected(boolean) - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBenchSettings

setExpectedNumberOfObjects(int) - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm

setExponent(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Power

setExportedParameters(GraphNodeParameters) - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

setExportedParameters(GraphNodeParameters) - Method in class org.hkijena.jipipe.api.grouping.NodeGroup

setExportedParameters(GraphNodeParameters) - Method in class org.hkijena.jipipe.ui.settings.JIPipeProjectInfoParameters

setExporterSettings(OMEExporterSettings) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.OMEImageData

setExportHeight(int) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData

setExportWidth(int) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData

setExtractRois(boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter

setFactor(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AddImagesWeighted

setFactor(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ReduceStack

setFactor(double) - Method in class org.hkijena.jipipe.extensions.parameters.roi.IntModificationParameter

setFactor1(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AddImagesWeighted

setFactorX(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Scale2d

setFactorX(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Scale3d

setFactorY(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Scale2d

setFactorY(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Scale3d

setFactorZ(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Scale3d

setFastMode(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast.CLAHEContrastEnhancer

setFieldClass(Class<?>) - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess.Builder

Sets the field class

setFieldClass(Class<?>) - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess

For internal usage only

setFieldClass(Class<?>) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable.ParameterColumn

setFieldClassInfoId(String) - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess

setFieldClassInfoId(String) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable.ParameterColumn

setFileName(Path) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FileDataSource

Sets the file name

setFileNames(PathList) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FileListDataSource

Sets the file names

setFiles(Iterable<FileObject>) - Method in class org.hkijena.jipipe.ui.ijupdater.FileTableModel

setFiles(FilesCollection) - Method in class org.hkijena.jipipe.ui.ijupdater.FileTableModel

setFilesCollection(FilesCollection) - Method in class org.hkijena.jipipe.ui.ijupdater.ManagerUI

setFilesCollection(FilesCollection) - Method in class org.hkijena.jipipe.ui.ijupdater.UpdateSiteListUI

setFillBox(boolean) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer

Sets the flag that controls whether or not the box is filled and sends a RendererChangeEvent to all registered listeners.

setFillColor(OptionalColorParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesAlgorithm

setFillColor(Color) - Method in class org.hkijena.jipipe.ui.components.ColorIcon

setFillMeasurement(MeasurementColumn) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ColorRoiByStatisticsAlgorithm

setFilterMode(StringOrDoublePredicate.FilterMode) - Method in class org.hkijena.jipipe.extensions.parameters.predicates.StringOrDoublePredicate

setFilterOnlyFileNames(boolean) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ListFiles

setFilterOnlyFolderNames(boolean) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ListSubfolders

setFilterOnlyNames(boolean) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.FilterPaths

setFilters(StringAndStringPredicatePair.List) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.RemoveAnnotationByValue

setFilters(PathPredicate.List) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.FilterPaths

setFilters(PathPredicate.List) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ListFiles

setFilters(PathPredicate.List) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ListSubfolders

setFilters(StringFilterAndStringOrDoubleFilterPair.List) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.FilterTableAlgorithm

setFilters(StringPredicate.List) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.RemoveColumnAlgorithm

setFilters(StringPredicate.List) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.SplitTableIntoColumnsAlgorithm

setFilterString(String) - Method in class org.hkijena.jipipe.extensions.parameters.predicates.PathPredicate

setFilterString(String) - Method in class org.hkijena.jipipe.extensions.parameters.predicates.StringPredicate

setFirstColor(Color) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.SetLUTFromColorAlgorithm

setFirstIndex(OptionalIntegerParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm

setFirstName(String) - Method in class org.hkijena.jipipe.api.JIPipeAuthorMetadata

setFlipMode(TransformFlip2DAlgorithm.FlipMode) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformFlip2DAlgorithm

setFlipTemplateHorizontally(boolean) - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm

setFlipTemplateVertically(boolean) - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm

setFloatingPointOutput(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ImageCalculator2DAlgorithm

setFolderPath(Path) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FolderDataSource

Sets the folder path

setFolderPaths(PathList) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FolderListDataSource

Sets the folder path

setFontSize(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm

setForceCrossPlatformLookAndFeel(boolean) - Method in class org.hkijena.jipipe.extensions.settings.GeneralUISettings

setForceReflection(boolean) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree

setForegroundColor(Color) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm

setFramesSizeAnnotation(OptionalStringParameter) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePropertiesToAnnotationAlgorithm

setFullPath(boolean) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.SimplePathAnnotationGenerator

setFunctions(StringPatternExtractionFunction.List) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.ExtractAndReplaceAnnotation

setGaussianSigma(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.BrightSpotsSegmentation2DAlgorithm

setGaussSigma(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.InternalGradientSegmentation2DAlgorithm

setGenerateCachePreviews(boolean) - Method in class org.hkijena.jipipe.extensions.settings.GeneralUISettings

setGeneratedAnnotation(String) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateWithDataString

Sets generated annotation type

setGeneratedAnnotation(String) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.SimpleFileAnnotationGenerator

Sets generated annotation type

setGeneratedAnnotation(String) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.SimpleFolderAnnotationGenerator

Sets the generated annotation type

setGeneratedAnnotation(String) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.SimplePathAnnotationGenerator

setGeneratedAnnotation(OptionalStringParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExplodeRoiAlgorithm

setGeneratedAnnotation(OptionalStringParameter) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.SplitTableByColumnsAlgorithm

setGeneratedAnnotation(OptionalStringParameter) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.SplitTableIntoColumnsAlgorithm

setGeneratedColumn(String) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.ConvertToAnnotationTable

setGeneratedImageType(JIPipeDataInfoRef) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.ImagePlusFromFile

setGeneratedType(ColumnContentType) - Method in class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnGeneratorParameter

setGenerateResultPreviews(boolean) - Method in class org.hkijena.jipipe.extensions.settings.GeneralUISettings

setGeneratorSource(TableColumnGeneratorParameter) - Method in class org.hkijena.jipipe.extensions.tables.parameters.TableColumnSourceParameter

setGeneratorType(JIPipeDataInfoRef) - Method in class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnGeneratorParameter

setGetter(Supplier<Object>) - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess.Builder

Sets the getter

setGetter(Method) - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess

setGradientRadius(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HessianSegmentation2DAlgorithm

setGraph(JIPipeGraph) - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

setGraph(JIPipeGraph) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameters

setGraph(JIPipeGraph) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Sets the graph this algorithm is location in.

setGraphEditCursor(Point) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

setHasParameterSlot(boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm.ParameterSlotAlgorithmSettings

setHeight(IntModificationParameter) - Method in class org.hkijena.jipipe.extensions.parameters.roi.Margin

setHeightAnnotation(OptionalStringParameter) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePropertiesToAnnotationAlgorithm

setHeightTolerance(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.LocalMaxima2DAlgorithm

setHidden(boolean) - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

setHidden(boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMutableNodeInfo

setHistogramType(HistogramPlotData.HistogramType_) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.HistogramPlotData

setHyperstackReassignments(HyperstackDimensionPair.List) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.ReorderDimensionsAlgorithm

setIcon(JIPipeAlgorithmIconRef) - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

setIcon(ImageIcon) - Method in class org.hkijena.jipipe.ui.components.ZoomIcon

setIconName(String) - Method in class org.hkijena.jipipe.extensions.parameters.references.JIPipeAlgorithmIconRef

setId(String) - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

setId(String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMutableNodeInfo

Sets the ID

setId(String) - Method in class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnConversionParameter

Sets the ID of the selected entry

setId(String) - Method in class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnIntegrationParameter

Sets the ID of the selected entry

setId(String) - Method in class org.hkijena.jipipe.JIPipeJsonExtension

Sets the ID

setIgnoreCustomParameters(boolean) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree

setIgnoreMissingChannels(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SplitChannelsAlgorithm

setIgnoreMissingMetadata(boolean) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ExportDataByParameter

setIgnoreMissingSlices(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackSplitterAlgorithm

setIgnoreReflectionParameters(boolean) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree

setImageArea(Margin) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToMaskAlgorithm

setImageArea(Margin) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToRGBAlgorithm

setImageFilters(StringPredicate.List) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ImagePlusFromGUI

setImageFiltersOperation(LogicalOperation) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ImagePlusFromGUI

setImageJUpdateSiteDependencies(List<JIPipeImageJUpdateSiteDependency>) - Method in class org.hkijena.jipipe.JIPipeMutableDependency

setImageJUpdateSites(List<JIPipeImageJUpdateSiteDependency>) - Method in class org.hkijena.jipipe.JIPipeMutableDependency

setImageTypeAnnotation(OptionalStringParameter) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePropertiesToAnnotationAlgorithm

setIn(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ReplaceIntensity

setIndex(int) - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable.Row

Sets the location

setIndex(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LabelToMask

setIndex(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaskLabel

setIndexAnnotation(OptionalStringParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiStatisticsAlgorithm

setIndexIncrement(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm

setInfo(JIPipeNodeInfo) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Sets the JIPipeNodeInfo that describes this algorithm.

setInfo(JIPipeDataInfo) - Method in class org.hkijena.jipipe.extensions.parameters.references.JIPipeDataInfoRef

setInfo(JIPipeNodeInfo) - Method in class org.hkijena.jipipe.extensions.parameters.references.JIPipeNodeInfoRef

setInheritanceConversions(Map<JIPipeDataInfo, JIPipeDataInfo>) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo

setInheritanceConversionsFromRaw(Map<Class<? extends JIPipeData>, Class<? extends JIPipeData>>) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo

setInput(I) - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameter

setInputIsEDM(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.LocalMaxima2DAlgorithm

setInputSealed(boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

Seals/Unseals input slots

setInputSlots(List<JIPipeInputSlot>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMutableNodeInfo

Sets the input slots

setInstanceGenerator(Function<JIPipeDynamicParameterCollection.UserParameterDefinition, JIPipeMutableParameterAccess>) - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection

setInternalGradientRadius(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.InternalGradientSegmentation2DAlgorithm

setInternalPath(String) - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable

Sets the internal path

setInternalStoragePath(Path) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Sets the internal storage path relative to the output folder.

setInterpolationMethod(InterpolationMethod) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale2DAlgorithm

setInterpolationMethod(InterpolationMethod) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale3DAlgorithm

setInvert(boolean) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.FilterPaths

setInvert(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.FrangiVesselnessFeatures

setInvert(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.MeijeringVesselness2DFeatures

setInvert(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterRoiByStatisticsAlgorithm

setInvert(boolean) - Method in class org.hkijena.jipipe.extensions.parameters.predicates.DoublePredicate

setInvert(boolean) - Method in class org.hkijena.jipipe.extensions.parameters.predicates.PathPredicate

setInvert(boolean) - Method in class org.hkijena.jipipe.extensions.parameters.predicates.StringPredicate

setInvert(boolean) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.FilterTableAlgorithm

setInvertCustomColumns(boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm.DataBatchGenerationSettings

setInvertCustomColumns(boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm.DataBatchGenerationSettings

setIoMode(PathEditor.IOMode) - Method in class org.hkijena.jipipe.ui.components.PathEditor

setItemCount(int, int) - Method in class org.hkijena.jipipe.ui.ijupdater.IJProgressAdapter

setItemCount(int, int) - Method in class org.hkijena.jipipe.ui.ijupdater.ProgressAdapter

setItemMargin(double) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer

Sets the item margin and sends a RendererChangeEvent to all registered listeners.

setIterations(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumOctagon

setIterations(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumOctagon

setIterations(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyBinary2DAlgorithm

setKeepAnnotationColumns(boolean) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ConvertAnnotationTableToAnnotatedTables

setKeepSameChannelCount(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.ArrangeChannelsAlgorithm

setKernelFunction(String) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelIterating

setKernelFunction(String) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelSimpleIterating

setKernelScript(OpenCLKernelScript) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelIterating

setKernelScript(OpenCLKernelScript) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelSimpleIterating

setKey(String) - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess

For internal use only

setKey(String) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node

setKey(String) - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess

setKey(K) - Method in class org.hkijena.jipipe.extensions.parameters.pairs.Pair

setKey(String) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable.ParameterColumn

setKey(String) - Method in class org.hkijena.jipipe.utils.MacroFlag

setKey(String) - Method in class org.hkijena.jipipe.utils.MacroSetting

setLabel(String) - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestbenchSnapshot

setLabels(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm

setLastDirectoryBy(String, Path) - Method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings

Sets the last directory according to the key

setLastIndex(OptionalIntegerParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm

setLastName(String) - Method in class org.hkijena.jipipe.api.JIPipeAuthorMetadata

setLastParametersDirectory(Path) - Method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings

setLastProjectsDirectory(Path) - Method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings

setLayoutHelperEnabled(boolean) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

Enables or disables the layout helper

setLeft(IntModificationParameter) - Method in class org.hkijena.jipipe.extensions.parameters.roi.Margin

setLicense(String) - Method in class org.hkijena.jipipe.api.JIPipeMetadata

Sets the license

setLineColor(OptionalColorParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesAlgorithm

setLineMeasurement(MeasurementColumn) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ColorRoiByStatisticsAlgorithm

setLineThickness(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToMaskAlgorithm

setLineThickness(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToMaskAlgorithm

setLineWidth(OptionalDoubleParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesAlgorithm

setLoadFromCache(boolean) - Method in class org.hkijena.jipipe.api.JIPipeRunSettings

setLoadFromCache(boolean) - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBenchSettings

setLocal(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm

setLocalRadius(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm

setLocations(Map<String, Map<String, Point>>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

setLocationWithin(String, Point, String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Sets the UI location of this algorithm within the specified compartment

SetLUTFromColorAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut

SetLUTFromColorAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.SetLUTFromColorAlgorithm

SetLUTFromColorAlgorithm(SetLUTFromColorAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.SetLUTFromColorAlgorithm

setMaintainer(String) - Method in class org.hkijena.jipipe.JIPipeImageJUpdateSiteDependency

setMapFillColor(OptionalColorMapParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ColorRoiByStatisticsAlgorithm

setMapFillColor(OptionalColorMapParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SortAndExtractRoiByStatisticsAlgorithm

setMapLineColor(OptionalColorMapParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ColorRoiByStatisticsAlgorithm

setMapLineColor(OptionalColorMapParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SortAndExtractRoiByStatisticsAlgorithm

setMatrix(Matrix2DFloat) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convolve.Convolve2DAlgorithm

setMax(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsWithValuesOutOfRange

setMax(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsWithValuesWithinRange

setMax_display_intensity(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DepthColorProjection

setMax_z(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumZProjectionBounded

setMax_z(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanZProjectionBounded

setMax_z(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumZProjectionBounded

setMax_z(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumZProjectionThresholdedBounded

setMaximumBarWidth(double) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer

Sets the maximum bar width, which is specified as a percentage of the available space for all bars, and sends a RendererChangeEvent to all registered listeners.

setMaximumGreyValue(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AutomaticThreshold

setMaximumScale(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.FrangiVesselnessFeatures

setMaxInputSlots(int) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

Sets maximum number of input slots

setMaxIntensity(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2EntropyBox

setMaxNumCircles(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm

setMaxOutputSlots(int) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

Sets maximum number of output slots

setMaxParticleCircularity(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D

setMaxParticleSize(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D

setMaxRadius(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.FastHoughSegmentation2DAlgorithm

setMaxRadius(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm

setMaxSlope(float) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast.CLAHEContrastEnhancer

setMeanVisible(boolean) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer

Sets the flag that controls whether or not the mean indicator is drawn for each item, and sends a RendererChangeEvent to all registered listeners.

setMeasurementFilters(MeasurementFilter.List) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterRoiByStatisticsAlgorithm

setMeasurements(ImageStatisticsSetParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiStatisticsAlgorithm

setMedianVisible(boolean) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer

Sets the flag that controls whether or not the median indicator is drawn for each item, and sends a RendererChangeEvent to all registered listeners.

setMenuPath(String) - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

setMenuPath(String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMutableNodeInfo

Sets the menu path.

setMenuPathList(StringList) - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

setMetadata(JIPipeMetadata) - Method in class org.hkijena.jipipe.api.compartments.JIPipeExportedCompartment

Sets the metadata

setMetadata(JIPipeProjectMetadata) - Method in class org.hkijena.jipipe.api.JIPipeProjectTemplate

setMetadata(JIPipeMetadata) - Method in class org.hkijena.jipipe.JIPipeJsonExtension

Sets metadata

setMetadata(JIPipeMetadata) - Method in class org.hkijena.jipipe.JIPipeMutableDependency

Sets the metadata

setMetadataFrom(JIPipeGraphEdge) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphEdge

setMethod(RollingBallBackgroundEstimator2DAlgorithm.Method) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background.RollingBallBackgroundEstimator2DAlgorithm

setMethod(ZProjectorAlgorithm.Method) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.ZProjectorAlgorithm

setMethod(AutoThresholder.Method) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.AutoThreshold2DAlgorithm

setMimeType(String) - Method in class org.hkijena.jipipe.ui.texteditor.JIPipeTextEditor

setMin(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsWithValuesOutOfRange

setMin(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsWithValuesWithinRange

setMin_display_intensity(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DepthColorProjection

setMin_z(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumZProjectionBounded

setMin_z(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanZProjectionBounded

setMin_z(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumZProjectionBounded

setMin_z(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumZProjectionThresholdedBounded

setMinimumGreyValue(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AutomaticThreshold

setMinimumScale(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.FrangiVesselnessFeatures

setMinIntensity(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2EntropyBox

setMinNumCircles(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm

setMinParticleCircularity(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D

setMinParticleSize(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D

setMinRadius(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.FastHoughSegmentation2DAlgorithm

setMinRadius(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm

setMinScore(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.FastHoughSegmentation2DAlgorithm

setMissingImageJSites(Set<JIPipeImageJUpdateSiteDependency>) - Method in class org.hkijena.jipipe.JIPipeRegistryIssues

setMissingString(String) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ExportDataByParameter

setMode(RemoveOutliersFilter2DAlgorithm.Mode) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.RemoveOutliersFilter2DAlgorithm

setMode(TableToRectangularROIAlgorithm.Mode) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm

setMode(StringPatternExtraction.Mode) - Method in class org.hkijena.jipipe.extensions.parameters.patterns.StringPatternExtraction

setMode(DoublePredicate.Mode) - Method in class org.hkijena.jipipe.extensions.parameters.predicates.DoublePredicate

setMode(PathPredicate.Mode) - Method in class org.hkijena.jipipe.extensions.parameters.predicates.PathPredicate

setMode(StringPredicate.Mode) - Method in class org.hkijena.jipipe.extensions.parameters.predicates.StringPredicate

setMode(StringOrDouble.Mode) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.StringOrDouble

setMode(TableColumnSourceParameter.Mode) - Method in class org.hkijena.jipipe.extensions.tables.parameters.TableColumnSourceParameter

setMode(JIPipeDataTypePicker.Mode) - Method in class org.hkijena.jipipe.ui.components.JIPipeDataTypePicker

setMode(JIPipeNodeInfoPicker.Mode) - Method in class org.hkijena.jipipe.ui.components.JIPipeNodeInfoPicker

setModel(ComboBoxModel<T>) - Method in class org.hkijena.jipipe.ui.components.SearchBox

setModernizeCrossPlatformLookAndFeel(boolean) - Method in class org.hkijena.jipipe.extensions.settings.GeneralUISettings

setMultiChannelMode(HistogramGenerator.MultiChannelMode) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics.HistogramGenerator

setMultiObjectMaximumBoundingBoxOverlap(double) - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm

setMultiObjectScoreThreshold(double) - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm

setName(String) - Method in class org.hkijena.jipipe.api.data.JIPipeAnnotation

setName(String) - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

setName(String) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceGroup

setName(String) - Method in class org.hkijena.jipipe.api.JIPipeMetadata

Sets the name

setName(String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMutableNodeInfo

Sets the name

setName(String) - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess.Builder

Sets the name

setName(String) - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess

Sets the name

setName(String) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node

setName(String) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable.ParameterColumn

setName(String) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotDataSeries

setName(String) - Method in class org.hkijena.jipipe.JIPipeImageJUpdateSiteDependency

setName(String) - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotSeriesBuilder

setNativeValue(int) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.ImageStatisticsSetParameter

Sets the values from native values

setNeedsToExist(boolean) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FileDataSource

setNeedsToExist(boolean) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FolderDataSource

setNeverAskOnClosingTabs(boolean) - Method in class org.hkijena.jipipe.extensions.settings.GeneralUISettings

setNewInstance() - Method in class org.hkijena.jipipe.extensions.parameters.colors.OptionalColorMapParameter

setNewInstance() - Method in class org.hkijena.jipipe.extensions.parameters.colors.OptionalColorParameter

setNewInstance() - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameter

Adds a new instance of the content class Override this method for types that cannot be default-constructed

setNewInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.OptionalBooleanParameter

setNewInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.OptionalByteParameter

setNewInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.OptionalDoubleParameter

setNewInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.OptionalFloatParameter

setNewInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.OptionalIntegerParameter

setNewInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.OptionalLongParameter

setNewInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.OptionalPathParameter

setNewInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.OptionalShortParameter

setNewInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.OptionalStringParameter

setNewInstanceGenerator(Supplier<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.collections.SlotMapParameterCollection

setnodeClass(Class<? extends JIPipeGraphNode>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMutableNodeInfo

Sets the algorithm class

setNodeInfo(JIPipeNodeInfoRef) - Method in class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterAlgorithm

setNoLUT(boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMEExporterSettings

setNormalize(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics.HistogramGenerator

setNPoints(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AverageDistanceOfNClosestPoints

setNPoints(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AverageDistanceOfNFarOffPoints

setNumberOfBins(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AutomaticThreshold

setNumScales(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.FrangiVesselnessFeatures

setNumSlices(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ImageToStack

setNumThreads(int) - Method in class org.hkijena.jipipe.api.JIPipeRunSettings

setNumThreads(int) - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBenchSettings

setNumThreads(int) - Method in class org.hkijena.jipipe.ui.compat.RunSingleAlgorithmDialog

setOffset(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ReduceStack

setOnlyActiveImage(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ImagePlusFromGUI

setOpaque(boolean) - Method in class org.hkijena.jipipe.ui.components.FormPanel

setOpenTabs(List<String>) - Method in class org.hkijena.jipipe.ui.project.JIPipeProjectTabMetadata

setOperation(ImageCalculator2DAlgorithm.Operation) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ImageCalculator2DAlgorithm

setOperation(Morphology.Operation) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.Morphology2DAlgorithm

setOperation(MorphologyBinary2DAlgorithm.Operation) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyBinary2DAlgorithm

setOperation(LogicalOperation) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiCalculatorAlgorithm

setOptionPanelContent(Component) - Method in class org.hkijena.jipipe.ui.ijupdater.ManagerUI

setOrder(int) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node

setOrder(int) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ExtractParent

setOriginalBorderSize(int) - Method in class org.hkijena.jipipe.ui.components.ZoomFlatIconButton

setOriginalSize(int) - Method in class org.hkijena.jipipe.ui.components.ZoomFlatIconButton

setOut(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ReplaceIntensity

setOutline(RoiOutline) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.OutlineRoiAlgorithm

setOutline(RoiOutline) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RemoveBorderRoisAlgorithm

setOutput(O) - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameter

setOutputDirectory(Path) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ExportDataByParameter

setOutputFiles(boolean) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.FilterPaths

setOutputFolders(boolean) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.FilterPaths

setOutputNode(JIPipeCompartmentOutput) - Method in class org.hkijena.jipipe.api.compartments.algorithms.JIPipeProjectCompartment

Sets the compartment output.

setOutputNonExisting(boolean) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.FilterPaths

setOutputPath(Path) - Method in class org.hkijena.jipipe.api.JIPipeRunSettings

Sets the output path

setOutputPath(Path) - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBenchSettings

setOutputSealed(boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

Seals/Unseals output slots

setOutputSlots(List<JIPipeOutputSlot>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMutableNodeInfo

Sets the output slots

setOutputType(LocalMaxima2DAlgorithm.OutputType) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.LocalMaxima2DAlgorithm

setOverrideFillColor(OptionalColorParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToRGBAlgorithm

setOverrideFillColor(OptionalColorParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToRGBAlgorithm

setOverrideLineColor(OptionalColorParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToRGBAlgorithm

setOverrideLineColor(OptionalColorParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToRGBAlgorithm

setOverrideLineWidth(OptionalDoubleParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToRGBAlgorithm

setOverrideLineWidth(OptionalDoubleParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToRGBAlgorithm

setOverrideReferenceImage(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ImageRoiProcessorAlgorithm

setPadded(boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMEExporterSettings

setParallelizationEnabled(boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm

setParallelizationEnabled(boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm

setParallelizationEnabled(boolean) - Method in interface org.hkijena.jipipe.api.nodes.JIPipeParallelizedAlgorithm

User-defined parameter to control if parallelization is enabled

setParallelizationEnabled(boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeSimpleIteratingAlgorithm

setParameter(P) - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameter

setParameter(Object, boolean) - Method in class org.hkijena.jipipe.ui.parameters.JIPipeParameterEditorUI

Sets the parameter value.

setParameterAnnotationsPrefix(String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm.ParameterSlotAlgorithmSettings

setParameterAnnotationsUseInternalNames(boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm.ParameterSlotAlgorithmSettings

setParameterData(Map<String, Object>) - Method in class org.hkijena.jipipe.extensions.multiparameters.datatypes.ParametersData

setParameterHolder(JIPipeParameterCollection) - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess

For internal usage only

setParameterReferenceGroups(List<GraphNodeParameterReferenceGroup>) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameters

setParameters(String) - Method in class org.hkijena.jipipe.api.compat.ImageJDatatypeImporter

Sets arbitrary string data that can be used by the adapter for the conversion

setParameters(BiMap<String, JIPipeParameterAccess>) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node

setParameters(int, int, int, int, int, double, int, double, int, int, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.utils.Hough_Circle

Import values from GUI class before starting the analysis thread

setParameterTable(ParameterTable) - Method in class org.hkijena.jipipe.extensions.multiparameters.datasources.ParametersDataTableDefinition

setParent(NodeGroup) - Method in class org.hkijena.jipipe.api.grouping.parameters.NodeGroupContents

setParent(JIPipeGraphNode) - Method in class org.hkijena.jipipe.extensions.multiparameters.datasources.GeneratedParameters

setParentPath(Path) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.RelativizeByParameter

Sets the subfolder

setPassThrough(boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

setPath(String) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReference

setPath(Path) - Method in class org.hkijena.jipipe.ui.components.PathEditor

setPathMode(PathEditor.PathMode) - Method in class org.hkijena.jipipe.ui.components.PathEditor

setPathName(String) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.RenameByString

Sets the subfolder

setPersistence(JIPipeParameterPersistence) - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess

setPersistence(JIPipeParameterPersistence) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node

setPersistence(JIPipeParameterPersistence) - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess

setPlaneIndex(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CopySlice

setPlaneNumberAnnotation(OptionalStringParameter) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePropertiesToAnnotationAlgorithm

setPlotType(JIPipeDataInfoRef) - Method in class org.hkijena.jipipe.extensions.plots.PlotGeneratorAlgorithm

setPlotType(JIPipeDataInfoRef) - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotBuilderUI

setPositionC(OptionalIntegerParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesAlgorithm

setPositionT(OptionalIntegerParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesAlgorithm

setPositionX(OptionalDoubleParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesAlgorithm

setPositionY(OptionalDoubleParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesAlgorithm

setPositionZ(OptionalIntegerParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesAlgorithm

setPreferAssociatedImage(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ImageRoiProcessorAlgorithm

setPreferAssociatedImage(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToMaskAlgorithm

setPreferAssociatedImage(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToRGBAlgorithm

setPrefix(String) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.TemporaryFileDataSource

setPreprocessingScript(PythonScript) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelIterating

setPreprocessingScript(PythonScript) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelSimpleIterating

setPreSmoothing(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background.RollingBallBackgroundEstimator2DAlgorithm

setPreventUpdateSlots(boolean) - Method in class org.hkijena.jipipe.api.grouping.GraphWrapperAlgorithm

setPreviewHeight(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.misc.DataToPreviewAlgorithm

setPreviewHeight(int) - Method in class org.hkijena.jipipe.extensions.settings.GeneralUISettings

setPreviewWidth(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.misc.DataToPreviewAlgorithm

setPreviewWidth(int) - Method in class org.hkijena.jipipe.extensions.settings.GeneralUISettings

setPriority(double) - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess.Builder

Sets the priority

setPriority(double) - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess

setPriority(double) - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess

setProcessorParameters(ConvertingTableColumnProcessorParameterList) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ConvertColumnsAlgorithm

setProcessorParameters(IntegratingTableColumnProcessorParameterList) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.IntegrateColumnsAlgorithm

setProject(JIPipeProject) - Method in class org.hkijena.jipipe.api.compartments.algorithms.JIPipeProjectCompartment

Sets the project.

setProject(JIPipeProject) - Method in class org.hkijena.jipipe.ui.settings.JIPipeProjectInfoParameters

setProjectAllHyperstackTimePoints(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.ZProjectorAlgorithm

setProjectInfoGeneratesPreview(boolean) - Method in class org.hkijena.jipipe.extensions.settings.GeneralUISettings

setProjectTemplate(ProjectsSettings.ProjectTemplateEnum) - Method in class org.hkijena.jipipe.extensions.settings.ProjectsSettings

setPropertyPanel(Component) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

Sets the component displayed in the right property panel

setRadius(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ClosingBox

setRadius(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ClosingDiamond

setRadius(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2OpeningBox

setRadius(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2OpeningDiamond

setRadius(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background.RollingBallBackgroundEstimator2DAlgorithm

setRadius(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurFilter2DAlgorithm

setRadius(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.generate.GenerateStructureElementAlgorithm

setRadius(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMaximumFilter2DAlgorithm

setRadius(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMinimumFilter2DAlgorithm

setRadius(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalVarianceFilter2DAlgorithm

setRadius(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.RemoveNaNFilter2DAlgorithm

setRadius(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.Morphology2DAlgorithm

setRadius(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyInternalGradient2DAlgorithm

setRadius(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.RemoveOutliersFilter2DAlgorithm

setRadiusIncrement(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm

setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BottomHatBox

setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BottomHatSphere

setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountNonZeroPixels2dSphere

setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountNonZeroPixelsSliceBySliceSphere

setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountNonZeroVoxels3dSphere

setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DetectMaximaSliceBySliceBox

setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DetectMinimaSliceBySliceBox

setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2EntropyBox

setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum2dBox

setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum2dSphere

setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum3dBox

setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum3dSphere

setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumSliceBySliceSphere

setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean2dBox

setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean2dSphere

setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean3dBox

setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean3dSphere

setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanSliceBySliceSphere

setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median2dBox

setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median2dSphere

setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median3dBox

setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median3dSphere

setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MedianSliceBySliceBox

setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MedianSliceBySliceSphere

setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum2dBox

setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum2dSphere

setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum3dBox

setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum3dSphere

setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumSliceBySliceSphere

setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TopHatBox

setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TopHatSphere

setRadiusX(float) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.BoxFilter3DAlgorithm

setRadiusX(float) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurFilter3DAlgorithm

setRadiusX(float) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMaximumFilter3DAlgorithm

setRadiusX(float) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMinimumFilter3DAlgorithm

setRadiusX(float) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalVarianceFilter3DAlgorithm

setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BottomHatBox

setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BottomHatSphere

setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountNonZeroPixels2dSphere

setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountNonZeroPixelsSliceBySliceSphere

setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountNonZeroVoxels3dSphere

setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DetectMaximaSliceBySliceBox

setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DetectMinimaSliceBySliceBox

setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2EntropyBox

setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum2dBox

setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum2dSphere

setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum3dBox

setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum3dSphere

setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumSliceBySliceSphere

setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean2dBox

setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean2dSphere

setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean3dBox

setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean3dSphere

setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanSliceBySliceSphere

setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median2dBox

setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median2dSphere

setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median3dBox

setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median3dSphere

setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MedianSliceBySliceBox

setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MedianSliceBySliceSphere

setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum2dBox

setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum2dSphere

setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum3dBox

setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum3dSphere

setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumSliceBySliceSphere

setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TopHatBox

setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TopHatSphere

setRadiusY(float) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.BoxFilter3DAlgorithm

setRadiusY(float) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurFilter3DAlgorithm

setRadiusY(float) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMaximumFilter3DAlgorithm

setRadiusY(float) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMinimumFilter3DAlgorithm

setRadiusY(float) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalVarianceFilter3DAlgorithm

setRadiusZ(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BottomHatBox

setRadiusZ(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BottomHatSphere

setRadiusZ(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountNonZeroVoxels3dSphere

setRadiusZ(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2EntropyBox

setRadiusZ(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum3dBox

setRadiusZ(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum3dSphere

setRadiusZ(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean3dBox

setRadiusZ(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean3dSphere

setRadiusZ(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median3dBox

setRadiusZ(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median3dSphere

setRadiusZ(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum3dBox

setRadiusZ(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum3dSphere

setRadiusZ(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TopHatBox

setRadiusZ(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TopHatSphere

setRadiusZ(float) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.BoxFilter3DAlgorithm

setRadiusZ(float) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurFilter3DAlgorithm

setRadiusZ(float) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMaximumFilter3DAlgorithm

setRadiusZ(float) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMinimumFilter3DAlgorithm

setRadiusZ(float) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalVarianceFilter3DAlgorithm

setRankingFunction(RankingFunction<T>) - Method in class org.hkijena.jipipe.ui.components.SearchBox

setRatio(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm

setRecalibrate(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.DivideByMaximumAlgorithm

setRecentJsonExtensionProjects(PathList) - Method in class org.hkijena.jipipe.extensions.settings.ProjectsSettings

setRecentProjects(PathList) - Method in class org.hkijena.jipipe.extensions.settings.ProjectsSettings

setRectangles(Margin.List) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.AppendRectangularRoiAlgorithm

setRectangles(RectangleList) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.DefineRectangularRoiAlgorithm

setRectangles(Margin.List) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ReferencedAppendRectangularRoiAlgorithm

setRectangles(Margin.List) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ReferencedDefineRectangularRoiAlgorithm

setRecursive(boolean) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ListFiles

setRecursive(boolean) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ListSubfolders

setRecursiveFollowsLinks(boolean) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ListFiles

setRecursiveFollowsLinks(boolean) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ListSubfolders

setReference(double) - Method in class org.hkijena.jipipe.extensions.parameters.predicates.DoublePredicate

setReferenceSlice(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2EqualizeMeanIntensitiesOfSlices

setRegexString(String) - Method in class org.hkijena.jipipe.extensions.parameters.patterns.StringPatternExtraction

setRegistry(JIPipeDefaultRegistry) - Method in class org.hkijena.jipipe.extensions.jsonextensionloader.JsonExtensionLoaderExtension

setRegistry(JIPipeDefaultRegistry) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension

setRegistry(JIPipeDefaultRegistry) - Method in interface org.hkijena.jipipe.JIPipeJavaExtension

Sets the registry

setRegistry(JIPipeDefaultRegistry) - Method in class org.hkijena.jipipe.JIPipeJsonExtension

Sets the registry instance

setRegistry(JIPipeDefaultRegistry) - Method in class org.hkijena.jipipe.ui.components.SplashScreen

setRelativeLocation(Path) - Method in class org.hkijena.jipipe.api.JIPipeProjectTemplate

setRemoveExtensions(boolean) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.SimplePathAnnotationGenerator

setRemoveLut(boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.ImagePlusFromFile

setRemoveOutputAnnotations(boolean) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.ConvertToAnnotationTable

setRenamingEntries(StringFilterAndStringPair.List) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.RenameColumnsAlgorithm

setRenamingEntries(StringFilterAndStringPair.List) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.RenameTableColumnsAlgorithm

setRenderer(ListCellRenderer<T>) - Method in class org.hkijena.jipipe.ui.components.SearchBox

setReplaceIfExists(boolean) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.GenerateColumnAlgorithm

setReplaceIfExists(boolean) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.SetColumnAlgorithm

setReport(JIPipeValidityReport) - Method in class org.hkijena.jipipe.ui.components.JIPipeValidityReportUI

setResolution(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm

setResourcePath(String) - Method in class org.hkijena.jipipe.api.JIPipeProjectTemplate

setRestoreTabs(boolean) - Method in class org.hkijena.jipipe.extensions.settings.ProjectsSettings

setRestrictToROI(boolean) - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm

setRight(IntModificationParameter) - Method in class org.hkijena.jipipe.extensions.parameters.roi.Margin

setRoi(Margin) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformCrop2DAlgorithm

SetRoiImageAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

Wrapper around RoiManager

SetRoiImageAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SetRoiImageAlgorithm

Instantiates a new node type.

SetRoiImageAlgorithm(SetRoiImageAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SetRoiImageAlgorithm

Instantiates a new node type.

setRoiName(OptionalStringParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesAlgorithm

setRollingBallRadius(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.BrightSpotsSegmentation2DAlgorithm

setRotateTemplate(IntegerList) - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm

setRotationDirection(TransformRotate2DAlgorithm.RotationMode) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformRotate2DAlgorithm

setRotations(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformRotate2DAlgorithm

setRowGenerator(Supplier<List<Object>>) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable

setRowList(List<JIPipeExportedDataTable.Row>) - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable

Sets list of rows

setRows(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.MontageToStackAlgorithm

setRows(OptionalIntegerParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm

setSameColumnOperation(LogicalOperation) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.FilterTableAlgorithm

setSameMeasurementOperation(LogicalOperation) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterRoiByStatisticsAlgorithm

setSaveOutputs(boolean) - Method in class org.hkijena.jipipe.api.JIPipeRunSettings

setSaveOutputs(boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

setSaveOutputs(boolean) - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBenchSettings

setSaveROI(boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMEExporterSettings

setScalar(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AddImageAndScalar

setScalar(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2EqualConstant

setScalar(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GreaterConstant

setScalar(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GreaterOrEqualConstant

setScalar(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MultiplyImageAndScalar

setScalar(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NotEqualConstant

setScalar(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SmallerConstant

setScalar(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SmallerOrEqualConstant

setScalar(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SubtractImageFromScalar

setScale(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm

setScaleFactorX(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceRadial

setScaleFactorY(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceRadial

setScales(DoubleList) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.MeijeringVesselness2DFeatures

setSecondColor(Color) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.SetLUTFromColorAlgorithm

setSelectedDataTypes(Set<JIPipeDataInfo>) - Method in class org.hkijena.jipipe.ui.components.JIPipeDataTypePicker

setSelectedInfo(JIPipeDataInfo) - Method in class org.hkijena.jipipe.ui.components.AddAlgorithmSlotPanel

setSelectedInfo(JIPipeParameterTypeInfo) - Method in class org.hkijena.jipipe.ui.components.AddDynamicParameterPanel

setSelectedInfo(JIPipeDataInfo) - Method in class org.hkijena.jipipe.ui.components.EditAlgorithmSlotPanel

setSelectedInfos(Set<JIPipeNodeInfo>) - Method in class org.hkijena.jipipe.ui.components.JIPipeNodeInfoPicker

setSelectedItem(T) - Method in class org.hkijena.jipipe.ui.components.SearchBox

setSelectedNode(JIPipeGraphNode) - Method in class org.hkijena.jipipe.ui.components.PickNodeDialog

setSelectedTab(String) - Method in class org.hkijena.jipipe.ui.project.JIPipeProjectTabMetadata

setSelection(IntModificationParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SortAndExtractRoiByStatisticsAlgorithm

setSelectionInterval(int, int) - Method in class org.hkijena.jipipe.ui.components.MultiSelectionModel

setSelectionInterval(int, int) - Method in class org.hkijena.jipipe.ui.components.SingleSelectionModel

setSeparateChannels(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background.RollingBallBackgroundEstimator2DAlgorithm

setSeparatorString(String) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ExportDataByParameter

setSetter(Function<Object, Boolean>) - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess.Builder

Sets the setter

setSetter(Method) - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess

setShortKey(String) - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess.Builder

Sets the short key

setShortKey(String) - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess

setShortKey(String) - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess

setShowIntroduction(boolean) - Method in class org.hkijena.jipipe.extensions.settings.GeneralUISettings

setShowParameterSearchBar(boolean) - Method in class org.hkijena.jipipe.extensions.settings.GeneralUISettings

setShowProjectInfo(boolean) - Method in class org.hkijena.jipipe.extensions.settings.GeneralUISettings

setSigma(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.AddNoise2DAlgorithm

setSigma1x(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian2d

setSigma1x(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian3d

setSigma1y(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian2d

setSigma1y(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian3d

setSigma1z(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian3d

setSigma2x(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian2d

setSigma2x(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian3d

setSigma2y(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian2d

setSigma2y(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian3d

setSigma2z(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian3d

setSigmaX(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.GaussianBlur2DAlgorithm

setSigmaX(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.GaussianBlur3DAlgorithm

setSigmaY(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.GaussianBlur2DAlgorithm

setSigmaY(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.GaussianBlur3DAlgorithm

setSigmaZ(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.GaussianBlur3DAlgorithm

setSilent(boolean) - Method in class org.hkijena.jipipe.extensions.settings.ExtensionSettings

setSkipExisting(boolean) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.CopyPath

setSkipIncompleteDataSets(boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm.DataBatchGenerationSettings

setSkipIncompleteDataSets(boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm.DataBatchGenerationSettings

setSkipInvalid(boolean) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.CopyPath

setSliceAnnotation(String) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics.GreyscalePixelsGenerator

setSliceAnnotation(String) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics.HistogramGenerator

setSlicingMode(FrangiVesselnessFeatures.SlicingMode) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.FrangiVesselnessFeatures

setSlotConfiguration(JIPipeSlotConfiguration) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

setSlotName(String) - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable

Sets the slot name

setSmoothing(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.Hessian2DAlgorithm

setSmoothing(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HessianSegmentation2DAlgorithm

setSortedStackIds(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackSplitterAlgorithm

setSortOrderList(MeasurementColumnSortOrder.List) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SortAndExtractRoiByStatisticsAlgorithm

setSortOrderList(StringFilterAndSortOrderPair.List) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.SortTableAlgorithm

setSource(JIPipeParameterCollection) - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess.Builder

Sets the parameter source

setSource(JIPipeParameterCollection) - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess

setSourceDocumentation(JIPipeParameterCollection, JIPipeDefaultDocumentation) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree

Sets source documentation

setSplit(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.DefineRectangularRoiAlgorithm

setSplit(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ReferencedDefineRectangularRoiAlgorithm

setSplitAfterwards(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiCalculatorAlgorithm

setSplitByInputSlots(boolean) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ExportDataByParameter

setSplitC(boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMEExporterSettings

setSplitChannels(boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter

setSplitCharacter(String) - Method in class org.hkijena.jipipe.extensions.parameters.patterns.StringPatternExtraction

setSplitFocalPlanes(boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter

setSplitPickedIndex(int) - Method in class org.hkijena.jipipe.extensions.parameters.patterns.StringPatternExtraction

setSplitSlices(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D

setSplitT(boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMEExporterSettings

setSplitTimePoints(boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter

setSplitZ(boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMEExporterSettings

setStackOrder(DimensionOrder) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter

setStackSizeAnnotation(OptionalStringParameter) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePropertiesToAnnotationAlgorithm

setStartAngleDegrees(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceRadial

setStartSlice(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.ZProjectorAlgorithm

setStartX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Crop2d

setStartX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Crop3d

setStartY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Crop2d

setStartY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Crop3d

setStartZ(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Crop3d

setStatisticsParameters(ImageStatisticsSetParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D

setStitchTiles(boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter

setStopSlice(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.ZProjectorAlgorithm

setStoragePath(Path) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

Sets storage path that is used during running the algorithm for saving the results

setStoragePath(Path) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Sets the storage path.

setStoredAsResource(boolean) - Method in class org.hkijena.jipipe.api.JIPipeProjectTemplate

setStoreToCache(boolean) - Method in class org.hkijena.jipipe.api.JIPipeRunSettings

setStoreToCache(boolean) - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBenchSettings

setStrict(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.LocalMaxima2DAlgorithm

setStrictMode(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.MacroWrapperAlgorithm

setStringPredicate(StringPredicate) - Method in class org.hkijena.jipipe.extensions.parameters.predicates.StringOrDoublePredicate

setStringValue(String) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.StringOrDouble

setSubFolder(String) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ListFiles

setSubFolder(String) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ListSubfolders

setSubPath(Path) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ConcatenateByParameter

Sets the subfolder

setSubtract(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background.RollingBallBackgroundEstimator2DAlgorithm

setSuffix(String) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.TemporaryFileDataSource

setSwapDimensions(boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter

setSwitchPanningDirection(boolean) - Method in class org.hkijena.jipipe.extensions.settings.GraphEditorUISettings

setT(int) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.SliceIndex

setTable(ResultsTable) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

setTables(ResultsTableDataList) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.DefineTablesAlgorithm

setTempDirectory(OptionalPathParameter) - Method in class org.hkijena.jipipe.extensions.settings.RuntimeSettings

setTemplateDescription(String) - Method in class org.hkijena.jipipe.api.JIPipeProjectMetadata

setTemplateMatchingMethod(TemplateMatchingMethod) - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm

setTemporaryDocument(MarkdownDocument) - Method in class org.hkijena.jipipe.ui.components.MarkdownReader

Sets the document to some temporary one without changing the reference to the main document

setText(String) - Method in class org.hkijena.jipipe.ui.components.FancyTextField

setText(String) - Method in class org.hkijena.jipipe.ui.components.SearchTextField

setText(String) - Method in class org.hkijena.jipipe.ui.texteditor.JIPipeTextEditor

setThreadPool(JIPipeFixedThreadPool) - Method in class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

Sets the thread pool.

setThreshold(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Threshold

setThreshold(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.LocalMaxima2DAlgorithm

setThreshold(float) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.RemoveOutliersFilter2DAlgorithm

setThreshold(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm

setThreshold(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.ManualThreshold16U2DAlgorithm

setThreshold(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.ManualThreshold8U2DAlgorithm

setThreshold_intensity(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumZProjectionThresholdedBounded

setTitle(String) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData

Sets the plot title

setTitle(String) - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane.DocumentTab

setTitle(String) - Method in class org.hkijena.jipipe.ui.ijupdater.IJProgressAdapter

setTitle(String) - Method in class org.hkijena.jipipe.ui.ijupdater.ProgressAdapter

setTitle(String) - Method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWindow

setTitle(String) - Method in class org.hkijena.jipipe.ui.JIPipeProjectWindow

setTitleAnnotation(OptionalStringParameter) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePropertiesToAnnotationAlgorithm

setTitleAnnotation(OptionalStringParameter) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter

setTitleAnnotation(OptionalStringParameter) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.ImagePlusFromFile

setTitleFilters(StringPredicate.List) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ResultsTableFromGUI

setTitleFiltersOperation(LogicalOperation) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ResultsTableFromGUI

setTo(JIPipeSlotConfiguration) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

setTo(JIPipeSlotConfiguration) - Method in interface org.hkijena.jipipe.api.data.JIPipeSlotConfiguration

Makes this slot configuration equivalent to the provided one

setToAskOnClose(JFrame, String, String) - Static method in class org.hkijena.jipipe.utils.UIUtils

Installs an event to the window that asks the user before the window is closes

setToExample(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.ModifyAnnotationScript

setToExample(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelIterating

setToExample(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelSimpleIterating

setToExample(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.MacroWrapperAlgorithm

setToExample(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterAndMergeRoiByStatisticsScriptAlgorithm

setToExample(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterRoiByStatisticsScriptAlgorithm

setToExample(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.python.IteratingPythonScriptAlgorithm

setToExample(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.python.MergingPythonScriptAlgorithm

setToExample(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.python.ParameterSlotPythonScriptAlgorithm

setToExample(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.python.PythonScriptAlgorithm

setToExample(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.python.SimpleIteratingPythonScriptAlgorithm

setToExample(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ModifyAndMergeTablesScript

setToExample(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ModifyTablesScript

setToExample(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.TablesFromScript

setTop(IntModificationParameter) - Method in class org.hkijena.jipipe.extensions.parameters.roi.Margin

setTrack(int) - Method in class org.hkijena.jipipe.ui.grapheditor.layout.MSTGraphAutoLayoutMethod.Node

setTraits(List<JIPipeAnnotation>) - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable.Row

Sets annotations

setTransform(String) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AffineTransform2d

setTransform(String) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AffineTransform3d

setTransformation(ApplyMath2DAlgorithm.Transformation) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyMath2DAlgorithm

setTransformation(ApplyTransform2DAlgorithm.Transformation) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyTransform2DAlgorithm

setTranslateX(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Translate2d

setTranslateX(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Translate3d

setTranslateY(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Translate2d

setTranslateY(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Translate3d

setTranslateZ(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Translate3d

setTree(JIPipeParameterTree) - Method in class org.hkijena.jipipe.ui.components.ParameterTreeUI

setUiExcludedSubParameters(Set<String>) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node

setUiHidden(boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphEdge

setUIOrder(int) - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess.Builder

Sets the UI order

setUIOrder(int) - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess

setUiOrder(int) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node

setUIOrder(int) - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess

setUniqueStackIds(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackSplitterAlgorithm

setUpdateSiteDependencies(JIPipeImageJUpdateSiteDependency.List) - Method in class org.hkijena.jipipe.api.JIPipeProjectMetadata

setUpdateSiteDependenciesParameter(JIPipeImageJUpdateSiteDependency.List) - Method in class org.hkijena.jipipe.JIPipeJsonExtension

setUpdateSitesToAddAndActivate(List<UpdateSite>) - Method in class org.hkijena.jipipe.ui.ijupdater.JIPipeImageJPluginManager

setUrl(String) - Method in class org.hkijena.jipipe.JIPipeImageJUpdateSiteDependency

setUrls(StringList) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.DownloadFilesDataSource

setUseAveraging(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale2DAlgorithm

setUseAveraging(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale3DAlgorithm

setUseBioFormats(boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesSettings

setUseExactValue(boolean) - Method in class org.hkijena.jipipe.extensions.parameters.roi.IntModificationParameter

setUseNativeChooser(boolean) - Method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings

setUseOutlinePaintForWhiskers(boolean) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer

Sets the flag that, if true, causes the whiskers to be drawn using the series outline paint, and sends a RendererChangeEvent to all registered listeners.

setUserSelectedMethod(String) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AutomaticThreshold

setValidateImageJDependencies(boolean) - Method in class org.hkijena.jipipe.extensions.settings.ExtensionSettings

setValidateNodeTypes(boolean) - Method in class org.hkijena.jipipe.extensions.settings.ExtensionSettings

setValidateOnSave(boolean) - Method in class org.hkijena.jipipe.extensions.settings.GeneralUISettings

setValue(String) - Method in class org.hkijena.jipipe.api.data.JIPipeAnnotation

setValue(String, T) - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection

Sets a parameter value

setValue(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyMath2DAlgorithm

setValue(String) - Method in class org.hkijena.jipipe.extensions.parameters.generators.IntegerRange

setValue(V) - Method in class org.hkijena.jipipe.extensions.parameters.pairs.Pair

setValue(T) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DynamicEnumParameter

setValue(String) - Method in class org.hkijena.jipipe.utils.MacroSetting

setValueAt(Object, int, int) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

setValueAt(Object, int, int) - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable

setValueAt(Object, int, int) - Method in class org.hkijena.jipipe.api.data.JIPipeMergedDataSlotTable

setValueAt(Object, int, int) - Method in class org.hkijena.jipipe.api.data.JIPipeMergedExportedDataTable

setValueAt(Object, int, int) - Method in class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2D

setValueAt(Object, int, int) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable

setValueAt(Object, int, int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

setValueAt(Object, int, int) - Method in class org.hkijena.jipipe.ui.batchassistant.DataSlotTableUI.WrapperTableModel

setValueAt(Object, int, int) - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheDataSlotTableUI.WrapperTableModel

setValueAt(Object, int, int) - Method in class org.hkijena.jipipe.ui.ijupdater.FileTableModel

setValueAxisLabel(String) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CategoryPlotData

setValueAxisLabel(String) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.HistogramPlotData

setValueB(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumImageAndScalar

setValueB(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumImageAndScalar

setValueReplacement(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2FloodFillDiamond

setValues(Set<T>) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DynamicSetParameter

setValueToReplace(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2FloodFillDiamond

setVersion(String) - Method in class org.hkijena.jipipe.JIPipeJsonExtension

Sets the version

setViewMode(JIPipeGraphViewMode) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

setVisibility(JIPipeParameterVisibility) - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess.Builder

Sets the visibility

setVisibility(JIPipeParameterVisibility) - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess

Sets the visibility

setVisibility(String, boolean) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterCollectionVisibilities

Sets the visibility of parameter with specified key

setVisibility(JIPipeParameterVisibility) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node

setVisibility(JIPipeParameterVisibility) - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess

setVisible(boolean) - Method in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog

setVisible(boolean) - Method in class org.hkijena.jipipe.utils.MacroFlag

setVisibleCompartments(Set<String>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Sets the list of additional compartments this algorithm is visible in.

setVisibleParameters(Set<String>) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterCollectionVisibilities

Sets visible parameters

setWebsite(String) - Method in class org.hkijena.jipipe.api.JIPipeMetadata

Sets the website

setWhiskerWidth(double) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer

Sets the width of the whiskers as a fraction of the bar width and sends a RendererChangeEvent to all registered listeners.

setWidth(IntModificationParameter) - Method in class org.hkijena.jipipe.extensions.parameters.roi.Margin

setWidthAnnotation(OptionalStringParameter) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePropertiesToAnnotationAlgorithm

setWithMetadataKeys(boolean) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ExportDataByParameter

setWithParents(boolean) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.CreateDirectory

Sets the subfolder

setWorkDirectory(Path) - Method in class org.hkijena.jipipe.api.JIPipeProject

Sets the folder where the project is currently working in.

setWorkDirectory(Path) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Sets the current work directory of this algorithm.

setWorkDirectory(Path) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FileDataSource

setWorkDirectory(Path) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FileListDataSource

setWorkDirectory(Path) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FolderDataSource

setWorkDirectory(Path) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FolderListDataSource

setWrappedGraph(JIPipeGraph) - Method in class org.hkijena.jipipe.api.grouping.GraphWrapperAlgorithm

setWrappedGraph(JIPipeGraph) - Method in class org.hkijena.jipipe.api.grouping.parameters.NodeGroupContents

setxAxis(IntModificationParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformEqualCanvasSize2DAlgorithm

setxAxis(IntModificationParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformExpandCanvas2DAlgorithm

setxAxis(OptionalIntModificationParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale2DAlgorithm

setxAxis(OptionalIntModificationParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale3DAlgorithm

setxAxisLabel(String) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.XYPlotData

setyAxis(IntModificationParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformEqualCanvasSize2DAlgorithm

setyAxis(IntModificationParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformExpandCanvas2DAlgorithm

setyAxis(OptionalIntModificationParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale2DAlgorithm

setyAxis(OptionalIntModificationParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale3DAlgorithm

setyAxisLabel(String) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.XYPlotData

setZ(int) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.SliceIndex

setzAxis(OptionalIntModificationParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale3DAlgorithm

setZoom(double) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

Sheet(String, Icon, String, Icon, JIPipeParameterCollection) - Constructor for class org.hkijena.jipipe.api.registries.JIPipeSettingsRegistry.Sheet

Creates a new instance

ShortParameterTypeInfo - Class in org.hkijena.jipipe.extensions.parameters.primitives

Info for Short

ShortParameterTypeInfo() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.ShortParameterTypeInfo

ShortPrimitiveParameterTypeInfo - Class in org.hkijena.jipipe.extensions.parameters.primitives

Info for Short

ShortPrimitiveParameterTypeInfo() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.ShortPrimitiveParameterTypeInfo

ShortRangeParameterGenerator - Class in org.hkijena.jipipe.extensions.parameters.generators

Generates Short

ShortRangeParameterGenerator(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.extensions.parameters.generators.ShortRangeParameterGenerator

Creates a new instance

shouldFillGap(int, int, int, int) - Method in class org.hkijena.jipipe.utils.CustomTabbedPaneUI

shouldPadTabRun(int, int) - Method in class org.hkijena.jipipe.utils.CustomTabbedPaneUI

shouldRotateTabRuns(int, int) - Method in class org.hkijena.jipipe.utils.CustomTabbedPaneUI

showCurrentFilesCollection() - Method in class org.hkijena.jipipe.ui.ijupdater.JIPipeImageJPluginManager

showDialog(Component, JIPipeGraphHistory, JIPipeGraphNode, JIPipeSlotType) - Static method in class org.hkijena.jipipe.ui.components.AddAlgorithmSlotPanel

Shows a dialog for adding slots

showDialog(Component, JIPipeDynamicParameterCollection) - Static method in class org.hkijena.jipipe.ui.components.AddDynamicParameterPanel

Shows a dialog for adding slots

showDialog(Component, JIPipeGraphHistory, JIPipeDataSlot) - Static method in class org.hkijena.jipipe.ui.components.EditAlgorithmSlotPanel

Shows a dialog for adding slots

showDialog(Component, JIPipeDataTypePicker.Mode, Set<JIPipeDataInfo>) - Static method in class org.hkijena.jipipe.ui.components.JIPipeDataTypePicker

Shows a dialog to pick traits

showDialog(Component, String, Set<String>) - Static method in class org.hkijena.jipipe.ui.components.JIPipeIconPickerDialog

Picks an icon name using a dialog

showDialog(Component, JIPipeNodeInfoPicker.Mode, Set<JIPipeNodeInfo>) - Static method in class org.hkijena.jipipe.ui.components.JIPipeNodeInfoPicker

Shows a dialog to pick traits

showDialog(Component, Set<JIPipeGraphNode>, JIPipeGraphNode, String) - Static method in class org.hkijena.jipipe.ui.components.PickNodeDialog

Shows a dialog for selecting an algorithm

showDialog(Component, JIPipeWorkbench, Class<? extends JIPipeParameterGeneratorUI>) - Static method in class org.hkijena.jipipe.ui.parameters.JIPipeParameterGeneratorUI

Shows a dialog that allows the user to setup the generator

showDialog(JIPipeWorkbench, Path, Set<JIPipeDependency>, Set<JIPipeImageJUpdateSiteDependency>) - Static method in class org.hkijena.jipipe.ui.project.UnsatisfiedDependenciesDialog

Shows the dialog

showPickerDialog(Component, JIPipeParameterTree, String) - Static method in class org.hkijena.jipipe.ui.components.ParameterTreeUI

Picks a node or parameter

showSplash(Context) - Method in class org.hkijena.jipipe.ui.components.SplashScreen

shutdown() - Method in class org.hkijena.jipipe.api.JIPipeFixedThreadPool

Forces the thread pool to shut down

SimpleFileAnnotationGenerator - Class in org.hkijena.jipipe.extensions.filesystem.algorithms

Generates annotations from filenames

SimpleFileAnnotationGenerator(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.SimpleFileAnnotationGenerator

New instance

SimpleFileAnnotationGenerator(SimpleFileAnnotationGenerator) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.SimpleFileAnnotationGenerator

Copies the algorithm

SimpleFolderAnnotationGenerator - Class in org.hkijena.jipipe.extensions.filesystem.algorithms

Algorithm that generates annotations from folder names

SimpleFolderAnnotationGenerator(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.SimpleFolderAnnotationGenerator

Creates a new instance

SimpleFolderAnnotationGenerator(SimpleFolderAnnotationGenerator) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.SimpleFolderAnnotationGenerator

Copies the algorithm

SimpleIteratingPythonScriptAlgorithm - Class in org.hkijena.jipipe.extensions.python

An algorithm that allows to run Python code

SimpleIteratingPythonScriptAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.python.SimpleIteratingPythonScriptAlgorithm

Creates a new instance

SimpleIteratingPythonScriptAlgorithm(SimpleIteratingPythonScriptAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.python.SimpleIteratingPythonScriptAlgorithm

Creates a copy

simpleOMEExport(ImagePlus, Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.OMEImageData

Copy of the run method in Exporter, as the plugin code really depends on some UI interaction We also simplified the code, as JIPipe outputs very standard files

SimplePathAnnotationGenerator - Class in org.hkijena.jipipe.extensions.filesystem.algorithms

Algorithm that generates annotations from folder names

SimplePathAnnotationGenerator(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.SimplePathAnnotationGenerator

Creates a new instance

SimplePathAnnotationGenerator(SimplePathAnnotationGenerator) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.SimplePathAnnotationGenerator

Copies the algorithm

SingleFileSelectionPanel - Class in org.hkijena.jipipe.ui.ijupdater

Opened when selecting one file

SingleFileSelectionPanel(JIPipeWorkbench, ManagerUI, FileObject) - Constructor for class org.hkijena.jipipe.ui.ijupdater.SingleFileSelectionPanel

SingleImageJAlgorithmRun - Class in org.hkijena.jipipe.api.compat

Settings class used for a single algorithm run

SingleImageJAlgorithmRun(JIPipeGraphNode) - Constructor for class org.hkijena.jipipe.api.compat.SingleImageJAlgorithmRun

SingleImageJAlgorithmRun.Serializer - Class in org.hkijena.jipipe.api.compat

Serializes the run

SingleSelectionModel - Class in org.hkijena.jipipe.ui.components

Selection model for single selections

SingleSelectionModel() - Constructor for class org.hkijena.jipipe.ui.components.SingleSelectionModel

SliceIndex - Class in org.hkijena.jipipe.extensions.imagejdatatypes.util

Helper class that identifies an image slice.

SliceIndex(int, int, int) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.util.SliceIndex

Initializes a slice index

SliceIndex() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.util.SliceIndex

Initializes a slice index where all values are -1

SliceIndex(SliceIndex) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.util.SliceIndex

Creates a copy

SLOT_PARAMETERS - Static variable in class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

SlotConfigurationHistorySnapshot - Class in org.hkijena.jipipe.api.history

SlotConfigurationHistorySnapshot(JIPipeGraphNode, String) - Constructor for class org.hkijena.jipipe.api.history.SlotConfigurationHistorySnapshot

SlotMapParameterCollection - Class in org.hkijena.jipipe.extensions.parameters.collections

Parameter that holds a value for each data slot

SlotMapParameterCollection(Class<?>, JIPipeGraphNode, Supplier<Object>, boolean) - Constructor for class org.hkijena.jipipe.extensions.parameters.collections.SlotMapParameterCollection

Creates a new instance

slotName() - Method in class org.hkijena.jipipe.api.nodes.DefaultJIPipeInputSlot

slotName() - Method in class org.hkijena.jipipe.api.nodes.DefaultJIPipeOutputSlot

SlotsChangedEvent - Class in org.hkijena.jipipe.api.events

Triggered when a JIPipeSlotConfiguration was changed

SlotsChangedEvent(JIPipeSlotConfiguration) - Constructor for class org.hkijena.jipipe.api.events.SlotsChangedEvent

Creates a new instance

SobelEdgeDetectorAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.edge

Wrapper around ImageProcessor

SobelEdgeDetectorAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.edge.SobelEdgeDetectorAlgorithm

Instantiates a new node type.

SobelEdgeDetectorAlgorithm(SobelEdgeDetectorAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.edge.SobelEdgeDetectorAlgorithm

Instantiates a new node type.

SortAndExtractRoiByStatisticsAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

Wrapper around RoiManager

SortAndExtractRoiByStatisticsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SortAndExtractRoiByStatisticsAlgorithm

Instantiates a new node type.

SortAndExtractRoiByStatisticsAlgorithm(SortAndExtractRoiByStatisticsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SortAndExtractRoiByStatisticsAlgorithm

Instantiates a new node type.

SortAscendingColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting

Sorts the items ascending

SortAscendingColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.SortAscendingColumnOperation

SortDescendingColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting

Sorts the items ascending

SortDescendingColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.SortDescendingColumnOperation

SortOrder - Enum in org.hkijena.jipipe.extensions.parameters.util

Sort orders

SortTableAlgorithm - Class in org.hkijena.jipipe.extensions.tables.algorithms

Algorithm that integrates columns

SortTableAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.SortTableAlgorithm

Creates a new instance

SortTableAlgorithm(SortTableAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.SortTableAlgorithm

Creates a copy

SplashScreen - Class in org.hkijena.jipipe.ui.components

SplashScreen() - Constructor for class org.hkijena.jipipe.ui.components.SplashScreen

splitAll() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData

Splits all ShapeRoi that consist of multiple sub-Roi into their individual sub-Roi.

splitBy(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Splits this table into multiple tables according to an internal or external column

SplitByAnnotation - Class in org.hkijena.jipipe.extensions.annotation.algorithms

Algorithm that splits the input data by a specified annotation

SplitByAnnotation(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.SplitByAnnotation

SplitByAnnotation(SplitByAnnotation) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.SplitByAnnotation

Copies the algorithm

SplitByAnnotationScript - Class in org.hkijena.jipipe.extensions.annotation.algorithms

Algorithm that annotates all data with the same annotation

SplitByAnnotationScript(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.SplitByAnnotationScript

SplitByAnnotationScript(SplitByAnnotationScript) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.SplitByAnnotationScript

Copies the algorithm

SplitChannelsAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color

Wrapper around ChannelArranger

SplitChannelsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SplitChannelsAlgorithm

Instantiates a new node type.

SplitChannelsAlgorithm(SplitChannelsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SplitChannelsAlgorithm

Creates a copy

SplitRoiAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

Wrapper around RoiManager

SplitRoiAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SplitRoiAlgorithm

Instantiates a new node type.

SplitRoiAlgorithm(SplitRoiAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SplitRoiAlgorithm

Instantiates a new node type.

SplitTableByColumnsAlgorithm - Class in org.hkijena.jipipe.extensions.tables.algorithms

Algorithm that integrates columns

SplitTableByColumnsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.SplitTableByColumnsAlgorithm

Creates a new instance

SplitTableByColumnsAlgorithm(SplitTableByColumnsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.SplitTableByColumnsAlgorithm

Creates a copy

SplitTableIntoColumnsAlgorithm - Class in org.hkijena.jipipe.extensions.tables.algorithms

Algorithm that integrates columns

SplitTableIntoColumnsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.SplitTableIntoColumnsAlgorithm

Creates a new instance

SplitTableIntoColumnsAlgorithm(SplitTableIntoColumnsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.SplitTableIntoColumnsAlgorithm

Creates a copy

SqrtColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting

Applies a square root function

SqrtColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.SqrtColumnOperation

SquareColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting

Applies a square function

SquareColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.SquareColumnOperation

StackedBarCategoryPlotData - Class in org.hkijena.jipipe.extensions.plots.datatypes

Generates a bar category plot

StackedBarCategoryPlotData() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.StackedBarCategoryPlotData

Creates a new instance

StackedBarCategoryPlotData(StackedBarCategoryPlotData) - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.StackedBarCategoryPlotData

Creates a copy

StackInverterAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions

Wrapper around ImageProcessor

StackInverterAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackInverterAlgorithm

Instantiates a new node type.

StackInverterAlgorithm(StackInverterAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackInverterAlgorithm

Instantiates a new node type.

StackMergerAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions

Wrapper around ImageProcessor

StackMergerAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackMergerAlgorithm

Instantiates a new node type.

StackMergerAlgorithm(StackMergerAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackMergerAlgorithm

Instantiates a new node type.

StackSplitterAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions

Wrapper around ChannelArranger

StackSplitterAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackSplitterAlgorithm

Instantiates a new node type.

StackSplitterAlgorithm(StackSplitterAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackSplitterAlgorithm

Creates a copy

StackTo2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions

Wrapper around ImageProcessor

StackTo2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackTo2DAlgorithm

Instantiates a new node type.

StackTo2DAlgorithm(StackTo2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackTo2DAlgorithm

Instantiates a new node type.

StackToMontageAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions

Implementation of MontageMaker

StackToMontageAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm

StackToMontageAlgorithm(StackToMontageAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm

stageActivateUpdateSite(UpdateSite) - Method in class org.hkijena.jipipe.ui.ijupdater.JIPipeImageJPluginManager

StandardParametersExtension - Class in org.hkijena.jipipe.extensions.parameters

Provides some standard parameters

StandardParametersExtension() - Constructor for class org.hkijena.jipipe.extensions.parameters.StandardParametersExtension

StandardSettingsExtension - Class in org.hkijena.jipipe.extensions.settings

Extension that provides all JIPipe included settings sheets

StandardSettingsExtension() - Constructor for class org.hkijena.jipipe.extensions.settings.StandardSettingsExtension

start(int, int) - Method in class org.hkijena.jipipe.ui.grapheditor.connections.NonCollidingRectangularLineDrawer

start(int, int) - Method in class org.hkijena.jipipe.ui.grapheditor.connections.RectangularLineDrawer

startAndJoin(Thread[]) - Static method in class org.hkijena.jipipe.extensions.imagejalgorithms.utils.Hough_Circle

Start all given threads and wait on each of them until all are done.

startRun() - Method in class org.hkijena.jipipe.ui.running.JIPipeRunExecuterUI

Starts the run

startTransform() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.utils.Hough_Circle

State(LocalDateTime, String) - Constructor for class org.hkijena.jipipe.api.JIPipeProjectCache.State

Creates a new instance

StateSerializer() - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm.StateSerializer

StatisticalCategoryPlotData - Class in org.hkijena.jipipe.extensions.plots.datatypes

Contains data for statistical plots.

StatisticalCategoryPlotData() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.StatisticalCategoryPlotData

Creates a new instance

StatisticalCategoryPlotData(StatisticalCategoryPlotData) - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.StatisticalCategoryPlotData

Creates a copy

StatisticsAverageIntegratingColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.integrating

Implements calculating the average

StatisticsAverageIntegratingColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsAverageIntegratingColumnOperation

StatisticsCountIntegratingColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.integrating

Implements calculating the number of rows

StatisticsCountIntegratingColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsCountIntegratingColumnOperation

StatisticsCountNonZeroIntegratingColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.integrating

Implements counting non-zero elements

StatisticsCountNonZeroIntegratingColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsCountNonZeroIntegratingColumnOperation

StatisticsCumulativeSumColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.integrating

Implements calculating the cumulative sum Y_0=X_0; Y_i=Y_{i-1}+X_i

StatisticsCumulativeSumColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsCumulativeSumColumnOperation

StatisticsGeometricMeanIntegratingColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.integrating

Implements calculating the geometric mean

StatisticsGeometricMeanIntegratingColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsGeometricMeanIntegratingColumnOperation

StatisticsKurtosisIntegratingColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.integrating

Implements calculating the kurtosis

StatisticsKurtosisIntegratingColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsKurtosisIntegratingColumnOperation

StatisticsMaxIntegratingColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.integrating

Implements calculating the max value

StatisticsMaxIntegratingColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsMaxIntegratingColumnOperation

StatisticsMedianIntegratingColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.integrating

Implements calculating the median value

StatisticsMedianIntegratingColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsMedianIntegratingColumnOperation

StatisticsMinIntegratingColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.integrating

Implements calculating the min value

StatisticsMinIntegratingColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsMinIntegratingColumnOperation

StatisticsSkewnessIntegratingColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.integrating

Implements calculating the skewness

StatisticsSkewnessIntegratingColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsSkewnessIntegratingColumnOperation

StatisticsStandardDeviationIntegratingColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.integrating

Implements calculating the standard deviation

StatisticsStandardDeviationIntegratingColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsStandardDeviationIntegratingColumnOperation

StatisticsVarianceIntegratingColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.integrating

Implements calculating the variance

StatisticsVarianceIntegratingColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsVarianceIntegratingColumnOperation

StatisticsWeightedSumColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.integrating

Implements calculating the weighted sum sum_{i=1,2,...}

StatisticsWeightedSumColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsWeightedSumColumnOperation

store(JIPipeAlgorithm, JIPipeProjectCache.State, JIPipeDataSlot) - Method in class org.hkijena.jipipe.api.JIPipeProjectCache

Stores data into the cache

StringAndStringOrDoublePair - Class in org.hkijena.jipipe.extensions.parameters.pairs

A parameter that renames an integer into another integer

StringAndStringOrDoublePair() - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.StringAndStringOrDoublePair

Creates a new instance

StringAndStringOrDoublePair(StringAndStringOrDoublePair) - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.StringAndStringOrDoublePair

Creates a copy

StringAndStringOrDoublePair.List - Class in org.hkijena.jipipe.extensions.parameters.pairs

A collection of multiple StringAndStringOrDoublePair

StringAndStringPair - Class in org.hkijena.jipipe.extensions.parameters.pairs

A parameter that renames an integer into another integer

StringAndStringPair() - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.StringAndStringPair

Creates a new instance

StringAndStringPair(StringAndStringPair) - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.StringAndStringPair

Creates a copy

StringAndStringPair.List - Class in org.hkijena.jipipe.extensions.parameters.pairs

A collection of multiple StringAndStringPair

StringAndStringPredicatePair - Class in org.hkijena.jipipe.extensions.parameters.pairs

A parameter that renames an integer into another integer

StringAndStringPredicatePair() - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.StringAndStringPredicatePair

Creates a new instance

StringAndStringPredicatePair(StringAndStringPredicatePair) - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.StringAndStringPredicatePair

Creates a copy

StringAndStringPredicatePair.List - Class in org.hkijena.jipipe.extensions.parameters.pairs

A collection of multiple StringAndStringPredicatePair

StringArrayColumnToTableConverter - Class in org.hkijena.jipipe.extensions.tables

Converts a column to a table

StringArrayColumnToTableConverter() - Constructor for class org.hkijena.jipipe.extensions.tables.StringArrayColumnToTableConverter

StringArrayTableColumn - Class in org.hkijena.jipipe.extensions.tables.datatypes

TableColumn that contains doubles.

StringArrayTableColumn(String[], String) - Constructor for class org.hkijena.jipipe.extensions.tables.datatypes.StringArrayTableColumn

Creates a new instance

StringData - Class in org.hkijena.jipipe.extensions.strings

A data type that contains a string

StringData(String) - Constructor for class org.hkijena.jipipe.extensions.strings.StringData

StringData(StringData) - Constructor for class org.hkijena.jipipe.extensions.strings.StringData

StringDataConverter - Class in org.hkijena.jipipe.extensions.strings

StringDataConverter(Class<? extends JIPipeData>) - Constructor for class org.hkijena.jipipe.extensions.strings.StringDataConverter

StringFilterAndSortOrderPair - Class in org.hkijena.jipipe.extensions.parameters.pairs

A pair of StringPredicate and SortOrder

StringFilterAndSortOrderPair() - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.StringFilterAndSortOrderPair

Creates a new instance

StringFilterAndSortOrderPair(StringFilterAndSortOrderPair) - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.StringFilterAndSortOrderPair

Creates a copy

StringFilterAndSortOrderPair.List - Class in org.hkijena.jipipe.extensions.parameters.pairs

A collection of multiple StringFilterAndSortOrderPair

StringFilterAndStringOrDoubleFilterPair - Class in org.hkijena.jipipe.extensions.parameters.pairs

Pair from StringPredicate to StringOrDoublePredicate

StringFilterAndStringOrDoubleFilterPair() - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.StringFilterAndStringOrDoubleFilterPair

Creates a new instance

StringFilterAndStringOrDoubleFilterPair(StringFilterAndStringOrDoubleFilterPair) - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.StringFilterAndStringOrDoubleFilterPair

Creates a copy

StringFilterAndStringOrDoubleFilterPair.List - Class in org.hkijena.jipipe.extensions.parameters.pairs

A collection of multiple StringFilterAndStringOrDoubleFilterPair The filters are connected via "OR"

StringFilterAndStringPair - Class in org.hkijena.jipipe.extensions.parameters.pairs

A parameter that renames a matching string into another string

StringFilterAndStringPair() - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.StringFilterAndStringPair

Creates a new instance

StringFilterAndStringPair(StringFilterAndStringPair) - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.StringFilterAndStringPair

Creates a copy

StringFilterAndStringPair.List - Class in org.hkijena.jipipe.extensions.parameters.pairs

A collection of multiple StringFilterAndStringPair

StringList - Class in org.hkijena.jipipe.extensions.parameters.primitives

A list of String

StringList() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.StringList

Creates a new empty list

StringList(StringList) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.StringList

Creates a copy

StringOrDouble - Class in org.hkijena.jipipe.extensions.parameters.primitives

Can either filter a string or a double

StringOrDouble() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.StringOrDouble

Creates a new instance

StringOrDouble(StringOrDouble) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.StringOrDouble

Copies the object

StringOrDouble.List - Class in org.hkijena.jipipe.extensions.parameters.primitives

A collection of multiple StringOrDouble The filters are connected via "OR"

StringOrDouble.Mode - Enum in org.hkijena.jipipe.extensions.parameters.primitives

Modes are that a column is picked or one is generated

StringOrDoubleParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.primitives

A parameter editor UI for StringOrDouble

StringOrDoubleParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.StringOrDoubleParameterEditorUI

StringOrDoublePredicate - Class in org.hkijena.jipipe.extensions.parameters.predicates

Can either filter a string or a double

StringOrDoublePredicate() - Constructor for class org.hkijena.jipipe.extensions.parameters.predicates.StringOrDoublePredicate

Creates a new instance

StringOrDoublePredicate(StringOrDoublePredicate) - Constructor for class org.hkijena.jipipe.extensions.parameters.predicates.StringOrDoublePredicate

Copies the object

StringOrDoublePredicate.FilterMode - Enum in org.hkijena.jipipe.extensions.parameters.predicates

Modes are that a column is picked or one is generated

StringOrDoublePredicate.List - Class in org.hkijena.jipipe.extensions.parameters.predicates

A collection of multiple StringOrDoublePredicate The filters are connected via "OR"

StringOrDoublePredicateParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.predicates

A parameter editor UI for StringOrDoublePredicate

StringOrDoublePredicateParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.predicates.StringOrDoublePredicateParameterEditorUI

StringParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.primitives

Parameter editor for String

StringParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.StringParameterEditorUI

StringParameterSettings - Annotation Type in org.hkijena.jipipe.extensions.parameters.primitives

Settings for String parameters

StringPatternExtraction - Class in org.hkijena.jipipe.extensions.parameters.patterns

A parameter that extracts a pattern from a string

StringPatternExtraction() - Constructor for class org.hkijena.jipipe.extensions.parameters.patterns.StringPatternExtraction

Creates a new instance

StringPatternExtraction(StringPatternExtraction) - Constructor for class org.hkijena.jipipe.extensions.parameters.patterns.StringPatternExtraction

Creates a copy

StringPatternExtraction.List - Class in org.hkijena.jipipe.extensions.parameters.patterns

A collection of multiple StringPatternExtraction

StringPatternExtraction.Mode - Enum in org.hkijena.jipipe.extensions.parameters.patterns

Available modes

StringPatternExtractionFunction - Class in org.hkijena.jipipe.extensions.parameters.functions

A function entry that applies pattern extraction to an String

StringPatternExtractionFunction() - Constructor for class org.hkijena.jipipe.extensions.parameters.functions.StringPatternExtractionFunction

Creates a new instance

StringPatternExtractionFunction(StringPatternExtractionFunction) - Constructor for class org.hkijena.jipipe.extensions.parameters.functions.StringPatternExtractionFunction

Creates a copy

StringPatternExtractionFunction.List - Class in org.hkijena.jipipe.extensions.parameters.functions

List of StringPatternExtractionFunction

StringPatternExtractionParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.patterns

Editor for StringPatternExtraction

StringPatternExtractionParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.patterns.StringPatternExtractionParameterEditorUI

StringPredicate - Class in org.hkijena.jipipe.extensions.parameters.predicates

A filter for path filenames that can handle multiple filter modes

StringPredicate() - Constructor for class org.hkijena.jipipe.extensions.parameters.predicates.StringPredicate

Initializes a new filter.

StringPredicate(StringPredicate.Mode, String, boolean) - Constructor for class org.hkijena.jipipe.extensions.parameters.predicates.StringPredicate

Initializes a new filter

StringPredicate(StringPredicate) - Constructor for class org.hkijena.jipipe.extensions.parameters.predicates.StringPredicate

Copies the filter

StringPredicate.List - Class in org.hkijena.jipipe.extensions.parameters.predicates

A collection of multiple StringPredicate The filters are connected via "OR"

StringPredicate.Mode - Enum in org.hkijena.jipipe.extensions.parameters.predicates

Available filter modes

StringPredicateParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.predicates

Editor for StringPredicate

StringPredicateParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.predicates.StringPredicateParameterEditorUI

StringResultDataSlotRowUI - Class in org.hkijena.jipipe.extensions.strings

StringResultDataSlotRowUI(JIPipeProjectWorkbench, JIPipeDataSlot, JIPipeExportedDataTable.Row) - Constructor for class org.hkijena.jipipe.extensions.strings.StringResultDataSlotRowUI

Creates a new UI

StringsExtension - Class in org.hkijena.jipipe.extensions.strings

Provides data types dor handling strings

StringsExtension() - Constructor for class org.hkijena.jipipe.extensions.strings.StringsExtension

StringUtils - Class in org.hkijena.jipipe.utils

Utilities for strings

STROKE_DEFAULT - Static variable in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

STROKE_HIGHLIGHT - Static variable in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

STROKE_MARQUEE - Static variable in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

STROKE_SELECTION - Static variable in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

STROKE_UNIT - Static variable in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

styleText(boolean, boolean, boolean) - Method in class org.hkijena.jipipe.ui.components.FancyTextField

SugiyamaGraphAutoLayoutMethod - Class in org.hkijena.jipipe.ui.grapheditor.layout

Applies auto-layout according to Sugiyama et al.

SugiyamaGraphAutoLayoutMethod() - Constructor for class org.hkijena.jipipe.ui.grapheditor.layout.SugiyamaGraphAutoLayoutMethod

supportsImageJData(Class<?>) - Method in class org.hkijena.jipipe.api.registries.JIPipeImageJAdapterRegistry

Returns true if the ImageJ data type is supported

supportsJIPipeData(Class<? extends JIPipeData>) - Method in class org.hkijena.jipipe.api.registries.JIPipeImageJAdapterRegistry

Returns true if the JIPipe data type is supported

supportsParallelization() - Method in class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm

supportsParallelization() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeParallelizedAlgorithm

Indicates to the algorithm base implementation if parallelization is supported.

supportsParallelization() - Method in class org.hkijena.jipipe.api.nodes.JIPipeSimpleIteratingAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.BoxFilter2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.BoxFilter3DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.GaussianBlur2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.GaussianBlur3DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurFilter2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurFilter3DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurGreyscale8U2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurRGB2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.ArrangeChannelsAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.InvertColorsAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.MergeChannelsAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SplitChannelsAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast.CLAHEContrastEnhancer

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast.IlluminationCorrection2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convolve.Convolve2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackInverterAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackMergerAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackSplitterAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackTo2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.ZProjectorAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.edge.SobelEdgeDetectorAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.FrangiVesselnessFeatures

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.LocalMaxima2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.MeijeringVesselness2DFeatures

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.fft.FFT2DForwardTransform

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.fft.FFT2DInverseTransform

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.fft.FFT2DSwapQuadrants

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.generate.GenerateStructureElementAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyDistanceTransform2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyMath2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.DivideByMaximumAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.Hessian2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ImageCalculator2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMaximumFilter2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMaximumFilter3DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMinimumFilter2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMinimumFilter3DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalVarianceFilter2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalVarianceFilter3DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.RemoveNaNFilter2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.Morphology2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyBinary2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyFillHoles2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyInternalGradient2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyOutline2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologySkeletonize2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.AddNoise2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.DespeckleFilter2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.RemoveOutliersFilter2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.sharpen.LaplacianSharpen2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.AutoThreshold2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.BrightSpotsSegmentation2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.FastHoughSegmentation2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HessianSegmentation2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.InternalGradientSegmentation2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.ManualThreshold16U2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.ManualThreshold8U2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformCrop2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformFlip2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformRotate2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale3DAlgorithm

switchToContent(Component) - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane

Switches to the provided content

switchToLastTab() - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane

Switches the the last tab.

T

TAB_APPLICATION_SETTINGS - Static variable in class org.hkijena.jipipe.ui.JIPipeProjectWorkbench

TAB_COMPARTMENT_EDITOR - Static variable in class org.hkijena.jipipe.ui.JIPipeProjectWorkbench

TAB_INTRODUCTION - Static variable in class org.hkijena.jipipe.ui.JIPipeProjectWorkbench

TAB_PLUGIN_MANAGER - Static variable in class org.hkijena.jipipe.ui.JIPipeProjectWorkbench

TAB_PLUGIN_VALIDITY_CHECK - Static variable in class org.hkijena.jipipe.ui.JIPipeProjectWorkbench

TAB_PROJECT_SETTINGS - Static variable in class org.hkijena.jipipe.ui.JIPipeProjectWorkbench

TAB_VALIDITY_CHECK - Static variable in class org.hkijena.jipipe.ui.JIPipeProjectWorkbench

tabAreaBackground - Variable in class org.hkijena.jipipe.utils.CustomTabbedPaneUI

TabbedPaneLayout() - Constructor for class org.hkijena.jipipe.utils.CustomTabbedPaneUI.TabbedPaneLayout

TableColumn - Interface in org.hkijena.jipipe.extensions.tables.datatypes

An JIPipeData type that represents a column.

TableColumnConversionParameter - Class in org.hkijena.jipipe.extensions.tables.parameters.enums

Enum-like parameter that allows the selection of a ConvertingColumnOperation.

TableColumnConversionParameter() - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnConversionParameter

Creates a new instance

TableColumnConversionParameter(TableColumnConversionParameter) - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnConversionParameter

Creates a copy

TableColumnGeneratorParameter - Class in org.hkijena.jipipe.extensions.tables.parameters.enums

A parameter that allows the user to setup a table column generator

TableColumnGeneratorParameter() - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnGeneratorParameter

Creates a new instance

TableColumnGeneratorParameter(TableColumnGeneratorParameter) - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnGeneratorParameter

Creates a copy

TableColumnGeneratorParameterEditorUI - Class in org.hkijena.jipipe.extensions.tables.parameters.enums

A parameter editor UI that works for all enumerations

TableColumnGeneratorParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnGeneratorParameterEditorUI

TableColumnGeneratorProcessor - Class in org.hkijena.jipipe.extensions.tables.parameters.processors

Processor-like parameter that maps a column generator to a string

TableColumnGeneratorProcessor() - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.processors.TableColumnGeneratorProcessor

Creates a new instance

TableColumnGeneratorProcessor(TableColumnGeneratorProcessor) - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.processors.TableColumnGeneratorProcessor

Creates a copy

TableColumnGeneratorProcessorParameterList - Class in org.hkijena.jipipe.extensions.tables.parameters.collections

TableColumnGeneratorProcessorParameterList() - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.collections.TableColumnGeneratorProcessorParameterList

Creates a new instance

TableColumnGeneratorProcessorParameterList(TableColumnGeneratorProcessorParameterList) - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.collections.TableColumnGeneratorProcessorParameterList

Creates a copy

TableColumnIntegrationParameter - Class in org.hkijena.jipipe.extensions.tables.parameters.enums

Enum-like parameter that allows the selection of a IntegratingColumnOperation.

TableColumnIntegrationParameter() - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnIntegrationParameter

Creates a new instance

TableColumnIntegrationParameter(TableColumnIntegrationParameter) - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnIntegrationParameter

Creates a copy

TableColumnReference - Class in org.hkijena.jipipe.extensions.tables

A table column that references a column within a ResultsTableData

TableColumnReference(ResultsTableData, int) - Constructor for class org.hkijena.jipipe.extensions.tables.TableColumnReference

TableColumnSourceParameter - Class in org.hkijena.jipipe.extensions.tables.parameters

Parameter that acts as source (via matching a column) or a generator

TableColumnSourceParameter() - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.TableColumnSourceParameter

Creates a new instance

TableColumnSourceParameter(TableColumnSourceParameter) - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.TableColumnSourceParameter

Copies the object

TableColumnSourceParameter.Mode - Enum in org.hkijena.jipipe.extensions.tables.parameters

Modes are that a column is picked or one is generated

TableColumnSourceParameterEditorUI - Class in org.hkijena.jipipe.extensions.tables.parameters

A parameter editor UI that works for all enumerations

TableColumnSourceParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.TableColumnSourceParameterEditorUI

TableNodeTypeCategory - Class in org.hkijena.jipipe.api.nodes.categories

TableNodeTypeCategory() - Constructor for class org.hkijena.jipipe.api.nodes.categories.TableNodeTypeCategory

TablesExtension - Class in org.hkijena.jipipe.extensions.tables

Standard set of table operations

TablesExtension() - Constructor for class org.hkijena.jipipe.extensions.tables.TablesExtension

TablesFromScript - Class in org.hkijena.jipipe.extensions.tables.algorithms

Algorithm that annotates all data with the same annotation

TablesFromScript(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.TablesFromScript

TablesFromScript(TablesFromScript) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.TablesFromScript

Copies the algorithm

TableToCircularROIAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

Wrapper around RoiManager

TableToCircularROIAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToCircularROIAlgorithm

Instantiates a new node type.

TableToCircularROIAlgorithm(TableToCircularROIAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToCircularROIAlgorithm

Creates a copy

TableToRectangularROIAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

Wrapper around RoiManager

TableToRectangularROIAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm

Instantiates a new node type.

TableToRectangularROIAlgorithm(TableToRectangularROIAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm

Creates a copy

TableToRectangularROIAlgorithm.Anchor - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

Available anchors

TableToRectangularROIAlgorithm.Mode - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

TableUtils - Class in org.hkijena.jipipe.utils

Utilities for TableModel

TemplateMatchingMethod - Enum in org.hkijena.jipipe.extensions.ijmultitemplatematching

TemplateProjectListCellRenderer - Class in org.hkijena.jipipe.ui.components

Renders a recent project

TemplateProjectListCellRenderer() - Constructor for class org.hkijena.jipipe.ui.components.TemplateProjectListCellRenderer

TemporaryFileDataSource - Class in org.hkijena.jipipe.extensions.filesystem.datasources

TemporaryFileDataSource(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.datasources.TemporaryFileDataSource

TemporaryFileDataSource(TemporaryFileDataSource) - Constructor for class org.hkijena.jipipe.extensions.filesystem.datasources.TemporaryFileDataSource

TemporaryFolderDataSource - Class in org.hkijena.jipipe.extensions.filesystem.datasources

TemporaryFolderDataSource(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.datasources.TemporaryFolderDataSource

TemporaryFolderDataSource(TemporaryFolderDataSource) - Constructor for class org.hkijena.jipipe.extensions.filesystem.datasources.TemporaryFolderDataSource

test(Double) - Method in class org.hkijena.jipipe.extensions.parameters.predicates.DoublePredicate

test(Path) - Method in class org.hkijena.jipipe.extensions.parameters.predicates.PathPredicate

test(Object) - Method in class org.hkijena.jipipe.extensions.parameters.predicates.StringOrDoublePredicate.List

Returns true if one or more filters report that the string matches

test(Object) - Method in class org.hkijena.jipipe.extensions.parameters.predicates.StringOrDoublePredicate

test(String) - Method in class org.hkijena.jipipe.extensions.parameters.predicates.StringPredicate.List

Returns true if one or more filters report that the string matches

test(String) - Method in class org.hkijena.jipipe.extensions.parameters.predicates.StringPredicate

test(String) - Method in class org.hkijena.jipipe.ui.components.SearchTextField

tighten(PointRange, PointRange) - Static method in class org.hkijena.jipipe.utils.PointRange

Modifies the center points, so they are closer together.

TO_2D_CONVERSION - Static variable in class org.hkijena.jipipe.extensions.imagejalgorithms.ImageJAlgorithmsExtension

Conversion rules convert higher-dimensional data to their 2D counterparts

TO_3D_CONVERSION - Static variable in class org.hkijena.jipipe.extensions.imagejalgorithms.ImageJAlgorithmsExtension

Conversion rules convert data to their 3D counterparts

TO_COLOR_CONVERSION - Static variable in class org.hkijena.jipipe.extensions.imagejalgorithms.ImageJAlgorithmsExtension

Conversion rules that convert color types into colored images

TO_GRAYSCALE32F_CONVERSION - Static variable in class org.hkijena.jipipe.extensions.imagejalgorithms.ImageJAlgorithmsExtension

Conversion rules that convert color types into colored images

TO_GRAYSCALE_CONVERSION - Static variable in class org.hkijena.jipipe.extensions.imagejalgorithms.ImageJAlgorithmsExtension

Conversion rules that convert color types into greyscale

toHtmlElement(JIPipeDependency) - Static method in interface org.hkijena.jipipe.JIPipeDependency

Exports the dependency to an HTML element (without the root tag)

toJson(JsonGenerator) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

toJson(JsonGenerator) - Method in interface org.hkijena.jipipe.api.data.JIPipeSlotConfiguration

Saves this configuration to JSON.

toJson(JsonGenerator) - Method in class org.hkijena.jipipe.api.JIPipeProject

Writes the project to JSON

toJson(JsonGenerator) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Saves this algorithm to JSON.

toMask(Margin, boolean, boolean, int) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData

Generates a mask image from pure ROI data.

ToNumericColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting

Sorts the items ascending

ToNumericColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.ToNumericColumnOperation

ToolsExtension - Class in org.hkijena.jipipe.extensions.tools

Extension containing some additional tools

ToolsExtension() - Constructor for class org.hkijena.jipipe.extensions.tools.ToolsExtension

TooltipUtils - Class in org.hkijena.jipipe.utils

Utilities that generate tooltips or other text from JIPipe data data structures

toParameterString(Object...) - Static method in class org.hkijena.jipipe.extensions.imagejalgorithms.utils.ImageJUtils

Converts a list of parameters into a space-delimited

toPython() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Converts this table into its equivalent Python form (as dictionary of columns)

toString() - Method in class org.hkijena.jipipe.api.data.JIPipeAnnotation

toString() - Method in class org.hkijena.jipipe.api.data.JIPipeDataInfo

toString() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

toString() - Method in exception org.hkijena.jipipe.api.exceptions.UserFriendlyNullPointerException

toString() - Method in exception org.hkijena.jipipe.api.exceptions.UserFriendlyRuntimeException

toString() - Method in class org.hkijena.jipipe.api.JIPipeAuthorMetadata.List

toString() - Method in class org.hkijena.jipipe.api.JIPipeAuthorMetadata

toString() - Method in class org.hkijena.jipipe.api.JIPipeProjectCache.State

toString() - Method in class org.hkijena.jipipe.api.JIPipeRunnerSubStatus

toString() - Method in class org.hkijena.jipipe.api.JIPipeValidityReport.Message

toString() - Method in enum org.hkijena.jipipe.api.nodes.JIPipeColumnGrouping

toString() - Method in class org.hkijena.jipipe.api.nodes.JIPipeDataBatchKey

toString() - Method in class org.hkijena.jipipe.api.registries.JIPipeJavaNodeRegistrationTask

toString() - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageData

toString() - Method in class org.hkijena.jipipe.extensions.filesystem.dataypes.PathData

toString() - Method in enum org.hkijena.jipipe.extensions.ijmultitemplatematching.TemplateMatchingMethod

toString() - Method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.HyperstackDimension

toString() - Method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm.Anchor

toString() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ImagePlusData

toString() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.OMEImageData

toString() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData

toString() - Method in enum org.hkijena.jipipe.extensions.imagejdatatypes.util.CalibrationMode

toString() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.SliceIndex

toString() - Method in class org.hkijena.jipipe.extensions.multiparameters.datatypes.ParametersData

toString() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameter

toString() - Method in class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2D

toString() - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameter

toString() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.Pair

toString() - Method in class org.hkijena.jipipe.extensions.parameters.patterns.StringPatternExtraction

toString() - Method in class org.hkijena.jipipe.extensions.parameters.predicates.DoublePredicate

toString() - Method in class org.hkijena.jipipe.extensions.parameters.predicates.PathPredicate

toString() - Method in class org.hkijena.jipipe.extensions.parameters.predicates.StringPredicate

toString() - Method in class org.hkijena.jipipe.extensions.parameters.references.JIPipeAlgorithmIconRef

toString() - Method in class org.hkijena.jipipe.extensions.parameters.references.JIPipeDataInfoRef

toString() - Method in class org.hkijena.jipipe.extensions.parameters.references.JIPipeNodeInfoRef

toString() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData

toString() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotDataSeries

toString() - Method in class org.hkijena.jipipe.extensions.strings.StringData

toString() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.AnnotationTableData

toString() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

toString() - Method in class org.hkijena.jipipe.ui.grapheditor.layout.MSTGraphAutoLayoutMethod.Edge

toString() - Method in class org.hkijena.jipipe.ui.grapheditor.layout.MSTGraphAutoLayoutMethod.Node

toString() - Method in class org.hkijena.jipipe.utils.MacroFlag

toString() - Method in class org.hkijena.jipipe.utils.MacroSetting

toUpdateSite() - Method in class org.hkijena.jipipe.JIPipeImageJUpdateSiteDependency

TransformCrop2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform

Wrapper around ImageProcessor

TransformCrop2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformCrop2DAlgorithm

Instantiates a new node type.

TransformCrop2DAlgorithm(TransformCrop2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformCrop2DAlgorithm

Instantiates a new node type.

TransformEqualCanvasSize2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform

TransformEqualCanvasSize2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformEqualCanvasSize2DAlgorithm

TransformEqualCanvasSize2DAlgorithm(TransformEqualCanvasSize2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformEqualCanvasSize2DAlgorithm

TransformExpandCanvas2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform

TransformExpandCanvas2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformExpandCanvas2DAlgorithm

TransformExpandCanvas2DAlgorithm(TransformExpandCanvas2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformExpandCanvas2DAlgorithm

TransformFlip2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform

Wrapper around ImageProcessor

TransformFlip2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformFlip2DAlgorithm

Instantiates a new node type.

TransformFlip2DAlgorithm(TransformFlip2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformFlip2DAlgorithm

Instantiates a new node type.

TransformFlip2DAlgorithm.FlipMode - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform

Available ways to flip an image

TransformRotate2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform

Wrapper around ImageProcessor

TransformRotate2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformRotate2DAlgorithm

Instantiates a new node type.

TransformRotate2DAlgorithm(TransformRotate2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformRotate2DAlgorithm

Instantiates a new node type.

TransformRotate2DAlgorithm.RotationMode - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform

Available ways to flip an image

TransformScale2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform

Wrapper around ImageProcessor

TransformScale2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale2DAlgorithm

Instantiates a new node type.

TransformScale2DAlgorithm(TransformScale2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale2DAlgorithm

Instantiates a new node type.

TransformScale3DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform

Wrapper around ImageProcessor

TransformScale3DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale3DAlgorithm

Instantiates a new node type.

TransformScale3DAlgorithm(TransformScale3DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale3DAlgorithm

Instantiates a new node type.

TRANSPARENT - Static variable in class org.hkijena.jipipe.utils.ModernMetalTheme

traverseAlgorithms() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Traverses the graph in topological order.

traverseSlots() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Traverses the graph in topological order.

tryAutoRun(boolean, JIPipeTestBenchSettings, Consumer<JIPipeTestBench>) - Method in class org.hkijena.jipipe.ui.grapheditor.settings.JIPipeTestBenchSetupUI

Attempts to setup and run the quick run automatically and run a function when finished

tryDequeue() - Method in class org.hkijena.jipipe.ui.running.JIPipeRunnerQueue

Attempts to run a scheduled run

tryGetIntegers() - Method in class org.hkijena.jipipe.extensions.parameters.generators.IntegerRange

Generates the list of integers based on the value.

trySetInputSlotOrder(List<String>) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

Sets the input slot order.

trySetOutputSlotOrder(List<String>) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

Sets the output slot order.

U

UI_PADDING - Static variable in class org.hkijena.jipipe.utils.UIUtils

uiImportParameterFromGraph(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.multiparameters.datasources.GeneratedParameters

UIPlotDataSeriesColumnEnum - Class in org.hkijena.jipipe.extensions.plots.parameters

Parameter that contains one selected PlotDataSeries item.

UIPlotDataSeriesColumnEnum() - Constructor for class org.hkijena.jipipe.extensions.plots.parameters.UIPlotDataSeriesColumnEnum

UIPlotDataSeriesColumnEnumParameterEditorUI - Class in org.hkijena.jipipe.extensions.plots.parameters

Works for TableColumn.

UIPlotDataSeriesColumnEnumParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.plots.parameters.UIPlotDataSeriesColumnEnumParameterEditorUI

UIUtils - Class in org.hkijena.jipipe.utils

Utils for UI

UIUtils() - Constructor for class org.hkijena.jipipe.utils.UIUtils

UltimateErodedPoints2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary

Wrapper around EDM

UltimateErodedPoints2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary.UltimateErodedPoints2DAlgorithm

Instantiates a new node type.

UltimateErodedPoints2DAlgorithm(UltimateErodedPoints2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary.UltimateErodedPoints2DAlgorithm

Instantiates a new node type.

undo() - Method in class org.hkijena.jipipe.api.history.AddCompartmentGraphHistorySnapshot

undo() - Method in class org.hkijena.jipipe.api.history.AddNodeGraphHistorySnapshot

undo() - Method in class org.hkijena.jipipe.api.history.CompoundGraphHistorySnapshot

undo() - Method in class org.hkijena.jipipe.api.history.DeleteCompartmentGraphHistorySnapshot

undo() - Method in class org.hkijena.jipipe.api.history.EdgeConnectGraphHistorySnapshot

undo() - Method in class org.hkijena.jipipe.api.history.EdgeDisconnectAllTargetsGraphHistorySnapshot

undo() - Method in class org.hkijena.jipipe.api.history.EdgeDisconnectGraphHistorySnapshot

undo() - Method in class org.hkijena.jipipe.api.history.GraphChangedHistorySnapshot

undo() - Method in class org.hkijena.jipipe.api.history.ImportCompartmentGraphHistorySnapshot

undo() - Method in interface org.hkijena.jipipe.api.history.JIPipeAlgorithmGraphHistorySnapshot

Reverts the operation

undo() - Method in class org.hkijena.jipipe.api.history.JIPipeGraphHistory

Reverts the last operation

undo() - Method in class org.hkijena.jipipe.api.history.MoveNodesGraphHistorySnapshot

undo() - Method in class org.hkijena.jipipe.api.history.RemoveNodeGraphHistorySnapshot

undo() - Method in class org.hkijena.jipipe.api.history.SlotConfigurationHistorySnapshot

unpackToNodeGroup(JsonAlgorithm) - Static method in class org.hkijena.jipipe.api.grouping.JsonAlgorithm

Replaces the targeted JsonAlgorithm by a NodeGroup

UnreferencedRoiToMaskAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

Wrapper around RoiManager

UnreferencedRoiToMaskAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToMaskAlgorithm

Instantiates a new node type.

UnreferencedRoiToMaskAlgorithm(UnreferencedRoiToMaskAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToMaskAlgorithm

Instantiates a new node type.

UnreferencedRoiToRGBAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

Wrapper around RoiManager

UnreferencedRoiToRGBAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToRGBAlgorithm

Instantiates a new node type.

UnreferencedRoiToRGBAlgorithm(UnreferencedRoiToRGBAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToRGBAlgorithm

Instantiates a new node type.

UnsatisfiedDependenciesDialog - Class in org.hkijena.jipipe.ui.project

Shown when unsatisfied dependencies are found

UnsatisfiedDependenciesDialog(JIPipeWorkbench, Path, Set<JIPipeDependency>, Set<JIPipeImageJUpdateSiteDependency>) - Constructor for class org.hkijena.jipipe.ui.project.UnsatisfiedDependenciesDialog

UnsetRoiImageAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

Wrapper around RoiManager

UnsetRoiImageAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnsetRoiImageAlgorithm

Instantiates a new node type.

UnsetRoiImageAlgorithm(UnsetRoiImageAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnsetRoiImageAlgorithm

Instantiates a new node type.

update(Graphics, JComponent) - Method in class org.hkijena.jipipe.utils.CustomTabbedPaneUI

updateActivationStatus() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeHorizontalNodeUI

updateActivationStatus() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI

Called when the algorithm was enabled/disabled

updateActivationStatus() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeVerticalNodeUI

updateAlgorithmSlotUIs() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeHorizontalNodeUI

updateAlgorithmSlotUIs() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI

Updates the slots

updateAlgorithmSlotUIs() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeVerticalNodeUI

updateAnalyzer() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.ImageStatisticsSetParameter

Sends the settings to Analyzer

UpdateCacheNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu

UpdateCacheNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.UpdateCacheNodeUIContextAction

updateConflictList() - Method in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog

updateConflictList() - Method in class org.hkijena.jipipe.ui.ijupdater.ResolveDependencies

updateConflictsMessage() - Method in class org.hkijena.jipipe.ui.ijupdater.JIPipeImageJPluginManager

updateFont() - Method in class org.hkijena.jipipe.ui.components.ZoomLabel

updateGraphNodeSlots() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Synchronizes the slots with the slot definition

updateGroupSlots() - Method in class org.hkijena.jipipe.api.grouping.GraphWrapperAlgorithm

Updates the slots from the wrapped graph

updateMappings() - Method in class org.hkijena.jipipe.ui.ijupdater.FileTableModel

updateName() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeHorizontalNodeUI

updateName() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI

Called when the algorithm name was updated

updateName() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeVerticalNodeUI

updateNavigation() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

Updates the navigation list

updateRegistrationTasks() - Method in class org.hkijena.jipipe.extensions.jsonextensionloader.JsonExtensionLoaderExtension

Tries to register more extensions waiting for dependencies

updateSelection() - Method in class org.hkijena.jipipe.ui.compartments.JIPipeCompartmentGraphUI

updateSelection() - Method in class org.hkijena.jipipe.ui.extensionbuilder.JIPipeJsonExporter

updateSelection() - Method in class org.hkijena.jipipe.ui.extensionbuilder.JIPipeJsonExtensionGraphUI

updateSelection() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCompartmentUI

updateSelection() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

updateSeriesList() - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotSeriesBuilder

Updates the column parameters

UpdateSiteListUI - Class in org.hkijena.jipipe.ui.ijupdater

UpdateSiteListUI(JIPipeImageJPluginManager) - Constructor for class org.hkijena.jipipe.ui.ijupdater.UpdateSiteListUI

UpdateSiteListUI.Ranking - Class in org.hkijena.jipipe.ui.ijupdater

UpdateSiteUI - Class in org.hkijena.jipipe.ui.ijupdater

UpdateSiteUI(UpdateSiteListUI, UpdateSite) - Constructor for class org.hkijena.jipipe.ui.ijupdater.UpdateSiteUI

updateSize() - Method in class org.hkijena.jipipe.ui.components.ZoomFlatIconButton

updateSize() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeHorizontalNodeUI

updateSize() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI

Recalculates the UI size

updateSize() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeVerticalNodeUI

updateSlotInheritance() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Updates the inheritance: Passes traits from input slots to output slots while modifying the results depending on the trait configuration.

updateSlots() - Method in class org.hkijena.jipipe.extensions.parameters.collections.InputSlotMapParameterCollection

updateSlots() - Method in class org.hkijena.jipipe.extensions.parameters.collections.OutputSlotMapParameterCollection

updateSlots() - Method in class org.hkijena.jipipe.extensions.parameters.collections.SlotMapParameterCollection

Method that adds missing entries, or removes invalid entries based on the algorithm's slot configuration

updateStatus() - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheManagerUI

Updates the UI status

updateStatus() - Method in class org.hkijena.jipipe.ui.running.JIPipeRunnerQueueUI

Updates the UI status

userCanCreate() - Method in class org.hkijena.jipipe.api.compartments.algorithms.CompartmentNodeTypeCategory

userCanCreate() - Method in class org.hkijena.jipipe.api.nodes.categories.AnnotationsNodeTypeCategory

userCanCreate() - Method in class org.hkijena.jipipe.api.nodes.categories.DataSourceNodeTypeCategory

userCanCreate() - Method in class org.hkijena.jipipe.api.nodes.categories.FileSystemNodeTypeCategory

userCanCreate() - Method in class org.hkijena.jipipe.api.nodes.categories.InternalNodeTypeCategory

userCanCreate() - Method in class org.hkijena.jipipe.api.nodes.categories.MiscellaneousNodeTypeCategory

userCanCreate() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeTypeCategory

Returns if nodes of this category can be created by users

userCanDelete() - Method in class org.hkijena.jipipe.api.compartments.algorithms.CompartmentNodeTypeCategory

userCanDelete() - Method in class org.hkijena.jipipe.api.nodes.categories.AnnotationsNodeTypeCategory

userCanDelete() - Method in class org.hkijena.jipipe.api.nodes.categories.DataSourceNodeTypeCategory

userCanDelete() - Method in class org.hkijena.jipipe.api.nodes.categories.FileSystemNodeTypeCategory

userCanDelete() - Method in class org.hkijena.jipipe.api.nodes.categories.InternalNodeTypeCategory

userCanDelete() - Method in class org.hkijena.jipipe.api.nodes.categories.MiscellaneousNodeTypeCategory

userCanDelete() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeTypeCategory

Returns if nodes of this category can be deleted by users

UserFriendlyErrorUI - Class in org.hkijena.jipipe.ui.components

Displays exceptions in a user-friendly way.

UserFriendlyErrorUI(MarkdownDocument, int) - Constructor for class org.hkijena.jipipe.ui.components.UserFriendlyErrorUI

UserFriendlyErrorUI.Entry - Class in org.hkijena.jipipe.ui.components

Entry to be displayed

UserFriendlyErrorUI.EntryUI - Class in org.hkijena.jipipe.ui.components

UI for UserFriendlyErrorUI.Entry

UserFriendlyException - Interface in org.hkijena.jipipe.api.exceptions

Error/Exception that contains user-friendly information

UserFriendlyNullPointerException - Exception in org.hkijena.jipipe.api.exceptions

A RuntimeException that contains more detailed information for users.

UserFriendlyNullPointerException(String, String, String, String, String) - Constructor for exception org.hkijena.jipipe.api.exceptions.UserFriendlyNullPointerException

UserFriendlyRuntimeException - Exception in org.hkijena.jipipe.api.exceptions

A RuntimeException that contains more detailed information for users.

UserFriendlyRuntimeException(String, Throwable, String, String, String, String) - Constructor for exception org.hkijena.jipipe.api.exceptions.UserFriendlyRuntimeException

UserFriendlyRuntimeException(String, String, String, String, String) - Constructor for exception org.hkijena.jipipe.api.exceptions.UserFriendlyRuntimeException

UserFriendlyRuntimeException(Throwable, String, String, String, String) - Constructor for exception org.hkijena.jipipe.api.exceptions.UserFriendlyRuntimeException

UserParameterDefinition(JIPipeDynamicParameterCollection, String, Class<?>) - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection.UserParameterDefinition

UtilitiesExtension - Class in org.hkijena.jipipe.extensions.utils

UtilitiesExtension() - Constructor for class org.hkijena.jipipe.extensions.utils.UtilitiesExtension

V

validatePlugins(boolean) - Method in class org.hkijena.jipipe.ui.JIPipeProjectWorkbench

Validates the plugins

validateProject(boolean) - Method in class org.hkijena.jipipe.ui.JIPipeProjectWorkbench

Validates the project

value() - Method in class org.hkijena.jipipe.api.nodes.DefaultJIPipeInputSlot

value() - Method in class org.hkijena.jipipe.api.nodes.DefaultJIPipeOutputSlot

valueOf(String) - Static method in enum org.hkijena.jipipe.api.data.JIPipeAnnotationMergeStrategy

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.api.data.JIPipeSlotType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.api.JIPipeValidityReport.Response

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.api.nodes.JIPipeColumnGrouping

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.api.parameters.JIPipeParameterPersistence

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.api.parameters.JIPipeParameterVisibility

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.ijmultitemplatematching.TemplateMatchingMethod

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background.RollingBallBackgroundEstimator2DAlgorithm.BackgroundType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background.RollingBallBackgroundEstimator2DAlgorithm.Method

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.MergeChannelsAlgorithm.ChannelColor

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.ZProjectorAlgorithm.Method

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.EigenvalueSelection2D

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.FrangiVesselnessFeatures.SlicingMode

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.LocalMaxima2DAlgorithm.OutputType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.HyperstackDimension

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.InterpolationMethod

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyMath2DAlgorithm.Transformation

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyTransform2DAlgorithm.Transformation

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ImageCalculator2DAlgorithm.Operand

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ImageCalculator2DAlgorithm.Operation

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyBinary2DAlgorithm.Operation

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.RemoveOutliersFilter2DAlgorithm.Mode

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm.Anchor

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm.Mode

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics.HistogramGenerator.MultiChannelMode

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformFlip2DAlgorithm.FlipMode

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformRotate2DAlgorithm.RotationMode

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMEColorMode

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMETIFFCompression

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejdatatypes.util.CalibrationMode

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.Measurement

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.MeasurementColumn

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejdatatypes.util.RoiOutline

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.parameters.colors.ColorMap

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.parameters.patterns.StringPatternExtraction.Mode

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.parameters.predicates.DoublePredicate.Mode

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.parameters.predicates.PathPredicate.Mode

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.parameters.predicates.StringOrDoublePredicate.FilterMode

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.parameters.predicates.StringPredicate.Mode

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.parameters.primitives.StringOrDouble.Mode

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.parameters.roi.Anchor

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.parameters.util.LogicalOperation

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.parameters.util.SortOrder

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.plots.datatypes.HistogramPlotData.HistogramType_

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.tables.ColumnContentType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.tables.parameters.TableColumnSourceParameter.Mode

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.ui.components.DocumentTabPane.CloseMode

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.ui.components.JIPipeDataTypePicker.Mode

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.ui.components.JIPipeNodeInfoPicker.Mode

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.ui.components.MessagePanel.MessageType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.ui.components.PathEditor.IOMode

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.ui.components.PathEditor.PathMode

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.ui.extension.MenuTarget

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.ui.grapheditor.JIPipeGraphViewMode

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.ui.grapheditor.layout.GraphAutoLayout

Returns the enum constant of this type with the specified name.

values() - Static method in enum org.hkijena.jipipe.api.data.JIPipeAnnotationMergeStrategy

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.api.data.JIPipeSlotType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.api.JIPipeValidityReport.Response

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.api.nodes.JIPipeColumnGrouping

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.api.parameters.JIPipeParameterPersistence

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.api.parameters.JIPipeParameterVisibility

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.ijmultitemplatematching.TemplateMatchingMethod

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background.RollingBallBackgroundEstimator2DAlgorithm.BackgroundType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background.RollingBallBackgroundEstimator2DAlgorithm.Method

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.MergeChannelsAlgorithm.ChannelColor

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.ZProjectorAlgorithm.Method

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.EigenvalueSelection2D

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.FrangiVesselnessFeatures.SlicingMode

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.LocalMaxima2DAlgorithm.OutputType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.HyperstackDimension

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.InterpolationMethod

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyMath2DAlgorithm.Transformation

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyTransform2DAlgorithm.Transformation

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ImageCalculator2DAlgorithm.Operand

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ImageCalculator2DAlgorithm.Operation

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyBinary2DAlgorithm.Operation

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.RemoveOutliersFilter2DAlgorithm.Mode

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm.Anchor

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm.Mode

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics.HistogramGenerator.MultiChannelMode

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformFlip2DAlgorithm.FlipMode

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformRotate2DAlgorithm.RotationMode

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMEColorMode

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMETIFFCompression

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.imagejdatatypes.util.CalibrationMode

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.Measurement

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.MeasurementColumn

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.imagejdatatypes.util.RoiOutline

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.parameters.colors.ColorMap

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.parameters.patterns.StringPatternExtraction.Mode

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.parameters.predicates.DoublePredicate.Mode

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.parameters.predicates.PathPredicate.Mode

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.parameters.predicates.StringOrDoublePredicate.FilterMode

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.parameters.predicates.StringPredicate.Mode

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.parameters.primitives.StringOrDouble.Mode

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.parameters.roi.Anchor

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.parameters.util.LogicalOperation

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.parameters.util.SortOrder

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.plots.datatypes.HistogramPlotData.HistogramType_

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.tables.ColumnContentType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.tables.parameters.TableColumnSourceParameter.Mode

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.ui.components.DocumentTabPane.CloseMode

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.ui.components.JIPipeDataTypePicker.Mode

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.ui.components.JIPipeNodeInfoPicker.Mode

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.ui.components.MessagePanel.MessageType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.ui.components.PathEditor.IOMode

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.ui.components.PathEditor.PathMode

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.ui.extension.MenuTarget

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.ui.grapheditor.JIPipeGraphViewMode

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.ui.grapheditor.layout.GraphAutoLayout

Returns an array containing the constants of this enum type, in the order they are declared.

vertexAdded(GraphVertexChangeEvent<V>) - Method in class org.hkijena.jipipe.utils.WeakPredecessorInspector

vertexRemoved(GraphVertexChangeEvent<V>) - Method in class org.hkijena.jipipe.utils.WeakPredecessorInspector

Voronoi2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary

Wrapper around EDM

Voronoi2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary.Voronoi2DAlgorithm

Instantiates a new node type.

Voronoi2DAlgorithm(Voronoi2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary.Voronoi2DAlgorithm

Instantiates a new node type.

W

walkInternalResourceFolder(String) - Static method in class org.hkijena.jipipe.utils.ResourceUtils

Iterates through all internal resources and

wasCanceled - Variable in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog

WeakPredecessorInspector<V,E> - Class in org.hkijena.jipipe.utils

Calculates the predecessor set of a vertex

WeakPredecessorInspector(Graph<V, E>) - Constructor for class org.hkijena.jipipe.utils.WeakPredecessorInspector

WebUtils - Class in org.hkijena.jipipe.utils

WebUtils() - Constructor for class org.hkijena.jipipe.utils.WebUtils

WindowClosedEvent - Class in org.hkijena.jipipe.ui.events

Triggered when a JIPipe window was closed

WindowClosedEvent(Window) - Constructor for class org.hkijena.jipipe.ui.events.WindowClosedEvent

WindowOpenedEvent - Class in org.hkijena.jipipe.ui.events

Triggered when a window was opened

WindowOpenedEvent(Window) - Constructor for class org.hkijena.jipipe.ui.events.WindowOpenedEvent

WINDOWS_EVENTS - Static variable in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWindow

WINDOWS_EVENTS - Static variable in class org.hkijena.jipipe.ui.JIPipeProjectWindow

WindowWatcher() - Constructor for class org.hkijena.jipipe.JIPipeLauncher.WindowWatcher

WITH_DOCUMENTATION - Static variable in class org.hkijena.jipipe.ui.components.FormPanel

Flag that indicates that a documentation panel is shown.

WITH_SCROLLING - Static variable in class org.hkijena.jipipe.ui.components.FormPanel

Flag that makes the content be wrapped in a JScrollPane

WITH_SEARCH_BAR - Static variable in class org.hkijena.jipipe.ui.parameters.ParameterPanel

With this flag, there will be a search bar for parameters.

WITHOUT_LABEL_SEPARATION - Static variable in class org.hkijena.jipipe.ui.parameters.ParameterPanel

With this flag, parameters that do not show a label are not put below anymore

withoutInput() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder

Disables input

withoutOutput() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder

Disables output

wordWrappedHTML(String, int) - Static method in class org.hkijena.jipipe.utils.StringUtils

Create word wrapping in HTML.

wordWrappedHTMLElement(String, int) - Static method in class org.hkijena.jipipe.utils.StringUtils

Create word wrapping in HTML.

WorkDirectoryChangedEvent - Class in org.hkijena.jipipe.api.events

Triggered when the work directory of a project or algorithm was changed

WorkDirectoryChangedEvent(Path) - Constructor for class org.hkijena.jipipe.api.events.WorkDirectoryChangedEvent

WrapperColumnHeaderRenderer(JIPipeDataSlot) - Constructor for class org.hkijena.jipipe.ui.batchassistant.DataSlotTableUI.WrapperColumnHeaderRenderer

Creates a new instance

WrapperColumnHeaderRenderer(JIPipeDataSlot) - Constructor for class org.hkijena.jipipe.ui.cache.JIPipeCacheDataSlotTableUI.WrapperColumnHeaderRenderer

Creates a new instance

WrapperTableModel(JIPipeDataSlot) - Constructor for class org.hkijena.jipipe.ui.batchassistant.DataSlotTableUI.WrapperTableModel

Creates a new instance

WrapperTableModel(JTable, JIPipeDataSlot) - Constructor for class org.hkijena.jipipe.ui.cache.JIPipeCacheDataSlotTableUI.WrapperTableModel

Creates a new instance

writeImage(BufferedImage, String) - Static method in class org.hkijena.jipipe.utils.ScreenImage

Write a BufferedImage to a File.

X

XMLData - Class in org.hkijena.jipipe.extensions.strings

XMLData(String) - Constructor for class org.hkijena.jipipe.extensions.strings.XMLData

XMLData(StringData) - Constructor for class org.hkijena.jipipe.extensions.strings.XMLData

XMLDataSlotRowUI - Class in org.hkijena.jipipe.extensions.strings

XMLDataSlotRowUI(JIPipeProjectWorkbench, JIPipeDataSlot, JIPipeExportedDataTable.Row) - Constructor for class org.hkijena.jipipe.extensions.strings.XMLDataSlotRowUI

Creates a new UI

XYPlotData - Class in org.hkijena.jipipe.extensions.plots.datatypes

Contains data for XY plots Any plot has following columns: X (Double), Y (Double)

XYPlotData() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.XYPlotData

Creates a new instance

XYPlotData(XYPlotData) - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.XYPlotData

Creates a copy

Z

ZeroTableColumn - Class in org.hkijena.jipipe.extensions.tables.datatypes

Generates numbers from 0 to row count

ZeroTableColumn() - Constructor for class org.hkijena.jipipe.extensions.tables.datatypes.ZeroTableColumn

zoom(double) - Method in class org.hkijena.jipipe.utils.PointRange

Apply scaling to all components and return the result.

ZoomChangedEvent - Class in org.hkijena.jipipe.ui.events

Triggered by ZoomViewPort when the zoom was changed

ZoomChangedEvent(ZoomViewPort) - Constructor for class org.hkijena.jipipe.ui.events.ZoomChangedEvent

ZoomFlatIconButton - Class in org.hkijena.jipipe.ui.components

Flat JButton that zooms and displays a zoomable icon

ZoomFlatIconButton(ImageIcon, ZoomViewPort) - Constructor for class org.hkijena.jipipe.ui.components.ZoomFlatIconButton

ZoomIcon - Class in org.hkijena.jipipe.ui.components

Icon that adapts to the zoom level of a ZoomViewPort

ZoomIcon(ImageIcon, ZoomViewPort) - Constructor for class org.hkijena.jipipe.ui.components.ZoomIcon

zoomIn() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

ZoomLabel - Class in org.hkijena.jipipe.ui.components

JLabel that changes its font based on the ZoomViewPort zoom level

ZoomLabel(String, Icon, ZoomViewPort) - Constructor for class org.hkijena.jipipe.ui.components.ZoomLabel

zoomOut() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

ZoomViewPort - Interface in org.hkijena.jipipe.ui.components

ZProjectorAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions

Wrapper around ZProjector

ZProjectorAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.ZProjectorAlgorithm

Instantiates a new node type.

ZProjectorAlgorithm(ZProjectorAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.ZProjectorAlgorithm

Instantiates a new node type.

ZProjectorAlgorithm.Method - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions

Available transformation functions

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